ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet99c07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|S68728.1| LHC Ib-21=light-harvesting complex I [Hordeum vulgare=barley, Prato, mRNA Chloroplast, 878 nt] Length = 878 Score = 624 bits (315), Expect = e-176 Identities = 367/381 (96%), Gaps = 10/381 (2%) Strand = Plus / Minus Query: 32 ttcacaacagcggccgctacttaagctttacacattacaaaggttgccggccggagagcc 91 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 863 ttcacaacagcggccgctacttaagctttacacattacaaaggttgccc-----agagcc 809 Query: 92 gacgttgttgtacagttccagcacgcacggacggtgcgcgcgcagagccagcgtggcaag 151 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 808 -acgttgttgtacagttccagcacgcacggacggtgcgcgcg-agagccagcgtggcaag 751 Query: 152 gtgatcaaccaatggatcgactcagaaacatgaatgaaaaccatgcgctccggctcctcg 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 750 gtgatcaaccaatggatcgactcagaaacatgaatgaaaaccatgcgctccggctcctcg 691 Query: 212 atctcctctcagcccggtcggctccgctcaagggccgtagatatttctggggatgacgat 271 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 690 atctcg---cagcccggtcgcgtccgctcaagggccgtagatatttctggggatgacgat 634 Query: 272 gtcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggcc 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 633 gtcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggcc 574 Query: 332 ggtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccg 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 573 ggtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccg 514 Query: 392 cccgttcttgatctccttgag 412 ||||||||||||||||||||| Sbjct: 513 cccgttcttgatctccttgag 493
>gb|AF218305.1|AF218305 Hordeum vulgare chlorophyll a/b binding protein precursor (lhca1) mRNA, complete cds; nuclear gene for chloroplast product Length = 784 Score = 345 bits (174), Expect = 7e-92 Identities = 174/174 (100%) Strand = Plus / Minus Query: 239 tcaagggccgtagatatttctggggatgacgatgtcgccgatgttgttgtgccacgggtc 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 784 tcaagggccgtagatatttctggggatgacgatgtcgccgatgttgttgtgccacgggtc 725 Query: 299 cgcgaggtgcgtggccaggttctccagcgggccggtgccggggtacgccgactgctgcac 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 724 cgcgaggtgcgtggccaggttctccagcgggccggtgccggggtacgccgactgctgcac 665 Query: 359 gcagaaccccacgaacgccagcatcgccagccgcccgttcttgatctccttgag 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664 gcagaaccccacgaacgccagcatcgccagccgcccgttcttgatctccttgag 611
>gb|AY106149.1| Zea mays PCO102434 mRNA sequence Length = 1081 Score = 206 bits (104), Expect = 4e-50 Identities = 143/156 (91%) Strand = Plus / Minus Query: 257 tctggggatgacgatgtcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccag 316 ||||||||||| |||||||||||||||||||||||||||||| |||||||| | ||| || Sbjct: 787 tctggggatgatgatgtcgccgatgttgttgtgccacgggtcggcgaggtgggaggcgag 728 Query: 317 gttctccagcgggccggtgccggggtacgccgactgctgcacgcagaaccccacgaacgc 376 ||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| || Sbjct: 727 gttctccagcgggccggtgccggggtacgccgactgctggacgcagaagccgacgaaggc 668 Query: 377 cagcatcgccagccgcccgttcttgatctccttgag 412 |||||| || || || |||||||||||||||||||| Sbjct: 667 cagcatggcgaggcggccgttcttgatctccttgag 632
>dbj|AK098864.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A03, full insert sequence Length = 1046 Score = 192 bits (97), Expect = 6e-46 Identities = 142/157 (90%) Strand = Plus / Minus Query: 256 ttctggggatgacgatgtcgccgatgttgttgtgccacgggtccgcgaggtgcgtggcca 315 |||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||| Sbjct: 797 ttctcgggatgatgatgtcgccgatgttgttgtgccacgggtccgagaggtggctggcca 738 Query: 316 ggttctccagcgggccggtgccggggtacgccgactgctgcacgcagaaccccacgaacg 375 |||||||||| ||||||||||| |||||||||||||| || |||||||| ||||| || | Sbjct: 737 ggttctccagtgggccggtgcccgggtacgccgactgttggacgcagaaacccacaaaag 678 Query: 376 ccagcatcgccagccgcccgttcttgatctccttgag 412 ||||||| |||| ||||||||||||||||||||||| Sbjct: 677 ccagcatggccaatcgcccgttcttgatctccttgag 641
>dbj|AK060904.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-E07, full insert sequence Length = 1051 Score = 192 bits (97), Expect = 6e-46 Identities = 142/157 (90%) Strand = Plus / Minus Query: 256 ttctggggatgacgatgtcgccgatgttgttgtgccacgggtccgcgaggtgcgtggcca 315 |||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||| Sbjct: 802 ttctcgggatgatgatgtcgccgatgttgttgtgccacgggtccgagaggtggctggcca 743 Query: 316 ggttctccagcgggccggtgccggggtacgccgactgctgcacgcagaaccccacgaacg 375 |||||||||| ||||||||||| |||||||||||||| || |||||||| ||||| || | Sbjct: 742 ggttctccagtgggccggtgcccgggtacgccgactgttggacgcagaaacccacaaaag 683 Query: 376 ccagcatcgccagccgcccgttcttgatctccttgag 412 ||||||| |||| ||||||||||||||||||||||| Sbjct: 682 ccagcatggccaatcgcccgttcttgatctccttgag 646
>dbj|AK060800.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F04, full insert sequence Length = 1958 Score = 192 bits (97), Expect = 6e-46 Identities = 142/157 (90%) Strand = Plus / Minus Query: 256 ttctggggatgacgatgtcgccgatgttgttgtgccacgggtccgcgaggtgcgtggcca 315 |||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||| Sbjct: 799 ttctcgggatgatgatgtcgccgatgttgttgtgccacgggtccgagaggtggctggcca 740 Query: 316 ggttctccagcgggccggtgccggggtacgccgactgctgcacgcagaaccccacgaacg 375 |||||||||| ||||||||||| |||||||||||||| || |||||||| ||||| || | Sbjct: 739 ggttctccagtgggccggtgcccgggtacgccgactgttggacgcagaaacccacaaaag 680 Query: 376 ccagcatcgccagccgcccgttcttgatctccttgag 412 ||||||| |||| ||||||||||||||||||||||| Sbjct: 679 ccagcatggccaatcgcccgttcttgatctccttgag 643
>gb|AF094776.1|AF094776 Oryza sativa chlorophyll a/b-binding protein precursor (Cab26) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1050 Score = 192 bits (97), Expect = 6e-46 Identities = 142/157 (90%) Strand = Plus / Minus Query: 256 ttctggggatgacgatgtcgccgatgttgttgtgccacgggtccgcgaggtgcgtggcca 315 |||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||| Sbjct: 782 ttctcgggatgatgatgtcgccgatgttgttgtgccacgggtccgagaggtggctggcca 723 Query: 316 ggttctccagcgggccggtgccggggtacgccgactgctgcacgcagaaccccacgaacg 375 |||||||||| ||||||||||| |||||||||||||| || |||||||| ||||| || | Sbjct: 722 ggttctccagtgggccggtgcccgggtacgccgactgttggacgcagaaacccacaaaag 663 Query: 376 ccagcatcgccagccgcccgttcttgatctccttgag 412 ||||||| |||| ||||||||||||||||||||||| Sbjct: 662 ccagcatggccaatcgcccgttcttgatctccttgag 626
