ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet99d10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit precursor mRNA, complete cds Length = 990 Score = 392 bits (198), Expect = e-106 Identities = 204/206 (99%) Strand = Plus / Minus Query: 1 atacaagattgggttcagtttcttaaatacaagagaggttccatttctccatgatcctat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 921 atacaagattgggttcagtttcttaaatacaagagaggttccatttctccatgatcctat 862 Query: 61 cagctcctacaccaagcccacacagatcgacaccacaagccctcatcctccgctgcccat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 861 cagctcctacaccaagcccacacagatcgacaccacaagccctcatcctccgctgcccat 802 Query: 121 ctgacttgggaccgactagccaaccacgcacgcatggcagctagttagtagccgatgtcg 180 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 801 ctgacttgggaccgactagccaaccacgcacgcatggcagctacttagtagccgatgtcg 742 Query: 181 gcgtcgtcaacgacgaggtcgccgtt 206 |||||||| ||||||||||||||||| Sbjct: 741 gcgtcgtcgacgacgaggtcgccgtt 716
>ref|NM_184976.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1038 Score = 61.9 bits (31), Expect = 7e-07 Identities = 49/55 (89%) Strand = Plus / Minus Query: 19 tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 73 |||||||| ||||| ||| ||||||| ||||||||||||||||||| ||||||| Sbjct: 921 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 867 Score = 52.0 bits (26), Expect = 7e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 167 agtagccgatgtcggcgtcgtcaacgacgaggtcgccg 204 ||||||||||||| |||||||| |||||||||| |||| Sbjct: 778 agtagccgatgtcagcgtcgtcgacgacgaggttgccg 741
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 7e-07 Identities = 49/55 (89%) Strand = Plus / Plus Query: 19 tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 73 |||||||| ||||| ||| ||||||| ||||||||||||||||||| ||||||| Sbjct: 31969219 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 31969273 Score = 52.0 bits (26), Expect = 7e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 167 agtagccgatgtcggcgtcgtcaacgacgaggtcgccg 204 ||||||||||||| |||||||| |||||||||| |||| Sbjct: 31969474 agtagccgatgtcagcgtcgtcgacgacgaggttgccg 31969511
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence Length = 144306 Score = 61.9 bits (31), Expect = 7e-07 Identities = 49/55 (89%) Strand = Plus / Plus Query: 19 tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 73 |||||||| ||||| ||| ||||||| ||||||||||||||||||| ||||||| Sbjct: 61171 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 61225 Score = 52.0 bits (26), Expect = 7e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 167 agtagccgatgtcggcgtcgtcaacgacgaggtcgccg 204 ||||||||||||| |||||||| |||||||||| |||| Sbjct: 61426 agtagccgatgtcagcgtcgtcgacgacgaggttgccg 61463
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 7e-07 Identities = 49/55 (89%) Strand = Plus / Plus Query: 19 tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 73 |||||||| ||||| ||| ||||||| ||||||||||||||||||| ||||||| Sbjct: 32059731 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 32059785 Score = 52.0 bits (26), Expect = 7e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 167 agtagccgatgtcggcgtcgtcaacgacgaggtcgccg 204 ||||||||||||| |||||||| |||||||||| |||| Sbjct: 32059986 agtagccgatgtcagcgtcgtcgacgacgaggttgccg 32060023
>dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N02, full insert sequence Length = 967 Score = 61.9 bits (31), Expect = 7e-07 Identities = 49/55 (89%) Strand = Plus / Minus Query: 19 tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 73 |||||||| ||||| ||| ||||||| ||||||||||||||||||| ||||||| Sbjct: 890 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 836 Score = 52.0 bits (26), Expect = 7e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 167 agtagccgatgtcggcgtcgtcaacgacgaggtcgccg 204 ||||||||||||| |||||||| |||||||||| |||| Sbjct: 742 agtagccgatgtcagcgtcgtcgacgacgaggttgccg 705
>dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full insert sequence Length = 997 Score = 61.9 bits (31), Expect = 7e-07 Identities = 49/55 (89%) Strand = Plus / Minus Query: 19 tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 73 |||||||| ||||| ||| ||||||| ||||||||||||||||||| ||||||| Sbjct: 920 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 866 Score = 52.0 bits (26), Expect = 7e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 167 agtagccgatgtcggcgtcgtcaacgacgaggtcgccg 204 ||||||||||||| |||||||| |||||||||| |||| Sbjct: 777 agtagccgatgtcagcgtcgtcgacgacgaggttgccg 740
>dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C12, full insert sequence Length = 990 Score = 61.9 bits (31), Expect = 7e-07 Identities = 49/55 (89%) Strand = Plus / Minus Query: 19 tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 73 |||||||| ||||| ||| ||||||| ||||||||||||||||||| ||||||| Sbjct: 913 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 859 Score = 52.0 bits (26), Expect = 7e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 167 agtagccgatgtcggcgtcgtcaacgacgaggtcgccg 204 ||||||||||||| |||||||| |||||||||| |||| Sbjct: 765 agtagccgatgtcagcgtcgtcgacgacgaggttgccg 728
>gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit precursor (PSI-F) mRNA, complete cds Length = 996 Score = 61.9 bits (31), Expect = 7e-07 Identities = 49/55 (89%) Strand = Plus / Minus Query: 19 tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 73 |||||||| ||||| ||| ||||||| ||||||||||||||||||| ||||||| Sbjct: 901 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 847 Score = 52.0 bits (26), Expect = 7e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 167 agtagccgatgtcggcgtcgtcaacgacgaggtcgccg 204 ||||||||||||| |||||||| |||||||||| |||| Sbjct: 758 agtagccgatgtcagcgtcgtcgacgacgaggttgccg 721
>gb|AY103687.1| Zea mays PCO106710 mRNA sequence Length = 1242 Score = 44.1 bits (22), Expect = 0.17 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 157 gcagctagttagtagccgatgtcggcgtcgtcaacgacgaggtcgccgtt 206 ||||||||| ||||||||||||| |||||| ||||||||||| ||||| Sbjct: 802 gcagctagt-agtagccgatgtccttgtcgtcgacgacgaggtctccgtt 754
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 0.66 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 agtagccgatgtcggcgtcgtcaac 191 ||||||||||||||||| ||||||| Sbjct: 599732 agtagccgatgtcggcgccgtcaac 599756
>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland Research Institute) complete sequence Length = 230137 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tcttaaatacaagagaggtt 40 |||||||||||||||||||| Sbjct: 82654 tcttaaatacaagagaggtt 82673
>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete sequence Length = 173580 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 43 atttctccatgatcctatcagctcctac 70 ||||||||||||||| |||| ||||||| Sbjct: 156375 atttctccatgatccaatcacctcctac 156348
>gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, complete sequence Length = 150750 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 caagattgggttcagtttct 23 |||||||||||||||||||| Sbjct: 10979 caagattgggttcagtttct 10998
>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence Length = 167258 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ggttcagtttcttaaataca 31 |||||||||||||||||||| Sbjct: 17437 ggttcagtttcttaaataca 17456
>gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, complete sequence Length = 118755 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 caagattgggttcagtttct 23 |||||||||||||||||||| Sbjct: 14523 caagattgggttcagtttct 14504
>emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo sapiens (human) Length = 204955 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 caagattgggttcagtttct 23 |||||||||||||||||||| Sbjct: 141244 caagattgggttcagtttct 141225
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gagaggttccatttctccat 52 |||||||||||||||||||| Sbjct: 418732 gagaggttccatttctccat 418713 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,474,587 Number of Sequences: 3902068 Number of extensions: 1474587 Number of successful extensions: 98778 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98604 Number of HSP's gapped (non-prelim): 174 length of query: 206 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 184 effective length of database: 17,147,199,772 effective search space: 3155084758048 effective search space used: 3155084758048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
