ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LBD40_ARATH (Q9ZW96) LOB domain protein 40 28 5.0
2FZD1_HUMAN (Q9UP38) Frizzled 1 precursor (Frizzled-1) (Fz-1) (hF... 28 6.5
3CUL7_HUMAN (Q14999) Cullin-7 (CUL-7) 28 8.5
4CUL7_PONPY (Q5RCJ3) Cullin-7 (CUL-7) 28 8.5
5MUDD_CHLPN (Q9Z701) MurC/ddl bifunctional enzyme [Includes: UDP-... 28 8.5
6LBD42_ARATH (Q9CA30) LOB domain protein 42 28 8.5
7FZD1_RAT (Q08463) Frizzled 1 precursor (Frizzled-1) (Fz-1) (rFz1) 28 8.5
8FZD1_MOUSE (O70421) Frizzled 1 precursor (Frizzled-1) (Fz-1) (mFz1) 28 8.5

>LBD40_ARATH (Q9ZW96) LOB domain protein 40|
          Length = 233

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 198 LRTSCNGCAWERGWVLQKCCSWPCIH*EKRGESE 97
           +R SCNGC   R    + C   PC+   K  ES+
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQ 34



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>FZD1_HUMAN (Q9UP38) Frizzled 1 precursor (Frizzled-1) (Fz-1) (hFz1) (FzE1)|
          Length = 647

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -3

Query: 171 WERGWVLQKCCSW--PCIH*EKRG 106
           WER WV Q C S+  PC H +  G
Sbjct: 565 WERSWVAQSCKSYAIPCPHLQAGG 588



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>CUL7_HUMAN (Q14999) Cullin-7 (CUL-7)|
          Length = 1698

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 60   DLTYSLDKRFNSIRFLPASPNVYKAMNNIFVKPILAPRHNRCRMFGV 200
            D T SL    NS+  +P++  V    N     PI+  R  RC+  G+
Sbjct: 911  DSTSSLHTELNSVNVMPSASRVILLENLTRFWPIIQIRIKRCQQGGI 957



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>CUL7_PONPY (Q5RCJ3) Cullin-7 (CUL-7)|
          Length = 1729

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 60   DLTYSLDKRFNSIRFLPASPNVYKAMNNIFVKPILAPRHNRCRMFGV 200
            D T SL    NS+  +P++  V    N     PI+  R  RC+  G+
Sbjct: 942  DSTSSLHTELNSVNVMPSASRVILLENLTRFWPIIQIRIKRCQQGGI 988



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>MUDD_CHLPN (Q9Z701) MurC/ddl bifunctional enzyme [Includes:|
           UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)
           (UDP-N-acetylmuramoyl-L-alanine synthetase);
           D-alanine--D-alanine ligase (EC 6.3.2.4)
           (D-alanylalanine synthetase) (D-Ala-D-Ala ligase)]
          Length = 809

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -2

Query: 148 KMLFMALYTLGEAGRKRMLLNLLSSEYVKSFFVHLLAVTH 29
           +++   +Y+ GE+ R+ ++L+ L+ +  KS +VH   V H
Sbjct: 373 EVILTDVYSAGESPRESIILSDLAEQIRKSSYVHCCYVPH 412



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>LBD42_ARATH (Q9CA30) LOB domain protein 42|
          Length = 233

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 198 LRTSCNGCAWERGWVLQKCCSWPCIH*EKRGESE 97
           +R SCNGC   R    Q C   PC+   K  +S+
Sbjct: 1   MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQ 34



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>FZD1_RAT (Q08463) Frizzled 1 precursor (Frizzled-1) (Fz-1) (rFz1)|
          Length = 641

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -3

Query: 171 WERGWVLQKCCSW--PCIH 121
           WER WV Q C S+  PC H
Sbjct: 559 WERSWVAQSCKSYAIPCPH 577



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>FZD1_MOUSE (O70421) Frizzled 1 precursor (Frizzled-1) (Fz-1) (mFz1)|
          Length = 642

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -3

Query: 171 WERGWVLQKCCSW--PCIH 121
           WER WV Q C S+  PC H
Sbjct: 560 WERSWVAQSCKSYAIPCPH 578


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,906,616
Number of Sequences: 219361
Number of extensions: 534931
Number of successful extensions: 1310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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