>YNQ5_YEAST (P53891) Hypothetical 46.2 kDa protein in SKO1-RPL44A intergenic|
           region
          Length = 406

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 141 EFERQNFVNRCPKLTTESSLPVY*FLLIAG 230
           + +RQ +VNR P+ T+E ++P    LL  G
Sbjct: 83  DLQRQGYVNRAPRFTSERAMPFVSVLLQRG 112

>LFTR_PHOPR (Q6LT10) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)|
           (L/F-transferase) (Leucyltransferase)
           (Phenyalanyltransferase)
          Length = 240

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = -1

Query: 173 APVHKILPFEFKMCWSERKF*RKSGFQL 90
           AP    LP EFK   S RKF RKSG+Q+
Sbjct: 67  APRAIFLPNEFKPSKSLRKFYRKSGYQI 94

>ERFB_ASPFU (Q4WWN2) Palmitoyltransferase erf2 (EC 2.3.1.-) (DHHC cysteine-rich|
           domain-containing protein erf2) (Ras protein
           acyltransferase)
          Length = 607

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 371 GSTPSTAQSQQEKTASRGSEAEPQV--DNNTSTSGQFGGEMEKS 246
           G+ P ++  Q+E   SRG+E    +  D NTS +  FG    +S
Sbjct: 148 GTFPQSSAPQEEAPPSRGTEFTDPIIPDRNTSNASPFGNTTSRS 191

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 377  PAGSTPSTAQSQQEKTASRGSEAEPQVDNN 288
            PAG TP+TA + Q  TASR +   P   +N
Sbjct: 1114 PAGPTPATAANPQNSTASRRTPNNPGNPSN 1143

>R51A1_MOUSE (Q8C551) RAD51-associated protein 1 (RAD51-interacting protein)|
           (RAB22)
          Length = 337

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 380 PPAGSTPSTAQSQQEKTAS-RGSEAEPQVDNNTSTSGQFGGEMEKSNLQAT 231
           P  GS  S+A   + ++A+  GSE++P  D +  +   FG    K + + T
Sbjct: 168 PSEGSDGSSANDTESESATGEGSESDPDFDESKESDEDFGVRRSKESKKKT 218

>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
            (214 kDa nucleoporin) (CAN protein)
          Length = 2090

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 377  PAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQF 267
            P+G TP++ Q      AS  ++ E  V +  S SGQF
Sbjct: 1174 PSGPTPASGQLSSGDKASGTAKIETAVTSTPSASGQF 1210

>CSPG2_HUMAN (P13611) Versican core protein precursor (Large fibroblast|
            proteoglycan) (Chondroitin sulfate proteoglycan core
            protein 2) (PG-M) (Glial hyaluronate-binding protein)
            (GHAP)
          Length = 3396

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 362  PSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGEMEKSNL 240
            P+T+    EK+  R S  E +V   TST GQ    ME S L
Sbjct: 885  PTTSTGIAEKSTLRDSTTEEKVPPITSTEGQVYATMEGSAL 925

>TTC7A_HUMAN (Q9ULT0) Tetratricopeptide repeat protein 7A (TPR repeat protein 7)|
          Length = 858

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 11  TCFHEALWI-QIFLQHILQESNNN 79
           TCF  A WI Q+FLQ + + +NN+
Sbjct: 198 TCFERASWIAQVFLQELEKTTNNS 221

>CAPP_PASMU (Q9CN89) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 879

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/73 (20%), Positives = 36/73 (49%)
 Frame = -3

Query: 273 TIWRRDGKEQLTGNCQLLVKTNRQVEMIQL*AWGTGSQNSAVRIQDVLV*AKILTQKWVP 94
           T+ R D +++ T + + + +  R + +     W   S   A  I+++     +L ++W P
Sbjct: 388 TLSRLDIRQESTRHAEAIAEITRYIGLGDYAQWSE-SDKQAFLIKELSSRRPLLPREWQP 446

Query: 93  ATHIRLLLDSCNI 55
           +   + +LD+C +
Sbjct: 447 SAATQEVLDTCRV 459

