ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY596570.1| Saccharum officinarum clone SCEPLR1051E09, comple... 68 2e-08
2gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome... 56 8e-05
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
4dbj|AK099186.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
5dbj|AK061232.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
6dbj|AK058243.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 56 8e-05
8gb|AY107988.1| Zea mays PCO086949 mRNA sequence 52 0.001
9emb|AL713860.12| Mouse DNA sequence from clone RP23-446K18 on ch... 46 0.080
10emb|AL731866.8| Mouse DNA sequence from clone RP23-37F22 on chro... 46 0.080
11emb|AL663031.15| Mouse DNA sequence from clone RP23-29H5 on chro... 44 0.32
12emb|BX649544.12| Zebrafish DNA sequence from clone CH211-123F23 ... 44 0.32
13gb|AC154749.2| Mus musculus BAC clone RP24-399C21 from 17, compl... 44 0.32
14emb|AL606705.23| Zebrafish DNA sequence from clone BUSM1-175P5 i... 44 0.32
15gb|AY103871.1| Zea mays PCO072881 mRNA sequence 44 0.32
16gb|AC103810.5| Homo sapiens chromosome 17, clone RP11-927P21, co... 42 1.3
17gb|AC165265.2| Mus musculus BAC clone RP23-15M14 from chromosome... 42 1.3
18gb|AC109587.2| Homo sapiens chromosome 3 clone CTD-2013N24, comp... 42 1.3
19gb|AC104166.2| Homo sapiens chromosome 3 clone RP11-199N21, comp... 42 1.3
20emb|BX276188.11| Zebrafish DNA sequence from clone CH211-245A19,... 42 1.3
21gb|AC159207.2| Mus musculus BAC clone RP23-150H14 from chromosom... 42 1.3
22gb|AC021631.6|AC021631 Mus musculus, clone RP23-38J11, complete ... 42 1.3
23emb|BX510640.4| Zebrafish DNA sequence from clone RP71-57J15 in ... 42 1.3
24emb|AL136520.3|CNS01DW9 Human chromosome 14 DNA sequence BAC C-2... 42 1.3
25gb|AC003663.1|AC003663 Homo sapiens chromosome 17, clone HCIT87G... 42 1.3
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.9
27emb|CR626888.9| Zebrafish DNA sequence from clone CH211-250B7 in... 40 4.9
28gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genom... 40 4.9
29emb|AL954816.21| Zebrafish DNA sequence from clone DKEY-38P6 in ... 40 4.9
30gb|AC123921.3| Mus musculus BAC clone RP24-180J14 from chromosom... 40 4.9
31emb|BX927349.12| Zebrafish DNA sequence from clone DKEY-84K15 in... 40 4.9
32emb|BX537265.19| Zebrafish DNA sequence from clone DKEY-79H4 in ... 40 4.9
33gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete s... 40 4.9
34gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete se... 40 4.9
35emb|BX293991.12| Zebrafish DNA sequence from clone CH211-261I24 ... 40 4.9
36emb|AL359813.23| Human DNA sequence from clone RP5-895C5 on chro... 40 4.9
37emb|BX005361.16| Zebrafish DNA sequence from clone DKEY-19C8 in ... 40 4.9
38emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4,... 40 4.9
39emb|CR354594.13| Zebrafish DNA sequence from clone DKEY-173F1 in... 40 4.9
40emb|BX511081.8| Zebrafish DNA sequence from clone DKEY-6B12 in l... 40 4.9
41emb|CR293511.11| Zebrafish DNA sequence from clone DKEY-93H22 in... 40 4.9
42gb|AC078867.11| Homo sapiens 3 BAC RP11-605F14 (Roswell Park Can... 40 4.9
43emb|BX897670.7| Zebrafish DNA sequence from clone DKEY-117L15 in... 40 4.9
44emb|AL954819.21| Zebrafish DNA sequence from clone CH211-1F7 in ... 40 4.9
45emb|BX649598.17| Zebrafish DNA sequence from clone CH211-214P12 ... 40 4.9
46dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
47dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
48dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
49dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
50emb|AL929105.27| Zebrafish DNA sequence from clone CH211-142D6 i... 40 4.9
51emb|AL954670.11| Zebrafish DNA sequence from clone CH211-274J15 ... 40 4.9
52emb|BX465202.4| Zebrafish DNA sequence from clone CH211-191G24 i... 40 4.9
53emb|BX005342.14| Zebrafish DNA sequence from clone DKEY-81P7, co... 40 4.9
54dbj|AP006057.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
55dbj|AP005655.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
56dbj|AP004847.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
57emb|BX005239.8| Zebrafish DNA sequence from clone CH211-144F7 in... 40 4.9
58emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in... 40 4.9
59emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 4.9
60gb|AC144813.3| Mus musculus BAC clone RP24-324I23 from 9, comple... 40 4.9
61emb|BX927123.8| Zebrafish DNA sequence from clone CH211-278N15 i... 40 4.9
62emb|BX465206.15| Zebrafish DNA sequence from clone DKEYP-25A3 in... 40 4.9
63emb|BX088706.8| Zebrafish DNA sequence from clone CH211-196C2 in... 40 4.9
64emb|BX324163.8| Zebrafish DNA sequence from clone DKEY-106C17 in... 40 4.9
65emb|BX936463.13| Zebrafish DNA sequence from clone DKEY-4G17 in ... 40 4.9
66emb|CR854851.12| Zebrafish DNA sequence from clone DKEY-98D7 in ... 40 4.9
67emb|AL833804.16| Mouse DNA sequence from clone RP23-20A6 on chro... 40 4.9
68emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chro... 40 4.9
69emb|CR354395.20| Zebrafish DNA sequence from clone DKEYP-45G11 i... 40 4.9
70emb|CR936437.14| Zebrafish DNA sequence from clone CH211-197I23 ... 40 4.9 
>gb|AY596570.1| Saccharum officinarum clone SCEPLR1051E09, complete sequence
          Length = 762

