ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SCRR_KLEPN (P37076) Sucrose operon repressor (Scr operon regulat... 29 2.6
2MRP4_ARATH (Q7DM58) Multidrug resistance-associated protein 4 (E... 27 9.9
3RUSC1_MOUSE (Q8BG26) RUN and SH3 domain-containing protein 1 27 9.9
4RUSC1_HUMAN (Q9BVN2) RUN and SH3 domain-containing protein 1 (Ne... 27 9.9

>SCRR_KLEPN (P37076) Sucrose operon repressor (Scr operon regulatory protein)|
          Length = 334

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +3

Query: 111 VTGKGK*LNYEQFRRVVLCACARTRHFMASPHAACRAMHAHRQHCTIG 254
           + G+GK L   Q  R  + A AR +H+  S HA  R++  +R H TIG
Sbjct: 26  LNGRGKELRVAQETRERVLAIAREQHYQPSIHA--RSLRDNRSH-TIG 70



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>MRP4_ARATH (Q7DM58) Multidrug resistance-associated protein 4 (EC 3.6.3.44)|
           (Glutathione S-conjugate transporting ATPase 4)
           (ATP-energized glutathione S-conjugate pump 4)
          Length = 1516

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -3

Query: 133 SYFPFPVTVWCILLSIQGISG 71
           S+F FP+T + ++ S++GI+G
Sbjct: 205 SFFSFPLTAFLLIASVRGITG 225



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>RUSC1_MOUSE (Q8BG26) RUN and SH3 domain-containing protein 1|
          Length = 893

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = +3

Query: 192 MASPHAA--CRAMHAHRQHCTIGSYATHAVAMATG---TPPP 302
           M SP  A  C   H H QH ++G + +    +  G   TPPP
Sbjct: 1   MLSPQRALLCNLNHIHLQHVSLGLHLSRRPELREGPLSTPPP 42



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>RUSC1_HUMAN (Q9BVN2) RUN and SH3 domain-containing protein 1 (New molecule|
           containing SH3 at the carboxy-terminus) (Nesca)
          Length = 902

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = +3

Query: 192 MASPHAA--CRAMHAHRQHCTIGSYATHAVAMATG---TPPP 302
           M SP  A  C   H H QH ++G + +    +  G   TPPP
Sbjct: 1   MLSPQRALLCNLNHIHLQHVSLGLHLSRRPELQEGSLSTPPP 42


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,208,927
Number of Sequences: 219361
Number of extensions: 731350
Number of successful extensions: 1889
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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