>gb|AY123421.1| Triticum aestivum putative plastid ribosomal protein CL9 mRNA,
           complete cds
          Length = 767

 Score =  200 bits (101), Expect = 1e-48
 Identities = 151/166 (90%), Gaps = 5/166 (3%)
 Strand = Plus / Minus

                                                                       
Query: 48  tgaacaaaaaaggatttgacatattcacttgataaaagattcaacagcattcgctttctc 107
           ||||||||||||||||| | ||||||||||| ||||   ||||||||| |||||||||||
Sbjct: 760 tgaacaaaaaaggatttcatatattcacttg-taaatatttcaacagctttcgctttctc 702

                                                                       
Query: 108 cccgcttctcctaatgtatacaaggccatgaacaacatttttgtaaaacccatcctc--- 164
           | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||   
Sbjct: 701 cacgcttctcctaatgcatacaaggccatgaacaacatttttgtaaaacccatcctctat 642

                                                         
Query: 165 -gctcccaggcacaaccgttgcaggatgttcggagtatatggcgag 209
            ||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 641 agctcccaggcacaacagttgcaggacgttcggagtatatggcgag 596

>gb|AC090096.5| Homo sapiens chromosome 8, clone RP11-159C14, complete sequence
          Length = 173158

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1     ggataaaaaatctaatttattt 22
             ||||||||||||||||||||||
Sbjct: 24067 ggataaaaaatctaatttattt 24088

>gb|AC011884.8| Homo sapiens chromosome , clone RP11-17N6, complete sequence
          Length = 163009

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1      ggataaaaaatctaatttattt 22
              ||||||||||||||||||||||
Sbjct: 101510 ggataaaaaatctaatttattt 101531

>gb|AC171014.3| Gallus gallus BAC clone CH261-89A18 from chromosome ul, complete
             sequence
          Length = 181265

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 15    atttatttagcaaaatgggtca 36
             ||||||||||||||||||||||
Sbjct: 35565 atttatttagcaaaatgggtca 35544

>emb|CR318586.3| Zebrafish DNA sequence from clone CH211-239O22 in linkage group 7,
            complete sequence
          Length = 30205

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 92   cagcattcgctttctccccgcttct 116
            ||||||||||||||||||| |||||
Sbjct: 9247 cagcattcgctttctccccccttct 9223

>emb|AL732455.6| Zebrafish DNA sequence from clone CH211-225J17 in linkage group 7,
             complete sequence
          Length = 192578

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 92    cagcattcgctttctccccgcttct 116
             ||||||||||||||||||| |||||
Sbjct: 56677 cagcattcgctttctccccccttct 56701

>emb|CT476810.5| Zebrafish DNA sequence from clone ZFOS-260D6 in linkage group 7,
             complete sequence
          Length = 19313

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 92    cagcattcgctttctccccgcttct 116
             ||||||||||||||||||| |||||
Sbjct: 10067 cagcattcgctttctccccccttct 10091

>gb|AC091499.2| Drosophila melanogaster clone BACR33L22, complete sequence
          Length = 182105

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    aacatttttgtaaaacccat 160
              ||||||||||||||||||||
Sbjct: 100012 aacatttttgtaaaacccat 99993

>gb|AY460197.1| Notropis mekistocholas clone CFS15F2 microsatellite sequence
          Length = 539

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 41  caacaaatgaacaaaaaagg 60
           ||||||||||||||||||||
Sbjct: 205 caacaaatgaacaaaaaagg 224

>emb|AL354943.9| Human DNA sequence from clone RP11-160A9 on chromosome 6 Contains a
             solute carrier family 25 (mitochondrial carrier, adenine
             nucleotide translocator) member 6 (SLC25A6) pseudogene, an
             NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1
             (8kD, SDAP) (NDUFAB1) pseudogene, the 5' end of the gene
             for stromal membrane-associated protein SMAP1 and a CpG
             island, complete sequence
          Length = 151445

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    aaatgaacaaaaaaggatttgaca 68
             ||||||||||||||| ||||||||
Sbjct: 80466 aaatgaacaaaaaagcatttgaca 80489