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                 
Query: 315 ggcgccggcttggcaacgacgaaggggaagtcgaggacgacgaccttgtcgagc 368
           |||| ||||||||| ||||||| ||||||||||| |||||| ||||||||||||
Sbjct: 341 ggcggcggcttggcgacgacgacggggaagtcgatgacgaccaccttgtcgagc 394
to top
>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19
              map R1938, complete sequence
          Length = 160847

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 331    cgacgaaggggaagtcgaggacgacgaccttgtcga 366
              |||||| ||||||||||| |||||||||||||||||
Sbjct: 102710 cgacgacggggaagtcgacgacgacgaccttgtcga 102745



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 50     tttgaacggaatgcacggaatagag 74
              |||||||||||||||||| ||||||
Sbjct: 102441 tttgaacggaatgcacgggatagag 102465
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                   
Query: 331     cgacgaaggggaagtcgaggacgacgaccttgtcga 366
               |||||| ||||||||||| |||||||||||||||||
Sbjct: 2326711 cgacgacggggaagtcgacgacgacgaccttgtcga 2326746



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 50      tttgaacggaatgcacggaatagag 74
               |||||||||||||||||| ||||||
Sbjct: 2326442 tttgaacggaatgcacgggatagag 2326466
to top
>dbj|AK099186.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101N09, full
           insert sequence
          Length = 700

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 331 cgacgaaggggaagtcgaggacgacgaccttgtcga 366
           |||||| ||||||||||| |||||||||||||||||
Sbjct: 386 cgacgacggggaagtcgacgacgacgaccttgtcga 351



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 50  tttgaacggaatgcacggaatagag 74
           |||||||||||||||||| ||||||
Sbjct: 655 tttgaacggaatgcacgggatagag 631
to top
>dbj|AK061232.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B02, full
           insert sequence
          Length = 1046

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 331 cgacgaaggggaagtcgaggacgacgaccttgtcga 366
           |||||| ||||||||||| |||||||||||||||||
Sbjct: 725 cgacgacggggaagtcgacgacgacgaccttgtcga 690



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 50  tttgaacggaatgcacggaatagag 74
           |||||||||||||||||| ||||||
Sbjct: 991 tttgaacggaatgcacgggatagag 967
to top
>dbj|AK058243.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H08, full
           insert sequence
          Length = 712

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 331 cgacgaaggggaagtcgaggacgacgaccttgtcga 366
           |||||| ||||||||||| |||||||||||||||||
Sbjct: 388 cgacgacggggaagtcgacgacgacgaccttgtcga 353



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 50  tttgaacggaatgcacggaatagag 74
           |||||||||||||||||| ||||||
Sbjct: 657 tttgaacggaatgcacgggatagag 633
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                   
Query: 331     cgacgaaggggaagtcgaggacgacgaccttgtcga 366
               |||||| ||||||||||| |||||||||||||||||
Sbjct: 2334492 cgacgacggggaagtcgacgacgacgaccttgtcga 2334527