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 159 bits (80), Expect = 9e-36 Identities = 119/132 (90%) Strand = Plus / Minus Query: 256 ttctggggatgacgatgtcgccgatgttgttgtgccacgggtccgcgaggtgcgtggcca 315 |||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||| Sbjct: 12296597 ttctcgggatgatgatgtcgccgatgttgttgtgccacgggtccgagaggtggctggcca 12296538 Query: 316 ggttctccagcgggccggtgccggggtacgccgactgctgcacgcagaaccccacgaacg 375 |||||||||| ||||||||||| |||||||||||||| || |||||||| ||||| || | Sbjct: 12296537 ggttctccagtgggccggtgcccgggtacgccgactgttggacgcagaaacccacaaaag 12296478 Query: 376 ccagcatcgcca 387 ||||||| |||| Sbjct: 12296477 ccagcatggcca 12296466 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ccgttcttgatctccttgag 412 |||||||||||||||||||| Sbjct: 12296350 ccgttcttgatctccttgag 12296331
>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0578B12 Length = 151192 Score = 159 bits (80), Expect = 9e-36 Identities = 119/132 (90%) Strand = Plus / Minus Query: 256 ttctggggatgacgatgtcgccgatgttgttgtgccacgggtccgcgaggtgcgtggcca 315 |||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||| Sbjct: 13057 ttctcgggatgatgatgtcgccgatgttgttgtgccacgggtccgagaggtggctggcca 12998 Query: 316 ggttctccagcgggccggtgccggggtacgccgactgctgcacgcagaaccccacgaacg 375 |||||||||| ||||||||||| |||||||||||||| || |||||||| ||||| || | Sbjct: 12997 ggttctccagtgggccggtgcccgggtacgccgactgttggacgcagaaacccacaaaag 12938 Query: 376 ccagcatcgcca 387 ||||||| |||| Sbjct: 12937 ccagcatggcca 12926 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ccgttcttgatctccttgag 412 |||||||||||||||||||| Sbjct: 12810 ccgttcttgatctccttgag 12791
>ref|NM_180375.1| Arabidopsis thaliana LHCA1 AT3G54890 (LHCA1) transcript variant AT3G54890.3 mRNA, complete cds Length = 929 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 705 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 646 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 645 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 586 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 585 ccgttcttgatctc 572
>ref|NM_180374.1| Arabidopsis thaliana LHCA1 AT3G54890 (LHCA1) transcript variant AT3G54890.2 mRNA, complete cds Length = 894 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 670 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 611 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 610 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 551 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 550 ccgttcttgatctc 537
>ref|NM_115346.2| Arabidopsis thaliana LHCA1; chlorophyll binding AT3G54890 (LHCA1) transcript variant AT3G54890.1 mRNA, complete cds Length = 996 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 772 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 713 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 712 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 653 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 652 ccgttcttgatctc 639
>gb|BT000852.1| Arabidopsis thaliana At3g54890/F28P10_130 mRNA, complete cds Length = 726 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 704 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 645 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 644 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 585 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 584 ccgttcttgatctc 571
>gb|AF339688.1| Arabidopsis thaliana putative chlorophyll a/b-binding protein (At3g54890) mRNA, complete cds Length = 770 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 704 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 645 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 644 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 585 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 584 ccgttcttgatctc 571
>gb|AF326866.1| Arabidopsis thaliana putative chlorophyll a/b-binding protein (At3g54890) mRNA, complete cds Length = 939 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 770 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 711 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 710 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 651 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 650 ccgttcttgatctc 637
>gb|AY094437.1| Arabidopsis thaliana AT3g54890/F28P10_130 mRNA, complete cds Length = 945 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 770 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 711 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 710 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 651 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 650 ccgttcttgatctc 637
>gb|AF361847.1| Arabidopsis thaliana AT3g54890/F28P10_130 mRNA, complete cds Length = 923 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 770 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 711 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 710 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 651 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 650 ccgttcttgatctc 637
>gb|AY070473.1| Arabidopsis thaliana AT3g54890/F28P10_130 mRNA, complete cds Length = 890 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 770 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 711 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 710 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 651 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 650 ccgttcttgatctc 637
>gb|AF325016.2|AF325016 Arabidopsis thaliana AT3g54890 (AT3g54890/F28P10_130) mRNA, complete cds Length = 923 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 770 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 711 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 710 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 651 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 650 ccgttcttgatctc 637
