Clone Name | rbaet99f07 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase Length = 1245 Score = 394 bits (199), Expect = e-107 Identities = 199/199 (100%) Strand = Plus / Minus Query: 11 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1245 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 1186 Query: 71 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1185 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 1126 Query: 131 atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1125 atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 1066 Query: 191 ggacacgcctgttggggac 209 ||||||||||||||||||| Sbjct: 1065 ggacacgcctgttggggac 1047
>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase Length = 740 Score = 373 bits (188), Expect = e-100 Identities = 202/204 (99%), Gaps = 2/204 (0%) Strand = Plus / Minus Query: 6 tgttttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaac 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 652 tgttttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaac 593 Query: 66 acatagactacttaacggccactcacacagtcacacagtactactacgttacaccgattg 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 592 acatagactacttaacggccactcacacagtcacacagtactactacgttacaccgattg 533 Query: 126 gttatatatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgat 185 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 532 gttatatatctctcacatgtcagcggcgatcccctcgt-gccggcgacggcggtctcgat 474 Query: 186 gtcctggacacgcctgttggggac 209 ||||| |||||||||||||||||| Sbjct: 473 gtcct-gacacgcctgttggggac 451
>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar Cheyenne Length = 1226 Score = 103 bits (52), Expect = 2e-19 Identities = 67/72 (93%) Strand = Plus / Minus Query: 136 tctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcctggaca 195 ||||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||| Sbjct: 1107 tctcacatgtcggcggcgatcccctcgtcgccggtggtggcggtctcgatatcctggaca 1048 Query: 196 cgcctgttgggg 207 |||||||||||| Sbjct: 1047 cgcctgttgggg 1036
>gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, partial cds Length = 760 Score = 48.1 bits (24), Expect = 0.011 Identities = 33/36 (91%) Strand = Plus / Minus Query: 174 ggcggtctcgatgtcctggacacgcctgttggggac 209 ||||||||||||| ||| |||||| ||||||||||| Sbjct: 587 ggcggtctcgatgcccttgacacggctgttggggac 552
>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence Length = 253910 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 85 cactcacacagtcacacagtactact 110 |||||| ||||||||||||||||||| Sbjct: 35412 cactcatacagtcacacagtactact 35437
>ref|NM_183542.2| Oryza sativa (japonica cultivar-group), mRNA Length = 653 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 tcgtcgccggcgacggcggt 179 |||||||||||||||||||| Sbjct: 440 tcgtcgccggcgacggcggt 459
>ref|XM_478764.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1472 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cgatcccctcgtcgccggcg 171 |||||||||||||||||||| Sbjct: 48 cgatcccctcgtcgccggcg 67
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 tcccctcgtcgccggcgacggcgg 178 ||||||||||||||||| |||||| Sbjct: 14162748 tcccctcgtcgccggcgccggcgg 14162771
>gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence Length = 122903 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 tcccctcgtcgccggcgacggcgg 178 ||||||||||||||||| |||||| Sbjct: 37039 tcccctcgtcgccggcgccggcgg 37062
>gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome 8, complete sequence Length = 199032 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 gttatatatctctcacatgtcagc 149 ||||||||||| |||||||||||| Sbjct: 173426 gttatatatctatcacatgtcagc 173449
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cgatcccctcgtcgccggcg 171 |||||||||||||||||||| Sbjct: 22867465 cgatcccctcgtcgccggcg 22867484
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 tcccctcgtcgccggcgacggcgg 178 ||||||||||||||||| |||||| Sbjct: 14157723 tcccctcgtcgccggcgccggcgg 14157746
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 tcgtcgccggcgacggcggt 179 |||||||||||||||||||| Sbjct: 631577 tcgtcgccggcgacggcggt 631596
>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032H19 Length = 126434 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 tcgtcgccggcgacggcggt 179 |||||||||||||||||||| Sbjct: 15321 tcgtcgccggcgacggcggt 15340
>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439B06 Length = 135991 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 tcgtcgccggcgacggcggt 179 |||||||||||||||||||| Sbjct: 106182 tcgtcgccggcgacggcggt 106201
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cgatcccctcgtcgccggcg 171 |||||||||||||||||||| Sbjct: 60732 cgatcccctcgtcgccggcg 60751
>dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D10, full insert sequence Length = 1471 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cgatcccctcgtcgccggcg 171 |||||||||||||||||||| Sbjct: 47 cgatcccctcgtcgccggcg 66
>dbj|AK103623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133N12, full insert sequence Length = 654 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 tcgtcgccggcgacggcggt 179 |||||||||||||||||||| Sbjct: 440 tcgtcgccggcgacggcggt 459
>gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complete sequence Length = 185158 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 gttatatatctctcacatgtcagc 149 ||||||||||| |||||||||||| Sbjct: 41286 gttatatatctatcacatgtcagc 41309 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,384,375 Number of Sequences: 3902068 Number of extensions: 2384375 Number of successful extensions: 146413 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145866 Number of HSP's gapped (non-prelim): 545 length of query: 209 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 187 effective length of database: 17,147,199,772 effective search space: 3206526357364 effective search space used: 3206526357364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)