ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related ... 394 e-107
2emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase 373 e-100
3emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor ... 103 2e-19
4gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, par... 48 0.011
5gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, co... 44 0.17
6ref|NM_183542.2| Oryza sativa (japonica cultivar-group), mRNA 40 2.6
7ref|XM_478764.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.6
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 2.6
9gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 2.6
10gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome... 40 2.6
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
14dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
15dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
16dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
17dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.6
18dbj|AK103623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.6
19gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complet... 40 2.6

>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase
          Length = 1245

 Score =  394 bits (199), Expect = e-107
 Identities = 199/199 (100%)
 Strand = Plus / Minus

                                                                        
Query: 11   tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 70
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 1186

                                                                        
Query: 71   gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 1126

                                                                        
Query: 131  atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 1066

                               
Query: 191  ggacacgcctgttggggac 209
            |||||||||||||||||||
Sbjct: 1065 ggacacgcctgttggggac 1047



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>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase
          Length = 740

 Score =  373 bits (188), Expect = e-100
 Identities = 202/204 (99%), Gaps = 2/204 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   tgttttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaac 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tgttttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaac 593

                                                                       
Query: 66  acatagactacttaacggccactcacacagtcacacagtactactacgttacaccgattg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 acatagactacttaacggccactcacacagtcacacagtactactacgttacaccgattg 533

                                                                       
Query: 126 gttatatatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgat 185
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 532 gttatatatctctcacatgtcagcggcgatcccctcgt-gccggcgacggcggtctcgat 474

                                   
Query: 186 gtcctggacacgcctgttggggac 209
           ||||| ||||||||||||||||||
Sbjct: 473 gtcct-gacacgcctgttggggac 451



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>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar
            Cheyenne
          Length = 1226

 Score =  103 bits (52), Expect = 2e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                        
Query: 136  tctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcctggaca 195
            ||||||||||| |||||||||||||||||||||| |  |||||||||||| |||||||||
Sbjct: 1107 tctcacatgtcggcggcgatcccctcgtcgccggtggtggcggtctcgatatcctggaca 1048

                        
Query: 196  cgcctgttgggg 207
            ||||||||||||
Sbjct: 1047 cgcctgttgggg 1036



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>gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, partial cds
          Length = 760

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 174 ggcggtctcgatgtcctggacacgcctgttggggac 209
           ||||||||||||| ||| |||||| |||||||||||
Sbjct: 587 ggcggtctcgatgcccttgacacggctgttggggac 552



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>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence
          Length = 253910

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 85    cactcacacagtcacacagtactact 110
             |||||| |||||||||||||||||||
Sbjct: 35412 cactcatacagtcacacagtactact 35437



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>ref|NM_183542.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 653

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 tcgtcgccggcgacggcggt 179
           ||||||||||||||||||||
Sbjct: 440 tcgtcgccggcgacggcggt 459



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>ref|XM_478764.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1472

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 152 cgatcccctcgtcgccggcg 171
           ||||||||||||||||||||
Sbjct: 48  cgatcccctcgtcgccggcg 67



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 155      tcccctcgtcgccggcgacggcgg 178
                ||||||||||||||||| ||||||
Sbjct: 14162748 tcccctcgtcgccggcgccggcgg 14162771



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>gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0012F18, from chromosome 3, complete sequence
          Length = 122903

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 155   tcccctcgtcgccggcgacggcgg 178
             ||||||||||||||||| ||||||
Sbjct: 37039 tcccctcgtcgccggcgccggcgg 37062



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>gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome 8, complete sequence
          Length = 199032

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 126    gttatatatctctcacatgtcagc 149
              ||||||||||| ||||||||||||
Sbjct: 173426 gttatatatctatcacatgtcagc 173449



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 152      cgatcccctcgtcgccggcg 171
                ||||||||||||||||||||
Sbjct: 22867465 cgatcccctcgtcgccggcg 22867484



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 155      tcccctcgtcgccggcgacggcgg 178
                ||||||||||||||||| ||||||
Sbjct: 14157723 tcccctcgtcgccggcgccggcgg 14157746



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    tcgtcgccggcgacggcggt 179
              ||||||||||||||||||||
Sbjct: 631577 tcgtcgccggcgacggcggt 631596



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>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032H19
          Length = 126434

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   tcgtcgccggcgacggcggt 179
             ||||||||||||||||||||
Sbjct: 15321 tcgtcgccggcgacggcggt 15340



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>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439B06
          Length = 135991

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    tcgtcgccggcgacggcggt 179
              ||||||||||||||||||||
Sbjct: 106182 tcgtcgccggcgacggcggt 106201



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>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1019_E02
          Length = 121607

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   cgatcccctcgtcgccggcg 171
             ||||||||||||||||||||
Sbjct: 60732 cgatcccctcgtcgccggcg 60751



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>dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D10, full
           insert sequence
          Length = 1471

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 152 cgatcccctcgtcgccggcg 171
           ||||||||||||||||||||
Sbjct: 47  cgatcccctcgtcgccggcg 66



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>dbj|AK103623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133N12, full
           insert sequence
          Length = 654

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 tcgtcgccggcgacggcggt 179
           ||||||||||||||||||||
Sbjct: 440 tcgtcgccggcgacggcggt 459



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>gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complete sequence
          Length = 185158

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 126   gttatatatctctcacatgtcagc 149
             ||||||||||| ||||||||||||
Sbjct: 41286 gttatatatctatcacatgtcagc 41309


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,384,375
Number of Sequences: 3902068
Number of extensions: 2384375
Number of successful extensions: 146413
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145866
Number of HSP's gapped (non-prelim): 545
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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