>gb|AF324692.2|AF324692 Arabidopsis thaliana AT3g54890 (AT3g54890/F28P10_130) mRNA, complete cds Length = 921 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 768 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 709 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 708 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 649 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 648 ccgttcttgatctc 635
>emb|BX823678.1|CNS0A7B9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS66ZA09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 902 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 750 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 691 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 690 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 631 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 630 ccgttcttgatctc 617
>emb|BX823620.1|CNS0A7BA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS58ZA07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 860 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 756 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 697 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 696 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 637 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 636 ccgttcttgatctc 623
>emb|BX822994.1|CNS0A7CC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB7ZA05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 460 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 282 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 223 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 222 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 163 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 162 ccgttcttgatctc 149
>emb|BX822507.1|CNS0A73P Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB43ZB11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 885 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 752 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 693 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 692 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 633 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 632 ccgttcttgatctc 619
>emb|BX825357.1|CNS0A6D9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL31ZG05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 851 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 747 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 688 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 687 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 628 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 627 ccgttcttgatctc 614
>emb|X56062.1|ATCABI A.thaliana Cab mRNA for photossystem I chlorophyll A/B-binding protein Length = 933 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 811 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 752 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 751 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 692 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 691 ccgttcttgatctc 678
>emb|BX822215.1|CNS0A753 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB1ZH02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 873 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| ||||||||||| || || ||||| | ||| || |||| |||||||| || || Sbjct: 755 tcgccaatgttgttgtgtcatggatccgccaagtgagttgccaagttctccaatggtcct 696 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 695 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 636 Query: 393 ccgttcttgatctc 406 |||||||||||||| Sbjct: 635 ccgttcttgatctc 622
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 360 cagaaccccacgaacgccagcatcgccagccgcccgttcttgatctccttg 410 |||||||||||||| || ||||| || |||| ||||||||||||||||||| Sbjct: 16234635 cagaaccccacgaaggcgagcatggcgagcctcccgttcttgatctccttg 16234585
>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1344_B01 Length = 170912 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 360 cagaaccccacgaacgccagcatcgccagccgcccgttcttgatctccttg 410 |||||||||||||| || ||||| || |||| ||||||||||||||||||| Sbjct: 51151 cagaaccccacgaaggcgagcatggcgagcctcccgttcttgatctccttg 51101
>dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556H01 Length = 149800 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 360 cagaaccccacgaacgccagcatcgccagccgcccgttcttgatctccttg 410 |||||||||||||| || ||||| || |||| ||||||||||||||||||| Sbjct: 139236 cagaaccccacgaaggcgagcatggcgagcctcccgttcttgatctccttg 139186
>dbj|AK067780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114F21, full insert sequence Length = 919 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 360 cagaaccccacgaacgccagcatcgccagccgcccgttcttgatctccttg 410 |||||||||||||| || ||||| || |||| ||||||||||||||||||| Sbjct: 758 cagaaccccacgaaggcgagcatggcgagcctcccgttcttgatctccttg 708
>emb|AL049655.2|ATF28P10 Arabidopsis thaliana DNA chromosome 3, BAC clone F28P10 Length = 90736 Score = 60.0 bits (30), Expect = 6e-06 Identities = 99/122 (81%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 47551 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 47492 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 47491 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 47432 Query: 393 cc 394 || Sbjct: 47431 cc 47430
>gb|AC172870.1| Brassica rapa subsp. pekinensis clone KBrH004A06, complete sequence Length = 145603 Score = 60.0 bits (30), Expect = 6e-06 Identities = 87/106 (82%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| ||||| |||||||| || ||||| | ||| || ||||||||||||| || || Sbjct: 132199 tcgccaatgtttttgtgccatggatccgccaagtgagtagccaggttctccaatggtcct 132140 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgcca 378 ||||| ||||| ||||| |||||||| ||||| || || ||||||| Sbjct: 132139 gtgcctgggtaggccgattgctgcacacagaatcctacaaacgcca 132094