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 50      tttgaacggaatgcacggaatagag 74
               |||||||||||||||||| ||||||
Sbjct: 2334223 tttgaacggaatgcacgggatagag 2334247
to top
>gb|AY107988.1| Zea mays PCO086949 mRNA sequence
          Length = 861

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 321 ggcttggcaacgacgaaggggaagtcgaggacgacgaccttgtcga 366
           |||||||| ||||||| ||||||||||| |||||  ||||||||||
Sbjct: 592 ggcttggcgacgacgacggggaagtcgacgacgagcaccttgtcga 547
to top
>emb|AL713860.12| Mouse DNA sequence from clone RP23-446K18 on chromosome 11 Contains the
              Ccl8 and Ccl1 genes for chemokine (C-C motif) ligand 8 and
              1, complete sequence
          Length = 129489

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 184    atagatagatggatggtggctat 206
              |||||||||||||||||||||||
Sbjct: 129137 atagatagatggatggtggctat 129159
to top
>emb|AL731866.8| Mouse DNA sequence from clone RP23-37F22 on chromosome 11 Contains
            the 5' end of a variant of the Ccl1 gene for chemokine
            (C-C motif) ligand 1, complete sequence
          Length = 105085

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 184  atagatagatggatggtggctat 206
            |||||||||||||||||||||||
Sbjct: 1648 atagatagatggatggtggctat 1670
to top
>emb|AL663031.15| Mouse DNA sequence from clone RP23-29H5 on chromosome 11 Contains the
             3' end of the Sox30 gene for SRY-box containing gene 30, a
             large ribosomal protein (Rplp1) P1 pseudogene, a novel
             gene, the Adam19 gene for a disintegrin and
             metalloproteinase domain 19 (meltrin beta), the 3' end of
             a novel gene and a CpG island, complete sequence
          Length = 181021

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 160   atcattcacagctgcagccttc 181
             ||||||||||||||||||||||
Sbjct: 37515 atcattcacagctgcagccttc 37536
to top
>emb|BX649544.12| Zebrafish DNA sequence from clone CH211-123F23 in linkage group 9,
            complete sequence
          Length = 168473

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 178  cttcagatagatagatggatgg 199
            ||||||||||||||||||||||
Sbjct: 3068 cttcagatagatagatggatgg 3047
to top
>gb|AC154749.2| Mus musculus BAC clone RP24-399C21 from 17, complete sequence
          Length = 155483

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 178    cttcagatagatagatggatgg 199
              ||||||||||||||||||||||
Sbjct: 114808 cttcagatagatagatggatgg 114787
to top
>emb|AL606705.23| Zebrafish DNA sequence from clone BUSM1-175P5 in linkage group 15,
             complete sequence
          Length = 92464

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 178   cttcagatagatagatggatgg 199
             ||||||||||||||||||||||
Sbjct: 15230 cttcagatagatagatggatgg 15209
to top
>gb|AY103871.1| Zea mays PCO072881 mRNA sequence
          Length = 983

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 344 gtcgaggacgacgaccttgtcg 365
           ||||||||||||||||||||||
Sbjct: 322 gtcgaggacgacgaccttgtcg 301
to top
>gb|AC103810.5| Homo sapiens chromosome 17, clone RP11-927P21, complete sequence
          Length = 203192

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 182    agatagatagatggatggtgg 202
              |||||||||||||||||||||
Sbjct: 148013 agatagatagatggatggtgg 148033
to top
>gb|AC165265.2| Mus musculus BAC clone RP23-15M14 from chromosome 13, complete sequence
          Length = 237830

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 182    agatagatagatggatggtgg 202
              |||||||||||||||||||||
Sbjct: 188750 agatagatagatggatggtgg 188730
to top
>gb|AC109587.2| Homo sapiens chromosome 3 clone CTD-2013N24, complete sequence
          Length = 156614

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 275  acagacagataccagggtggg 295
            |||||||||||||||||||||
Sbjct: 6012 acagacagataccagggtggg 5992
to top
>gb|AC104166.2| Homo sapiens chromosome 3 clone RP11-199N21, complete sequence
          Length = 171705

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 275    acagacagataccagggtggg 295
              |||||||||||||||||||||
Sbjct: 171446 acagacagataccagggtggg 171426
to top
>emb|BX276188.11| Zebrafish DNA sequence from clone CH211-245A19, complete sequence
          Length = 177660

