ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet99f03 |
|---|---|
| Clone Library Name | barley_pub |
>SYFA_TROW8 (Q83HH3) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 336 Score = 30.8 bits (68), Expect = 0.92 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Frame = +2 Query: 2 THNPSIHSLVHTLCSINLHCAQLGRG---HLARSMMMIQINTQSTCSYTLIHDVQVHMHI 172 TH P H L +C N+ L +G LAR + ++N + C+Y + I Sbjct: 208 THTPVFHQLEGLVCDRNITLGHL-KGTVEDLARYLFGAEVNLRMRCNYFPFTEPSAEFDI 266 Query: 173 SSDG 184 S DG Sbjct: 267 SRDG 270
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 263 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = -3 Query: 289 ENLFDHIADPVXXXXXXXXXXXAPG 215 ENLFDH+ADPV PG Sbjct: 238 ENLFDHVADPVANNAWAYATNFVPG 262
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor| (LHCII type I CAB-36) (LHCP) Length = 265 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = -3 Query: 289 ENLFDHIADPVXXXXXXXXXXXAPG 215 ENLFDH+ADPV PG Sbjct: 240 ENLFDHVADPVANNAWAYATNFVPG 264
>PYRB_BIFLO (Q8G655) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 326 Score = 28.9 bits (63), Expect = 3.5 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = +2 Query: 2 THNPSIHSLVHTLCSI-NLHCAQLGRGHLARSMMMI-QINTQSTCSYTLIHDV 154 T ++HSL+ TLC N+ + L +I +IN +CSY + D+ Sbjct: 167 TFGRTVHSLIETLCRFGNVRFVLISPDELKTPQYVIDRINATDSCSYVEVRDL 219
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor| (LHCII type II CAB-151) (LHCP) Length = 265 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = -3 Query: 289 ENLFDHIADPVXXXXXXXXXXXAPG 215 ENLFDH+ADPV PG Sbjct: 240 ENLFDHLADPVANNAWAYATNFVPG 264
>UVRA_CHLTR (O84337) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 1786 Score = 28.9 bits (63), Expect = 3.5 Identities = 22/66 (33%), Positives = 30/66 (45%) Frame = +2 Query: 11 PSIHSLVHTLCSINLHCAQLGRGHLARSMMMIQINTQSTCSYTLIHDVQVHMHISSDGQT 190 PSIH + TLC++ L LGR + S IQ + +Y L+ V+ D T Sbjct: 780 PSIHQKIETLCTLGLQYLPLGRPLYSLSGGEIQ---RLKLAYELLAPVKHPTLYVLDEPT 836 Query: 191 DGC*TH 208 G TH Sbjct: 837 TGLHTH 842
>UVRA_CHLPN (Q9Z985) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 1826 Score = 28.5 bits (62), Expect = 4.6 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 8 NPSIHSLVHTLCSINLHCAQLGR 76 +P IH +H LCS+ L LGR Sbjct: 781 HPKIHEKIHALCSLRLDYLPLGR 803
>SYFA_TROWT (Q83GS9) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 336 Score = 28.1 bits (61), Expect = 6.0 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Frame = +2 Query: 2 THNPSIHSLVHTLCSINLHCAQLGRG---HLARSMMMIQINTQSTCSYTLIHDVQVHMHI 172 TH P H L +C N+ L +G LA + ++N + C+Y + I Sbjct: 208 THTPVFHQLEGLVCDRNITLGHL-KGTVEDLAGYLFGAEVNLRMRCNYFPFTEPSAEFDI 266 Query: 173 SSDG 184 S DG Sbjct: 267 SRDG 270
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor| (LHCII type I CAB-37) (LHCP) Length = 265 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -3 Query: 289 ENLFDHIADPVXXXXXXXXXXXAPG 215 ENL+DH+ADPV PG Sbjct: 240 ENLYDHVADPVANNAWAFATNFVPG 264
>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (Smooth muscle calcium channel blocker receptor) Length = 2171 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +2 Query: 104 IQINTQSTCSYTLIHDVQV-HMHISSDGQTDG 196 + T+STC T++H+ Q+ H +IS G G Sbjct: 20 LSAETESTCKGTVVHEAQLNHFYISPGGSNYG 51
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -3 Query: 289 ENLFDHIADPVXXXXXXXXXXXAPGS 212 ENLFDH+ DPV APGS Sbjct: 243 ENLFDHLDDPVANNAWVFATKFAPGS 268
>SIRB2_ECOLI (Q46755) Protein sirB2| Length = 130 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +3 Query: 213 LPGAKLVAKAHALLFTGSAMW 275 L G L+AKAH L F+G A W Sbjct: 54 LSGIALMAKAHILPFSGQAQW 74
>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)| Length = 541 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -2 Query: 272 HRRPSEQQRVGLRHQLRPRKLNVFSSHPSVHRTRYACVLVRRGSTCS 132 H++P +QQ+ L HQ +P++ H H A + RR S+ S Sbjct: 356 HQQPQQQQQQQLHHQQQPQQ----HQHQQQHPDSTATDVARRSSSSS 398
>CB22_PINSY (P15192) Chlorophyll a-b binding protein type 2 member 2| (Chlorophyll a-b binding protein type II 2) (CAB) (LHCP) (Fragment) Length = 150 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -3 Query: 289 ENLFDHIADPVXXXXXXXXXXXAPG 215 ENL+DH+ADPV PG Sbjct: 125 ENLYDHLADPVANNAWAYATNFVPG 149
>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast| precursor (CAB) (LHCP) Length = 266 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -3 Query: 289 ENLFDHIADPVXXXXXXXXXXXAPG 215 ENL+DH+ADPV PG Sbjct: 241 ENLYDHLADPVANNAWAYATNFVPG 265
>RECN_XYLFT (Q87BS5) DNA repair protein recN (Recombination protein N)| Length = 557 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +2 Query: 17 IHSLVHTLCSINLHCAQLGRGHLARSMMMIQINTQSTCSYTLIHDVQV 160 +H+ HTL +N H A+LG MIQ++ T + +D+ + Sbjct: 245 LHAARHTLSRVNEHDARLGEVETLLDNAMIQVDEALTLLDRIHNDLNI 292 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,056,063 Number of Sequences: 219361 Number of extensions: 715529 Number of successful extensions: 2242 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2216 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2239 length of database: 80,573,946 effective HSP length: 72 effective length of database: 64,779,954 effective search space used: 1554718896 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