>gb|M85150.1|ATHCAB6P Arabidopsis thaliana chlorophyll A/B-binding protein gene, complete cds Length = 2904 Score = 60.0 bits (30), Expect = 6e-06 Identities = 99/122 (81%) Strand = Plus / Minus Query: 273 tcgccgatgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccg 332 ||||| |||||||||||||| || ||||| | ||| || |||| |||||||| || || Sbjct: 2409 tcgccaatgttgttgtgccatggatccgccaagtgagttgccaagttctccaatggtcct 2350 Query: 333 gtgccggggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgc 392 || || ||||| |||||||| ||||| ||||| || || ||||||| || ||| |||||| Sbjct: 2349 gtccccgggtaagccgactgttgcacacagaatcctacaaacgccaacagcgcaagccgc 2290 Query: 393 cc 394 || Sbjct: 2289 cc 2288
>ref|XM_482572.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1070 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 698 gaaccccaagaacgccagcatcgccagcctcccgtt 663
>ref|XM_507585.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1138 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 702 gaaccccaagaacgccagcatcgccagcctcccgtt 667
>ref|XM_507584.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1138 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 702 gaaccccaagaacgccagcatcgccagcctcccgtt 667
>ref|XM_507583.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1178 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 699 gaaccccaagaacgccagcatcgccagcctcccgtt 664
>ref|XM_507582.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1188 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 698 gaaccccaagaacgccagcatcgccagcctcccgtt 663
>ref|XM_507239.2| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1191 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 701 gaaccccaagaacgccagcatcgccagcctcccgtt 666
>gb|AY445626.2| Oryza sativa (japonica cultivar-group) chlorophyll a/b binding protein presusor mRNA, complete cds; nuclear gene for chloroplast product Length = 1128 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 678 gaaccccaagaacgccagcatcgccagcctcccgtt 643
>dbj|AB122114.1| Chlamydomonas reinhardtii LhcI-1 gene for light-harvesting chlorophyll-a/b protein of photosystem I, complete cds Length = 2649 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 370 cgaacgccagcatcgccagccgcccgttcttgatctcctt 409 ||||||||||||| ||||| || ||||||||||||||||| Sbjct: 2328 cgaacgccagcatggccagacggccgttcttgatctcctt 2289
>dbj|AK104499.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E04, full insert sequence Length = 1140 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 702 gaaccccaagaacgccagcatcgccagcctcccgtt 667
>dbj|AK104416.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G03, full insert sequence Length = 1177 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 699 gaaccccaagaacgccagcatcgccagcctcccgtt 664
>dbj|AK103921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B07, full insert sequence Length = 1193 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 703 gaaccccaagaacgccagcatcgccagcctcccgtt 668
>dbj|AK067809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121A03, full insert sequence Length = 1190 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 700 gaaccccaagaacgccagcatcgccagcctcccgtt 665
>dbj|AK067712.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120A20, full insert sequence Length = 1138 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 702 gaaccccaagaacgccagcatcgccagcctcccgtt 667
>dbj|AK060222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F08, full insert sequence Length = 1078 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 707 gaaccccaagaacgccagcatcgccagcctcccgtt 672
>gb|AF094775.1|AF094775 Oryza sativa chlorophyll a/b-binding protein presursor (Cab27) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1162 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||||||||||| |||||| Sbjct: 665 gaaccccaagaacgccagcatcgccagcctcccgtt 630
>gb|AY105333.1| Zea mays PCO095488 mRNA sequence Length = 794 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 360 cagaaccccacgaacgccagcatcgccagccgcccgttcttgatctccttg 410 ||||| || ||||| || ||||| || |||||||||||||||||||||||| Sbjct: 364 cagaagccgacgaaggcgagcatggcgagccgcccgttcttgatctccttg 314
>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11, complete sequence Length = 135993 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||||||||||||||||||||||||| Sbjct: 40115 gccagccgcccgttcttgatctcctt 40090
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||||||||||||||||||||||||| Sbjct: 7581029 gccagccgcccgttcttgatctcctt 7581004
>dbj|AB211497.1| Lemna paucicostata LpCAB1 mRNA for CAB homologue1, partial cds Length = 695 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 380 catcgccagccgcccgttcttgatctcctt 409 |||||||||||| ||||||||||||||||| Sbjct: 574 catcgccagccgtccgttcttgatctcctt 545
>emb|AJ309102.1|PPI309102 Pinus pinaster partial mRNA for putative chlorophyll A-B binding protein type I Length = 684 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 380 catcgccagccgcccgttcttgatctcctt 409 ||||||||||||||||||||| |||||||| Sbjct: 455 catcgccagccgcccgttcttaatctcctt 426
>dbj|AK104824.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F05, full insert sequence Length = 1157 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||||||||||||||||||||||||| Sbjct: 794 gccagccgcccgttcttgatctcctt 769
>dbj|AK098872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B10, full insert sequence Length = 1101 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||||||||||||||||||||||||| Sbjct: 784 gccagccgcccgttcttgatctcctt 759
>dbj|AK061295.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D05, full insert sequence Length = 1186 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||||||||||||||||||||||||| Sbjct: 795 gccagccgcccgttcttgatctcctt 770
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||||||||||||||||||||||||| Sbjct: 7651116 gccagccgcccgttcttgatctcctt 7651091
>gb|M12152.1|LGIAB19A Lemna gibba chlorophyll a/b apoprotein gene, complete cds Length = 1913 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||||||||||||||||||||||||| Sbjct: 1395 gccagccgcccgttcttgatctcctt 1370