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 133   aagcaaaaaataggaggcctt 153
             |||||||||||||||||||||
Sbjct: 62981 aagcaaaaaataggaggcctt 63001
to top
>gb|AC159207.2| Mus musculus BAC clone RP23-150H14 from chromosome 13, complete sequence
          Length = 191824

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 182    agatagatagatggatggtgg 202
              |||||||||||||||||||||
Sbjct: 133613 agatagatagatggatggtgg 133633
to top
>gb|AC021631.6|AC021631 Mus musculus, clone RP23-38J11, complete sequence
          Length = 160618

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 182   agatagatagatggatggtgg 202
             |||||||||||||||||||||
Sbjct: 52155 agatagatagatggatggtgg 52175



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 182   agatagatagatggatggtgg 202
             |||||||||||||||||||||
Sbjct: 51805 agatagatagatggatggtgg 51825
to top
>emb|BX510640.4| Zebrafish DNA sequence from clone RP71-57J15 in linkage group 19,
             complete sequence
          Length = 139917

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   cagatagatagatggatggtg 201
             |||||||||||||||||||||
Sbjct: 53990 cagatagatagatggatggtg 53970
to top
>emb|AL136520.3|CNS01DW9 Human chromosome 14 DNA sequence BAC C-2325K12 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 171744

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 214   aatggtaggcacctttcagacagtg 238
             |||||||||||||||| ||||||||
Sbjct: 39614 aatggtaggcacctttaagacagtg 39638
to top
>gb|AC003663.1|AC003663 Homo sapiens chromosome 17, clone HCIT87G17, complete sequence
          Length = 132070

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 182   agatagatagatggatggtgg 202
             |||||||||||||||||||||
Sbjct: 27515 agatagatagatggatggtgg 27535
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 182      agatagatagatggatggtg 201
                ||||||||||||||||||||
Sbjct: 30640674 agatagatagatggatggtg 30640693
to top
>emb|CR626888.9| Zebrafish DNA sequence from clone CH211-250B7 in linkage group 16,
             complete sequence
          Length = 156550

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 17809 agatagatagatggatggtg 17828
to top
>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete
              sequence
          Length = 157970

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    agatagatagatggatggtg 201
              ||||||||||||||||||||
Sbjct: 121718 agatagatagatggatggtg 121699
to top
>emb|AL954816.21| Zebrafish DNA sequence from clone DKEY-38P6 in linkage group 10,
             complete sequence
          Length = 97637

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 56930 agatagatagatggatggtg 56911
to top
>gb|AC123921.3| Mus musculus BAC clone RP24-180J14 from chromosome 8, complete sequence
          Length = 183936

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    gatagatagatggatggtgg 202
              ||||||||||||||||||||
Sbjct: 123459 gatagatagatggatggtgg 123440
to top
>emb|BX927349.12| Zebrafish DNA sequence from clone DKEY-84K15 in linkage group 17,
             complete sequence
          Length = 159649

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tcagatagatagatggatgg 199
             ||||||||||||||||||||
Sbjct: 29069 tcagatagatagatggatgg 29088
to top
>emb|BX537265.19| Zebrafish DNA sequence from clone DKEY-79H4 in linkage group 5,
             complete sequence
          Length = 147095

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 77296 agatagatagatggatggtg 77315
to top
>gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete sequence
          Length = 114664

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   cagatagatagatggatggt 200
             ||||||||||||||||||||
Sbjct: 48885 cagatagatagatggatggt 48866
to top
>gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete sequence
          Length = 125855

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   cagatagatagatggatggt 200
             ||||||||||||||||||||
Sbjct: 93194 cagatagatagatggatggt 93213
to top
>emb|BX293991.12| Zebrafish DNA sequence from clone CH211-261I24 in linkage group 11,
            complete sequence
          Length = 198825

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 181  cagatagatagatggatggt 200
            ||||||||||||||||||||
Sbjct: 5789 cagatagatagatggatggt 5808



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 181  cagatagatagatggatggt 200
            ||||||||||||||||||||
Sbjct: 5458 cagatagatagatggatggt 5477
to top
>emb|AL359813.23| Human DNA sequence from clone RP5-895C5 on chromosome 6p12.3-21.2
             Contains three novel genes (FLJ00002, FLJ30818, FLJ14207)
             and three CpG islands, complete sequence
          Length = 102892

