ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet99c10 |
|---|---|
| Clone Library Name | barley_pub |
>YL152_YEAST (P54072) Protein YLR152C| Length = 576 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = +2 Query: 50 VPWLEANFSSIKLKVNELPRSGILLNITENITRYLSN 160 +PW++A F + + V++ P +LN + T Y+ N Sbjct: 412 IPWVKACFVTTYVHVHKAPDGEPVLNFLMDFTEYIGN 448
>ITAE_MOUSE (Q60677) Integrin alpha-E precursor (Integrin alpha M290) (CD103| antigen) [Contains: Integrin alpha-E light chain; Integrin alpha-E heavy chain] Length = 1167 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +3 Query: 183 SLLLHLDGKSTQVILMVQNSKSSCGGRSLKCYIISWALDEVLC 311 S LLHLD + Q L+V S+ +L IS + DE+ C Sbjct: 41 SSLLHLDPSNNQTCLLVARRSSNRNTAALYRCAISISPDEIAC 83
>RSD1_YEAST (P32368) Recessive suppressor of secretory defect| Length = 623 Score = 27.7 bits (60), Expect = 7.5 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Frame = +2 Query: 80 IKLKVNELPRSGILLNITENITRYLSNIFYRPGFQSIVT--FRWQIHSSYSHGSK-LQIQ 250 IKLK+N R I+ N E R+ ++FYR SIV+ F +I S + K L++ Sbjct: 62 IKLKLN---RYAIIANTVEETGRFNGHVFYRVLQHSIVSTKFNSRIDSEEAEYIKLLELH 118 Query: 251 LRRS 262 L+ S Sbjct: 119 LKNS 122
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 29 PSKIRLSVPWLEANFSSIKLKVNELPRSGI 118 P I LS+P +E N +S K KV+ SGI Sbjct: 464 PLAIELSLPHIEGNLTSAKSKVHTPASSGI 493
>RPE_ENCCU (Q8SRP6) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)| (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) Length = 217 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +2 Query: 35 KIRLSVPWLEANFSSIKLKVNELPRSGIL-LNITENITRYLSNIFYRP 175 K R+ + L+ NF +++ ++ EL R+G+ +++ T ++ NI + P Sbjct: 7 KKRIGISILDCNFGNLEEELGELKRNGVTNIHLDVMDTTFVKNITFGP 54
>HFLK_BUCAI (P57631) Protein hflK| Length = 406 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Frame = +2 Query: 56 WLEANFSSIKL----KVNELPRSGILLNITENITRYLSNIFYR 172 W F+ +K V EL SGI+L EN+ R N+ Y+ Sbjct: 111 WRPVFFNEVKPVNVETVRELATSGIMLTADENVVRVEMNVQYK 153
>CH60_STAAW (P63767) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 538 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/60 (26%), Positives = 29/60 (48%) Frame = +2 Query: 17 RS*IPSKIRLSVPWLEANFSSIKLKVNELPRSGILLNITENITRYLSNIFYRPGFQSIVT 196 R I ++++V L N ++ K NE+ + G + E I RY+S + G ++T Sbjct: 116 RQGIDKAVKVAVEALHENSQKVENK-NEIAQVGAISAADEEIGRYISEAMEKVGNDGVIT 174
>CH60_STAAS (Q6G7S8) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 538 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/60 (26%), Positives = 29/60 (48%) Frame = +2 Query: 17 RS*IPSKIRLSVPWLEANFSSIKLKVNELPRSGILLNITENITRYLSNIFYRPGFQSIVT 196 R I ++++V L N ++ K NE+ + G + E I RY+S + G ++T Sbjct: 116 RQGIDKAVKVAVEALHENSQKVENK-NEIAQVGAISAADEEIGRYISEAMEKVGNDGVIT 174
>CH60_STAAR (Q6GF43) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 538 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/60 (26%), Positives = 29/60 (48%) Frame = +2 Query: 17 RS*IPSKIRLSVPWLEANFSSIKLKVNELPRSGILLNITENITRYLSNIFYRPGFQSIVT 196 R I ++++V L N ++ K NE+ + G + E I RY+S + G ++T Sbjct: 116 RQGIDKAVKVAVEALHENSQKVENK-NEIAQVGAISAADEEIGRYISEAMEKVGNDGVIT 174
>CH60_STAAN (P99083) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 538 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/60 (26%), Positives = 29/60 (48%) Frame = +2 Query: 17 RS*IPSKIRLSVPWLEANFSSIKLKVNELPRSGILLNITENITRYLSNIFYRPGFQSIVT 196 R I ++++V L N ++ K NE+ + G + E I RY+S + G ++T Sbjct: 116 RQGIDKAVKVAVEALHENSQKVENK-NEIAQVGAISAADEEIGRYISEAMEKVGNDGVIT 174
>CH60_STAAM (P63766) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 538 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/60 (26%), Positives = 29/60 (48%) Frame = +2 Query: 17 RS*IPSKIRLSVPWLEANFSSIKLKVNELPRSGILLNITENITRYLSNIFYRPGFQSIVT 196 R I ++++V L N ++ K NE+ + G + E I RY+S + G ++T Sbjct: 116 RQGIDKAVKVAVEALHENSQKVENK-NEIAQVGAISAADEEIGRYISEAMEKVGNDGVIT 174
>CH60_STAAC (Q5HEH2) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 538 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/60 (26%), Positives = 29/60 (48%) Frame = +2 Query: 17 RS*IPSKIRLSVPWLEANFSSIKLKVNELPRSGILLNITENITRYLSNIFYRPGFQSIVT 196 R I ++++V L N ++ K NE+ + G + E I RY+S + G ++T Sbjct: 116 RQGIDKAVKVAVEALHENSQKVENK-NEIAQVGAISAADEEIGRYISEAMEKVGNDGVIT 174
>HFLK_ECOLI (P0ABC7) Protein hflK| Length = 419 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +2 Query: 92 VNELPRSGILLNITENITRYLSNIFYR 172 V EL SG++L EN+ R N+ YR Sbjct: 140 VRELAASGVMLTSDENVVRVEMNVQYR 166
>HFLK_ECO57 (P0ABC8) Protein hflK| Length = 419 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +2 Query: 92 VNELPRSGILLNITENITRYLSNIFYR 172 V EL SG++L EN+ R N+ YR Sbjct: 140 VRELAASGVMLTSDENVVRVEMNVQYR 166
>SPS2_DROME (Q9VKY8) Selenide, water dikinase 2 (EC 2.7.9.3) (Selenophosphate| synthetase 2) (Selenium donor protein 2) (Dsps2) Length = 370 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -3 Query: 263 ATSAAGFGVLNHENNLSGF 207 AT GFG+L H NNL+ F Sbjct: 256 ATDITGFGLLGHANNLAQF 274
>SYFA_BUCAP (P59056) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 329 Score = 27.3 bits (59), Expect = 9.9 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Frame = +2 Query: 35 KIRLSVPWLEANFSSIKLKVNELP----RSGILLNITENITRYLSNIFYRPGFQSIVTFR 202 KI L+ L+ K+ V+ LP ++G++ I IT Y+ N F + GF+SI F Sbjct: 75 KIELNKIILDKQIEKEKIDVS-LPGRRIKNGVIHPINHTIT-YIKNFFSKLGFESISGF- 131 Query: 203 WQIHSSYSHGSKLQI 247 +I Y + L I Sbjct: 132 -EIEDEYHNFDALNI 145 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,566,449 Number of Sequences: 219361 Number of extensions: 700838 Number of successful extensions: 1825 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1810 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1825 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