>dbj|D85512.1| Oryza sativa (japonica cultivar-group) CP26 mRNA, partial sequence Length = 556 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||||||||||||||||||||||||| Sbjct: 249 gccagccgcccgttcttgatctcctt 224
>ref|XM_482573.1| Oryza sativa (japonica cultivar-group), mRNA Length = 576 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 362 gaaccccacgaacgccagcatcgccagcc 390 |||||||| |||||||||||||||||||| Sbjct: 84 gaaccccaagaacgccagcatcgccagcc 112
>ref|XM_507384.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1062 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 697 agcatggcgagccgcccgttcttgatctccttg 665
>ref|XM_507383.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1059 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 698 agcatggcgagccgcccgttcttgatctccttg 666
>ref|XM_507382.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1058 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 700 agcatggcgagccgcccgttcttgatctccttg 668
>ref|XM_478841.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1047 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 703 agcatggcgagccgcccgttcttgatctccttg 671
>ref|XM_507381.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1061 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 703 agcatggcgagccgcccgttcttgatctccttg 671
>ref|XM_507380.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1065 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 704 agcatggcgagccgcccgttcttgatctccttg 672
>ref|XM_507379.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1069 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 704 agcatggcgagccgcccgttcttgatctccttg 672
>ref|XM_506426.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1068 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 707 agcatggcgagccgcccgttcttgatctccttg 675
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 362 gaaccccacgaacgccagcatcgccagcc 390 |||||||| |||||||||||||||||||| Sbjct: 21164527 gaaccccaagaacgccagcatcgccagcc 21164555
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 23305211 agcatggcgagccgcccgttcttgatctccttg 23305179 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 4178567 cacgaaccccaccatcgccagccgcccgtt 4178538 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 4176126 cacgaaccccaccatcgccagccgcccgtt 4176097
>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1065_B06 Length = 113170 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 60469 agcatggcgagccgcccgttcttgatctccttg 60437
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 362 gaaccccacgaacgccagcatcgccagcc 390 |||||||| |||||||||||||||||||| Sbjct: 135737 gaaccccaagaacgccagcatcgccagcc 135765
>dbj|AK119176.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-F08, full insert sequence Length = 1088 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 718 agcatggcgagccgcccgttcttgatctccttg 686
>dbj|AK104651.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B06, full insert sequence Length = 1069 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 704 agcatggcgagccgcccgttcttgatctccttg 672
>dbj|AK104608.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C01, full insert sequence Length = 1065 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 704 agcatggcgagccgcccgttcttgatctccttg 672
>dbj|AK104283.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-H09, full insert sequence Length = 1080 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 734 agcatggcgagccgcccgttcttgatctccttg 702
>dbj|AK104177.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D02, full insert sequence Length = 1058 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 700 agcatggcgagccgcccgttcttgatctccttg 668
>dbj|AK104127.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E10, full insert sequence Length = 1061 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 703 agcatggcgagccgcccgttcttgatctccttg 671
>dbj|AK104016.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-G05, full insert sequence Length = 1062 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 697 agcatggcgagccgcccgttcttgatctccttg 665
>dbj|AK103966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-H03, full insert sequence Length = 1059 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 698 agcatggcgagccgcccgttcttgatctccttg 666
>dbj|AK070051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040A06, full insert sequence Length = 1646 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 994 agcatggcgagccgcccgttcttgatctccttg 962
>dbj|AK060987.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C01, full insert sequence Length = 1068 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| || |||||||||||||||||||||||| Sbjct: 707 agcatggcgagccgcccgttcttgatctccttg 675
>emb|AM050696.1| Rhodomonas sp. CS24 lhcc5 gene for light-harvesting complex protein Lhcc5 precursor, exons 1-3 Length = 4979 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 380 catcgccagccgcccgttcttgatctccttgag 412 |||||| || ||||||||||||||||||||||| Sbjct: 2424 catcgcgaggcgcccgttcttgatctccttgag 2392
>gb|U22329.1|VCU22329 Volvox carteri light harvesting complex a mRNA, complete cds Length = 1085 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 370 cgaacgccagcatcgccagccgcccgttcttgatctccttg 410 |||| |||||||| ||||| || |||||||||||||||||| Sbjct: 702 cgaaggccagcatggccaggcggccgttcttgatctccttg 662
>gb|AY786530.1| Haematococcus pluvialis chloroplast major light-harvesting complex II protein m9 mRNA, partial cds; nuclear gene for chloroplast product Length = 577 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctccttga 411 |||| ||||||||||||||||||||||| Sbjct: 324 gccaaccgcccgttcttgatctccttga 297
>emb|X12861.1|EGLHCI38 Euglena gracilis mRNA fragment for LHCI protein LH38 Length = 1590 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Minus Query: 380 catcgccagccgcccgttcttgatctcc 407 |||||||||||| ||||||||||||||| Sbjct: 1521 catcgccagccggccgttcttgatctcc 1494
