ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet99d07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY835406.1| Hordeum vulgare Hs1 (Hs1) gene, complete cds Length = 7483 Score = 585 bits (295), Expect = e-164 Identities = 295/295 (100%) Strand = Plus / Minus Query: 5 tacatcaggctacttgatttaattgaatgtctcacggttaaatacttcctctgtgatact 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5576 tacatcaggctacttgatttaattgaatgtctcacggttaaatacttcctctgtgatact 5517 Query: 65 agaacactagaacagatggcatcacagtcacaacacacgcatctaggagtatctactgta 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5516 agaacactagaacagatggcatcacagtcacaacacacgcatctaggagtatctactgta 5457 Query: 125 ctcatgtatcgctactgagatgaatcactataggattgcaggctggggatcataggtaac 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5456 ctcatgtatcgctactgagatgaatcactataggattgcaggctggggatcataggtaac 5397 Query: 185 ttctagcctgcaaaattaccgatcgccgcggtttttggccgttcgaaaccttcagctccg 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5396 ttctagcctgcaaaattaccgatcgccgcggtttttggccgttcgaaaccttcagctccg 5337 Query: 245 ccctgacggaacagaggcggcggccatgtgctgaacccagtagtcggccaagaac 299 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5336 ccctgacggaacagaggcggcggccatgtgctgaacccagtagtcggccaagaac 5282
>gb|AF307333.1| Hordeum vulgare putative nematode-resistance protein (Hs1) mRNA, complete cds Length = 1404 Score = 127 bits (64), Expect = 2e-26 Identities = 64/64 (100%) Strand = Plus / Minus Query: 236 tcagctccgccctgacggaacagaggcggcggccatgtgctgaacccagtagtcggccaa 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1404 tcagctccgccctgacggaacagaggcggcggccatgtgctgaacccagtagtcggccaa 1345 Query: 296 gaac 299 |||| Sbjct: 1344 gaac 1341
>ref|NM_190662.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1425 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 acccagtagtcggccaagaac 299 ||||||||||||||||||||| Sbjct: 1376 acccagtagtcggccaagaac 1356
>gb|AY224522.1| Oryza sativa (japonica cultivar-group) isolate 20568 putative nematode-resistance protein mRNA, complete cds Length = 1425 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 acccagtagtcggccaagaac 299 ||||||||||||||||||||| Sbjct: 1376 acccagtagtcggccaagaac 1356
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 acccagtagtcggccaagaac 299 ||||||||||||||||||||| Sbjct: 36936353 acccagtagtcggccaagaac 36936373
>dbj|AP003415.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1402_H07 Length = 140620 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 acccagtagtcggccaagaac 299 ||||||||||||||||||||| Sbjct: 26657 acccagtagtcggccaagaac 26677
>dbj|AK099776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095E24, full insert sequence Length = 1873 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 acccagtagtcggccaagaac 299 ||||||||||||||||||||| Sbjct: 1493 acccagtagtcggccaagaac 1473
>dbj|AK106740.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-B03, full insert sequence Length = 2126 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 acccagtagtcggccaagaac 299 ||||||||||||||||||||| Sbjct: 96 acccagtagtcggccaagaac 116
>dbj|AK060734.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-A10, full insert sequence Length = 1950 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 acccagtagtcggccaagaac 299 ||||||||||||||||||||| Sbjct: 1628 acccagtagtcggccaagaac 1608 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,080,517 Number of Sequences: 3902068 Number of extensions: 2080517 Number of successful extensions: 38166 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38144 Number of HSP's gapped (non-prelim): 22 length of query: 299 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 277 effective length of database: 17,147,199,772 effective search space: 4749774336844 effective search space used: 4749774336844 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