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   tcagatagatagatggatgg 199
             ||||||||||||||||||||
Sbjct: 42724 tcagatagatagatggatgg 42705
to top
>emb|BX005361.16| Zebrafish DNA sequence from clone DKEY-19C8 in linkage group 8, complete
              sequence
          Length = 222110

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    agatagatagatggatggtg 201
              ||||||||||||||||||||
Sbjct: 147320 agatagatagatggatggtg 147301



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    agatagatagatggatggtg 201
              ||||||||||||||||||||
Sbjct: 145278 agatagatagatggatggtg 145259
to top
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01,
             complete sequence
          Length = 186325

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tcagatagatagatggatgg 199
             ||||||||||||||||||||
Sbjct: 43038 tcagatagatagatggatgg 43057
to top
>emb|CR354594.13| Zebrafish DNA sequence from clone DKEY-173F1 in linkage group 13,
             complete sequence
          Length = 196408

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 49067 agatagatagatggatggtg 49086
to top
>emb|BX511081.8| Zebrafish DNA sequence from clone DKEY-6B12 in linkage group 21,
            complete sequence
          Length = 210246

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  agatagatagatggatggtg 201
            ||||||||||||||||||||
Sbjct: 2098 agatagatagatggatggtg 2117
to top
>emb|CR293511.11| Zebrafish DNA sequence from clone DKEY-93H22 in linkage group 1,
             complete sequence
          Length = 178953

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 31546 agatagatagatggatggtg 31565



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  agatagatagatggatggtg 201
            ||||||||||||||||||||
Sbjct: 6414 agatagatagatggatggtg 6433
to top
>gb|AC078867.11| Homo sapiens 3 BAC RP11-605F14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 132701

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    atgaaatggtaggcaccttt 229
              ||||||||||||||||||||
Sbjct: 101359 atgaaatggtaggcaccttt 101378
to top
>emb|BX897670.7| Zebrafish DNA sequence from clone DKEY-117L15 in linkage group 8,
             complete sequence
          Length = 107559

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 71958 agatagatagatggatggtg 71939
to top
>emb|AL954819.21| Zebrafish DNA sequence from clone CH211-1F7 in linkage group 8, complete
              sequence
          Length = 177929

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    agatagatagatggatggtg 201
              ||||||||||||||||||||
Sbjct: 172235 agatagatagatggatggtg 172216
to top
>emb|BX649598.17| Zebrafish DNA sequence from clone CH211-214P12 in linkage group 18,
              complete sequence
          Length = 213741

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    agatagatagatggatggtg 201
              ||||||||||||||||||||
Sbjct: 151701 agatagatagatggatggtg 151682



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    agatagatagatggatggtg 201
              ||||||||||||||||||||
Sbjct: 143394 agatagatagatggatggtg 143375
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 180      tcagatagatagatggatgg 199
                ||||||||||||||||||||
Sbjct: 29370022 tcagatagatagatggatgg 29370041
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 182      agatagatagatggatggtg 201
                ||||||||||||||||||||
Sbjct: 17066135 agatagatagatggatggtg 17066116
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 182      agatagatagatggatggtg 201
                ||||||||||||||||||||
Sbjct: 30732096 agatagatagatggatggtg 30732115
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 170      gctgcagccttcagatagatagat 193
                |||||||| |||||||||||||||
Sbjct: 20087845 gctgcagctttcagatagatagat 20087822
to top
>emb|AL929105.27| Zebrafish DNA sequence from clone CH211-142D6 in linkage group 7,
             complete sequence
          Length = 176147

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 81354 agatagatagatggatggtg 81373
to top
>emb|AL954670.11| Zebrafish DNA sequence from clone CH211-274J15 in linkage group 10,
             complete sequence
          Length = 148765

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 63678 agatagatagatggatggtg 63659
to top
>emb|BX465202.4| Zebrafish DNA sequence from clone CH211-191G24 in linkage group 2,
              complete sequence
          Length = 170771

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    agatagatagatggatggtg 201
              ||||||||||||||||||||
Sbjct: 118805 agatagatagatggatggtg 118824
to top
>emb|BX005342.14| Zebrafish DNA sequence from clone DKEY-81P7, complete sequence
          Length = 257502

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    agatagatagatggatggtg 201
              ||||||||||||||||||||
Sbjct: 168864 agatagatagatggatggtg 168845
to top
>dbj|AP006057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:B1342C04
          Length = 172097