>ref|NM_188763.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 342 cacgaaccccaccatcgccagccgcccgtt 313
>ref|XM_468708.1| Oryza sativa (japonica cultivar-group), mRNA Length = 669 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 321 cacgaaccccaccatcgccagccgcccgtt 292
>ref|XM_476845.1| Oryza sativa (japonica cultivar-group), mRNA Length = 564 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 297 cacgaaccccaccatcgccagccgcccgtt 268
>ref|XM_476844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 603 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 336 cacgaaccccaccatcgccagccgcccgtt 307
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 17148450 cacgaaccccaccatcgccagccgcccgtt 17148479
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence Length = 182756 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 25554 cacgaaccccaccatcgccagccgcccgtt 25525
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete sequence Length = 153247 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 39843 cacgaaccccaccatcgccagccgcccgtt 39872
>emb|AJ313013.1|PCO313013 Pinus contorta cab gene for chlorophyll a/b binding protein Length = 1197 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||| ||||||||||||||||||||| Sbjct: 749 gccaaccgcccgttcttgatctcctt 724
>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10 Length = 150379 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 58092 cacgaaccccaccatcgccagccgcccgtt 58063
>gb|AY617086.1| Pinus roxburghii chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||| ||||||||||||||||||||| Sbjct: 679 gccaaccgcccgttcttgatctcctt 654
>gb|AY617085.1| Pinus merkusii chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||| ||||||||||||||||||||| Sbjct: 679 gccaaccgcccgttcttgatctcctt 654
>gb|AY617084.1| Pinus contorta chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||| ||||||||||||||||||||| Sbjct: 679 gccaaccgcccgttcttgatctcctt 654
>gb|AY617083.1| Pinus radiata chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||| ||||||||||||||||||||| Sbjct: 679 gccaaccgcccgttcttgatctcctt 654
>gb|AY617082.1| Pinus ponderosa chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||| ||||||||||||||||||||| Sbjct: 679 gccaaccgcccgttcttgatctcctt 654
>gb|AY617081.1| Pinus echinata chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 762 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||| ||||||||||||||||||||| Sbjct: 679 gccaaccgcccgttcttgatctcctt 654
>gb|S73603.1| Pinus thunbergii chlorophyll a/b-binding protein (LHCPII) mRNA, complete cds Length = 998 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||| ||||||||||||||||||||| Sbjct: 725 gccaaccgcccgttcttgatctcctt 700
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 17142019 cacgaaccccaccatcgccagccgcccgtt 17142048
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 9470745 cacgaaccccaccatcgccagccgcccgtt 9470774
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 8061441 cacgaaccccaccatcgccagccgcccgtt 8061412
>gb|AF195794.1|AF195794 Chlamydomonas reinhardtii chlorophyll A-B binding protein of LHCI (CAB6A) mRNA, complete cds Length = 1136 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 ||||| |||||||||||||||||||| Sbjct: 592 gccaggcgcccgttcttgatctcctt 567
>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0006C08 Length = 151987 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 84306 cacgaaccccaccatcgccagccgcccgtt 84335
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 62189 cacgaaccccaccatcgccagccgcccgtt 62160 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 59748 cacgaaccccaccatcgccagccgcccgtt 59719
>emb|X63052.1|HVCP29 Hordeum vulgare gene for CP29 precursor for core chlorophyll a/b binding (CAB) protein of photosystem II (PSII) Length = 2689 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||||||| ||||||||||||||||| Sbjct: 2098 gccagccgtccgttcttgatctcctt 2073
>emb|Z49749.1|PMLHCABBP P.menziesii mRNA for light-harvesting chlorophyll a/b binding protein of photosystem II Length = 772 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 380 catcgccagccgcccgttcttgatctcctt 409 ||||||||||||||||||||| | |||||| Sbjct: 572 catcgccagccgcccgttctttagctcctt 543
>emb|X67714.1|PCCABA P.contorta cab gene for chlorophyll a/b binding protein Length = 2574 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||| ||||||||||||||||||||| Sbjct: 1827 gccaaccgcccgttcttgatctcctt 1802
>emb|X14506.1|PSCABIIB Pinus sylvestris cab II/1B mRNA for chlorophyll a/b-binding protein Length = 1006 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||| ||||||||||||||||||||| Sbjct: 734 gccaaccgcccgttcttgatctcctt 709
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 44.1 bits (22), Expect = 0.35 Identities = 31/34 (91%) Strand = Plus / Plus Query: 195 tgcgctccggctcctcgatctcctctcagcccgg 228 ||||||||| ||| ||||||||||| |||||||| Sbjct: 3125637 tgcgctccgcctcgtcgatctcctcacagcccgg 3125670 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 aggttctccagcgggccggt 334 |||||||||||||||||||| Sbjct: 2368843 aggttctccagcgggccggt 2368824
>dbj|AK062972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E06, full insert sequence Length = 942 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 491 cacgaaccccaccatcgccagccgcccgtt 462
>gb|AF017357.1|AF017357 Oryza sativa low molecular early light-inducible protein mRNA, complete cds Length = 883 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 465 cacgaaccccaccatcgccagccgcccgtt 436
>gb|AF017356.1|AF017356 Oryza sativa low molecular early light-inducible protein mRNA, complete cds Length = 818 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 cacgaacgccagcatcgccagccgcccgtt 397 ||||||| ||| |||||||||||||||||| Sbjct: 401 cacgaaccccaccatcgccagccgcccgtt 372
>gb|AF010321.1|AF010321 Oryza sativa photosystem I antenna protein (Lhca) mRNA, complete cds Length = 1066 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 389 ccgcccgttcttgatctccttg 410 |||||||||||||||||||||| Sbjct: 666 ccgcccgttcttgatctccttg 645