>INSR_AEDAE (Q93105) Insulin-like receptor precursor (EC 2.7.10.1) (MIR)|
           [Contains: Insulin-like receptor alpha chain;
           Insulin-like receptor beta chain]
          Length = 1390

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
 Frame = +1

Query: 253 SISPPNCPEVLVLLSTC-------GSASDPREAVFSCCDCAVLGVDPAG 378
           +I PP CP+       C       G  + P  +  SC  C  L +DPAG
Sbjct: 227 TICPPECPKACSKTGVCCDAESCLGGCNLPNTS--SCSVCRHLSIDPAG 273

>MSA2_PLAF9 (Q03994) Merozoite surface antigen 2 precursor (MSA-2)|
          Length = 302

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 383 NPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGEMEKSN 243
           +P   +T +T  +  +  AS  + +E +  NN  T+ +  GE++K N
Sbjct: 125 SPSTPATTTTTTTTNDAEASTSTSSENRNHNNAETNPKGKGEVQKPN 171

>BCL9_HUMAN (O00512) B-cell lymphoma 9 protein (Bcl-9) (Legless homolog)|
          Length = 1426

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -1

Query: 377 PAGSTPSTAQSQQEKTAS----RGSEAEPQVDNNTSTSGQFGGEMEKS 246
           P+G+T S+ +S+QE              PQ+D+  S  G+ GG   +S
Sbjct: 12  PSGNTQSSPKSKQEVMVRPPTVMSPSGNPQLDSKFSNQGKQGGSASQS 59

>GRPE_PROMM (Q7V9C9) Protein grpE (HSP-70 cofactor)|
          Length = 237

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 380 PPAGSTPSTAQSQQEKTASRGSEAEP 303
           P +G++PS+AQ   + TA+   EA+P
Sbjct: 207 PQSGASPSSAQPNDDSTATFQGEADP 232

>MSA2_PLAFI (Q03644) Merozoite surface antigen 2 precursor (MSA-2)|
          Length = 300

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 383 NPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGEMEKSN 243
           +P   +T +T  +  +  AS  + +E +  NN  T+ +  GE++K N
Sbjct: 123 SPSTPATTTTTTTTNDAEASTSTSSENRNHNNAETNPKGKGEVQKPN 169

>MTA1_CELCE (P31974) Modification methylase AluI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase AluI) (M.AluI)
          Length = 521

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 325 HVDLRLSHRSTITLVLQDNLEARWKRATYRQL 230
           +VDLRL+   T+ +   D+LE+  +RAT R L
Sbjct: 253 NVDLRLTETETLWIDAWDDLESTIRRATGRPL 284

>PAK6_HUMAN (Q9NQU5) Serine/threonine-protein kinase PAK 6 (EC 2.7.11.1)|
           (p21-activated kinase 6) (PAK-6) (PAK-5)
          Length = 681

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 383 NPPAGSTPSTAQSQQEKTASRGS-EAEPQVDNNTSTSGQFGGE 258
           +PP  S P+       K A  GS EA PQ     S +G+ GGE
Sbjct: 202 SPPGASPPTGTNRHGMKAAKHGSEEARPQSCLVGSATGRPGGE 244

>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)|
          Length = 1425

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -1

Query: 377 PAGSTPSTAQSQQEKTAS----RGSEAEPQVDNNTSTSGQFGGEMEKS 246
           P+G+T S+ +S+QE              PQ+D+  S  G+ GG   +S
Sbjct: 12  PSGNTQSSPKSKQEVMVRPPTVMSPSGNPQLDSKFSNQGKPGGSASQS 59

>MSA2_PLAFZ (Q03645) Merozoite surface antigen 2 precursor (MSA-2)|
          Length = 300

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 380 PPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGEMEKSN 243
           P   +T +T  +  +  AS  + +E +  NN  T+ +  GE++K N
Sbjct: 124 PSTPATTTTTTTTNDAEASTSTSSENRNHNNAETNPKGKGEVQKPN 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,365,995
Number of Sequences: 219361
Number of extensions: 1015768
Number of successful extensions: 2498
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2497
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)