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  agatagatagatggatggtg 201
            ||||||||||||||||||||
Sbjct: 6892 agatagatagatggatggtg 6873
to top
>dbj|AP005655.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0025H07
          Length = 145605

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 59794 agatagatagatggatggtg 59775
to top
>dbj|AP004847.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1298_H07
          Length = 106434

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 170   gctgcagccttcagatagatagat 193
             |||||||| |||||||||||||||
Sbjct: 36368 gctgcagctttcagatagatagat 36345
to top
>emb|BX005239.8| Zebrafish DNA sequence from clone CH211-144F7 in linkage group 18,
             complete sequence
          Length = 168745

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 51925 agatagatagatggatggtg 51906
to top
>emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in linkage group 1,
             complete sequence
          Length = 130339

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 60041 agatagatagatggatggtg 60060



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 40629 agatagatagatggatggtg 40648
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 331     cgacgaaggggaagtcgaggacgacgac 358
               |||||||| ||||| |||||||||||||
Sbjct: 2401098 cgacgaagaggaagacgaggacgacgac 2401071
to top
>gb|AC144813.3| Mus musculus BAC clone RP24-324I23 from 9, complete sequence
          Length = 146104

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   gatagatagatggatggtgg 202
             ||||||||||||||||||||
Sbjct: 66764 gatagatagatggatggtgg 66783



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   gatagatagatggatggtgg 202
             ||||||||||||||||||||
Sbjct: 66577 gatagatagatggatggtgg 66596
to top
>emb|BX927123.8| Zebrafish DNA sequence from clone CH211-278N15 in linkage group 20,
             complete sequence
          Length = 121145

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 51925 agatagatagatggatggtg 51906
to top
>emb|BX465206.15| Zebrafish DNA sequence from clone DKEYP-25A3 in linkage group 19,
             complete sequence
          Length = 161014

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 47344 agatagatagatggatggtg 47363



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 14617 agatagatagatggatggtg 14636
to top
>emb|BX088706.8| Zebrafish DNA sequence from clone CH211-196C2 in linkage group 22,
              complete sequence
          Length = 145064

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    agatagatagatggatggtg 201
              ||||||||||||||||||||
Sbjct: 113226 agatagatagatggatggtg 113207
to top
>emb|BX324163.8| Zebrafish DNA sequence from clone DKEY-106C17 in linkage group 3,
              complete sequence
          Length = 168712

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    agatagatagatggatggtg 201
              ||||||||||||||||||||
Sbjct: 168547 agatagatagatggatggtg 168566
to top
>emb|BX936463.13| Zebrafish DNA sequence from clone DKEY-4G17 in linkage group 17,
             complete sequence
          Length = 232846

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tcagatagatagatggatgg 199
             ||||||||||||||||||||
Sbjct: 21411 tcagatagatagatggatgg 21430
to top
>emb|CR854851.12| Zebrafish DNA sequence from clone DKEY-98D7 in linkage group 16, complete
              sequence
          Length = 218036

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    cagatagatagatggatggt 200
              ||||||||||||||||||||
Sbjct: 134828 cagatagatagatggatggt 134847
to top
>emb|AL833804.16| Mouse DNA sequence from clone RP23-20A6 on chromosome 2, complete
              sequence
          Length = 200521

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    tcagatagatagatggatgg 199
              ||||||||||||||||||||
Sbjct: 180709 tcagatagatagatggatgg 180728
to top
>emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chromosome 4, complete
             sequence
          Length = 216239

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 73396 agatagatagatggatggtg 73377
to top
>emb|CR354395.20| Zebrafish DNA sequence from clone DKEYP-45G11 in linkage group 12,
             complete sequence
          Length = 160211

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   agatagatagatggatggtg 201
             ||||||||||||||||||||
Sbjct: 82083 agatagatagatggatggtg 82102
to top
>emb|CR936437.14| Zebrafish DNA sequence from clone CH211-197I23 in linkage group 3,
            complete sequence
          Length = 96056

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  agatagatagatggatggtg 201
            ||||||||||||||||||||
Sbjct: 7183 agatagatagatggatggtg 7202



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  agatagatagatggatggtg 201
            ||||||||||||||||||||
Sbjct: 1835 agatagatagatggatggtg 1854


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,104,487
Number of Sequences: 3902068
Number of extensions: 4104487
Number of successful extensions: 88887
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88176
Number of HSP's gapped (non-prelim): 626
length of query: 371
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 349
effective length of database: 17,147,199,772
effective search space: 5984372720428
effective search space used: 5984372720428
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top