>gb|U51633.1|PPU51633 Pinus palustris type 1 light-harvesting chlorophyll a/b-binding polypeptide (Lhcb1) mRNA, partial cds Length = 414 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||| ||||||||||||||||||||| Sbjct: 150 gccaaccgcccgttcttgatctcctt 125
>gb|U51632.1|PPU51632 Pinus palustris type 2 light-harvesting chlorophyll a/b-binding polypeptide (Lhcb2) mRNA, partial cds Length = 873 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 ||||||||||||||||| |||||||| Sbjct: 602 gccagccgcccgttctttatctcctt 577
>gb|U23189.1|ZMU23189 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-2) mRNA, complete cds Length = 1073 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 380 catcgccagccgcccgttcttgatctcctt 409 |||||| ||||| ||||||||||||||||| Sbjct: 739 catcgcgagccggccgttcttgatctcctt 710
>emb|X06602.1|EGLHCPAB Euglena gracilis mRNA for light harvesting chlorophyll a/b protein Length = 681 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctcctt 409 |||||||| ||||||||||||||||| Sbjct: 232 gccagccggccgttcttgatctcctt 207
>gb|AC164646.3| Mus musculus BAC clone RP24-262I1 from chromosome 3, complete sequence Length = 175326 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 agaaacatgaatgaaaaccat 195 ||||||||||||||||||||| Sbjct: 96766 agaaacatgaatgaaaaccat 96786
>gb|DQ160108.1| Taraxacum officinale TO75-2 (To75-2) mRNA, partial cds Length = 218 Score = 42.1 bits (21), Expect = 1.4 Identities = 105/133 (78%) Strand = Plus / Minus Query: 279 atgttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccggtgccg 338 |||||||||||||| ||||| || | || || |||| |||||||| || ||||| || Sbjct: 166 atgttgttgtgccatgggtcagccaaatgagttgccaagttctccaaaggtccggtacca 107 Query: 339 gggtacgccgactgctgcacgcagaaccccacgaacgccagcatcgccagccgcccgttc 398 ||||||||||| || ||||| || || ||||| || |||| || || | || |||||| Sbjct: 106 gggtacgccgattgttgcacacaaaatcccacaaaagccaacaaagctaaacgtccgttc 47 Query: 399 ttgatctccttga 411 |||||||| |||| Sbjct: 46 ttgatctctttga 34
>gb|AF241524.1|AF241524 Asarina barclaiana chlorophyll a/b-binding protein type I mRNA, partial cds Length = 507 Score = 42.1 bits (21), Expect = 1.4 Identities = 72/89 (80%) Strand = Plus / Minus Query: 282 ttgttgtgccacgggtccgcgaggtgcgtggccaggttctccagcgggccggtgccgggg 341 ||||| ||||| |||||||| | ||| || |||| |||||||| || || || || ||| Sbjct: 506 ttgttatgccaggggtccgccaagtgagttgccaagttctccaatggacccgtacccggg 447 Query: 342 tacgccgactgctgcacgcagaaccccac 370 || ||||| || ||||||||||| ||||| Sbjct: 446 tatgccgattgttgcacgcagaatcccac 418
>emb|X84308.1|HVLHCA2 H.vulgare mRNA for photosysteme I antenna protein Length = 1050 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 378 agcatcgccagccgcccgttcttgatctccttg 410 ||||| ||||| || |||||||||||||||||| Sbjct: 727 agcatggccaggcggccgttcttgatctccttg 695
>emb|AL833798.8| Mouse DNA sequence from clone RP23-130L21 on chromosome 4, complete sequence Length = 214799 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 ctcagaaacatgaatgaaaac 192 ||||||||||||||||||||| Sbjct: 24328 ctcagaaacatgaatgaaaac 24308
>ref|NM_122728.1| Arabidopsis thaliana chlorophyll binding AT5G28450 mRNA, complete cds Length = 522 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 375 gccagcatcgccagccgcccgttcttgatctccttg 410 |||| |||||||| || |||||||||||||||||| Sbjct: 404 gccaacatcgccaaccttccgttcttgatctccttg 369
>ref|NM_103597.2| Arabidopsis thaliana LHCA5 AT1G45474 (LHCA5) transcript variant AT1G45474.1 mRNA, complete cds Length = 888 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 374 cgccagcatcgccagccgcccgttcttgatctcctt 409 ||||| |||||| || || ||||||||||||||||| Sbjct: 675 cgccatcatcgctagacgaccgttcttgatctcctt 640
>ref|NM_179447.1| Arabidopsis thaliana LHCA5 AT1G45474 (LHCA5) transcript variant AT1G45474.2 mRNA, complete cds Length = 928 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 374 cgccagcatcgccagccgcccgttcttgatctcctt 409 ||||| |||||| || || ||||||||||||||||| Sbjct: 699 cgccatcatcgctagacgaccgttcttgatctcctt 664
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gtgcgcgcgcagagccagcg 144 |||||||||||||||||||| Sbjct: 197205 gtgcgcgcgcagagccagcg 197186
>gb|AY954736.1| Ostreococcus tauri chloroplast light-harvesting complex I protein precursor Lhca5 gene, complete cds; nuclear gene for chloroplast product Length = 957 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ccgttcttgatctccttgag 412 |||||||||||||||||||| Sbjct: 806 ccgttcttgatctccttgag 787
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gggtccgcgaggtgcgtggc 313 |||||||||||||||||||| Sbjct: 778859 gggtccgcgaggtgcgtggc 778840
>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16 Length = 349635 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 cacgcagaaccccacgaacgccagcatc 383 ||||| |||| ||||||||||||||||| Sbjct: 185790 cacgccgaacaccacgaacgccagcatc 185817
>emb|AL731850.7| Zebrafish DNA sequence from clone BUSM1-57I23 in linkage group 9 Contains a novel gene for a protein similar to Oncorhynchus mykiss VHSV-induced protein and a CpG island, complete sequence Length = 57981 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 gactgctgcacgcagaaccc 367 |||||||||||||||||||| Sbjct: 23328 gactgctgcacgcagaaccc 23309
>emb|BX510646.5| Zebrafish DNA sequence from clone CH211-221B16 in linkage group 9, complete sequence Length = 200321 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gactgctgcacgcagaaccc 367 |||||||||||||||||||| Sbjct: 134855 gactgctgcacgcagaaccc 134874
>gb|DQ018375.1| Pinus gerardiana chloroplast putative light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 760 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cgcccgttcttgatctcctt 409 |||||||||||||||||||| Sbjct: 673 cgcccgttcttgatctcctt 654
>gb|AY617095.1| Pinus nelsonii chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cgcccgttcttgatctcctt 409 |||||||||||||||||||| Sbjct: 673 cgcccgttcttgatctcctt 654
>gb|AY617094.1| Pinus longaeva chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 759 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cgcccgttcttgatctcctt 409 |||||||||||||||||||| Sbjct: 662 cgcccgttcttgatctcctt 643
>gb|AY617093.1| Pinus remota chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cgcccgttcttgatctcctt 409 |||||||||||||||||||| Sbjct: 673 cgcccgttcttgatctcctt 654
>gb|AY617092.1| Pinus monophylla chloroplast light harvesting chlorophyll a/b binding protein (ifg1934) gene, partial cds; nuclear gene for chloroplast product Length = 770 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cgcccgttcttgatctcctt 409 |||||||||||||||||||| Sbjct: 673 cgcccgttcttgatctcctt 654
>gb|AY090263.1| Arabidopsis thaliana At1g45474/F2G19.4 mRNA, complete cds Length = 771 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 374 cgccagcatcgccagccgcccgttcttgatctcctt 409 ||||| |||||| || || ||||||||||||||||| Sbjct: 648 cgccatcatcgctagacgaccgttcttgatctcctt 613
>gb|AY062097.1| Arabidopsis thaliana At1g45474/F2G19.4 mRNA, complete cds Length = 866 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 374 cgccagcatcgccagccgcccgttcttgatctcctt 409 ||||| |||||| || || ||||||||||||||||| Sbjct: 653 cgccatcatcgctagacgaccgttcttgatctcctt 618
>dbj|AK221694.1| Arabidopsis thaliana mRNA for light-harvesting complex protein, complete cds, clone: RAFL15-25-F20 Length = 896 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 374 cgccagcatcgccagccgcccgttcttgatctcctt 409 ||||| |||||| || || ||||||||||||||||| Sbjct: 677 cgccatcatcgctagacgaccgttcttgatctcctt 642
>gb|S68729.1| LHC Ib-20=light-harvesting complex I [Hordeum vulgare=barley, Prato, mRNA Chloroplast, 939 nt] Length = 939 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||| ||||| | |||||| Sbjct: 591 gaaccccaggaacgccagcatggccagtctcccgtt 556
>gb|AY088144.1| Arabidopsis thaliana clone 41745 mRNA, complete sequence Length = 884 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 374 cgccagcatcgccagccgcccgttcttgatctcctt 409 ||||| |||||| || || ||||||||||||||||| Sbjct: 676 cgccatcatcgctagacgaccgttcttgatctcctt 641
>gb|AF134121.1| Arabidopsis thaliana Lhca5 protein (Lhca5) mRNA, complete cds Length = 955 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 374 cgccagcatcgccagccgcccgttcttgatctcctt 409 ||||| |||||| || || ||||||||||||||||| Sbjct: 710 cgccatcatcgctagacgaccgttcttgatctcctt 675
>gb|AC073415.6| Homo sapiens BAC clone RP11-84C2 from 2, complete sequence Length = 214668 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 gaaacatgaatgaaaaccat 195 |||||||||||||||||||| Sbjct: 142115 gaaacatgaatgaaaaccat 142096
>gb|AF287276.1|AF287276 Hordeum vulgare chlorophyll a/b-binding protein precursor (Lhca4) mRNA, partial cds; nuclear gene for chloroplast product Length = 687 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 362 gaaccccacgaacgccagcatcgccagccgcccgtt 397 |||||||| |||||||||||| ||||| | |||||| Sbjct: 582 gaaccccaggaacgccagcatggccagtctcccgtt 547
>gb|AF262038.1|F21B23 Arabidopsis thaliana BAC F21B23 Length = 71284 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 375 gccagcatcgccagccgcccgttcttgatctccttg 410 |||| |||||||| || |||||||||||||||||| Sbjct: 55311 gccaacatcgccaaccttccgttcttgatctccttg 55346
>dbj|AB122115.1| Chlamydomonas reinhardtii LhcI-2 gene for light-harvesting chlorophyll-a/b protein of photosystem I (Type III), complete cds Length = 2389 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ccgttcttgatctccttgag 412 |||||||||||||||||||| Sbjct: 1936 ccgttcttgatctccttgag 1917
>dbj|AB115772.1| Physcomitrella patens subsp. patens PpLhcb2 gene for light-harvesting chlorophyll a/b-binding protein 2, complete cds Length = 3125 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cgcccgttcttgatctcctt 409 |||||||||||||||||||| Sbjct: 2879 cgcccgttcttgatctcctt 2860
>dbj|AB050007.2| Chlamydomonas reinhardtii lhcb5 mRNA for CP26, complete cds Length = 952 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctccttga 411 ||||| || ||||||||||||||||||| Sbjct: 771 gccaggcggccgttcttgatctccttga 744
>emb|X12735.1|HVCAB2 Barley Cab-2 gene for major light-harvesting chlorophyll a/b- binding protein ( LHCP ) Length = 1030 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctccttga 411 ||||| || ||||||||||||||||||| Sbjct: 836 gccaggcgtccgttcttgatctccttga 809
>gb|AY104614.1| Zea mays PCO084486 mRNA sequence Length = 1214 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ccgttcttgatctccttgag 412 |||||||||||||||||||| Sbjct: 845 ccgttcttgatctccttgag 826
>gb|AF017998.1|AF017998 Tetraselmis sp. RG-15 chlorophyll a/b binding protein (LHCPII) gene, complete cds Length = 2095 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cgcccgttcttgatctcctt 409 |||||||||||||||||||| Sbjct: 1601 cgcccgttcttgatctcctt 1582
>dbj|AP006865.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT37H21, TM1032, complete sequence Length = 95067 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gatgacgatgtcgccgatgt 282 |||||||||||||||||||| Sbjct: 73695 gatgacgatgtcgccgatgt 73714
>gb|M60049.1|DUNCAB D.tertiolecta 28.5-kDa LHCII apoprotein mRNA, complete cds Length = 1041 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctccttga 411 ||||| || ||||||||||||||||||| Sbjct: 668 gccaggcggccgttcttgatctccttga 641
>gb|M23531.1|DUNCBP D.salina major chlorophyll binding protein mRNA, complete cds Length = 1240 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 384 gccagccgcccgttcttgatctccttga 411 ||||| || ||||||||||||||||||| Sbjct: 856 gccaggcggccgttcttgatctccttga 829 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,879,287 Number of Sequences: 3902068 Number of extensions: 2879287 Number of successful extensions: 50469 Number of sequences better than 10.0: 159 Number of HSP's better than 10.0 without gapping: 160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49862 Number of HSP's gapped (non-prelim): 604 length of query: 412 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 390 effective length of database: 17,147,199,772 effective search space: 6687407911080 effective search space used: 6687407911080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