>emb|AL139379.14| Human DNA sequence from clone RP11-358P11 on chromosome 13 Contains a
             CpG island, complete sequence
          Length = 166237

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    acaaaaaaggatttgacata 70
             ||||||||||||||||||||
Sbjct: 55683 acaaaaaaggatttgacata 55664

>emb|BX571680.7| Zebrafish DNA sequence from clone DKEY-30L20 in linkage group 7,
             complete sequence
          Length = 145338

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    aaaaaaggatttgacatatt 72
             ||||||||||||||||||||
Sbjct: 55372 aaaaaaggatttgacatatt 55353

>emb|AL592465.8| Mouse DNA sequence from clone RP23-36C4 on chromosome 11 Contains the
              Tbx4 gene for T-box 4, a ribosomal protein L21 (Rpl21)
              pseudogene and the 3' end of the Brip1 gene for BRCA1
              interacting protein C-terminal helicase 1, complete
              sequence
          Length = 238358

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 38     tgccaacaaatgaacaaaaaagga 61
              |||||| |||||||||||||||||
Sbjct: 131449 tgccaagaaatgaacaaaaaagga 131426

>emb|BX470065.7| Zebrafish DNA sequence from clone DKEY-105H11 in linkage group 24,
              complete sequence
          Length = 198444

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      taaaaaatctaatttattta 23
              ||||||||||||||||||||
Sbjct: 157046 taaaaaatctaatttattta 157065

>gb|AC012295.20| Mus musculus chromosome 11, clone RP23-48A17, complete sequence
          Length = 187364

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 38     tgccaacaaatgaacaaaaaagga 61
              |||||| |||||||||||||||||
Sbjct: 184895 tgccaagaaatgaacaaaaaagga 184872

>gb|AC008820.6| Homo sapiens chromosome 5 clone CTD-2127F10, complete sequence
          Length = 59624

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    aacaaatgaacaaaaaagga 61
             ||||||||||||||||||||
Sbjct: 15797 aacaaatgaacaaaaaagga 15816

>emb|BX649242.6| Zebrafish DNA sequence from clone DKEY-264C3 in linkage group 17,
             complete sequence
          Length = 147772

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aaaaaatctaatttatttag 24
             ||||||||||||||||||||
Sbjct: 47263 aaaaaatctaatttatttag 47244

>gb|AY999064.1| Equus caballus platelet glycoprotein IIIa integrin subunit beta 3
            mRNA, complete cds
          Length = 2739

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 23   agcaaaatgggtcactgccaacaa 46
            ||||||||||| ||||||||||||
Sbjct: 2274 agcaaaatgggacactgccaacaa 2297

>gb|AC016722.9| Homo sapiens BAC clone RP11-333I13 from 2, complete sequence
          Length = 149995

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    gccaacaaatgaacaaaaaa 58
             ||||||||||||||||||||
Sbjct: 53799 gccaacaaatgaacaaaaaa 53780

>emb|BX005043.8| Zebrafish DNA sequence from clone DKEY-3E19 in linkage group 14,
             complete sequence
          Length = 238499

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   gcttctcctaatgtatacaa 130
             ||||||||||||||||||||
Sbjct: 27669 gcttctcctaatgtatacaa 27650

>emb|CR318601.8| Zebrafish DNA sequence from clone CH211-274E20 in linkage group 7,
              complete sequence
          Length = 165501

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     aaaaaaggatttgacatatt 72
              ||||||||||||||||||||
Sbjct: 131842 aaaaaaggatttgacatatt 131823

>gb|AC007453.1|AC007453 Drosophila melanogaster, chromosome 2R, region 49C1-49D3, P1 clones
              DS04499, DS06146, and DS00455, complete sequence
          Length = 145055

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    aacatttttgtaaaacccat 160
              ||||||||||||||||||||
Sbjct: 136775 aacatttttgtaaaacccat 136756

>gb|AE003820.3| Drosophila melanogaster chromosome 2R, section 30 of 73 of the complete
             sequence
          Length = 263912

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   aacatttttgtaaaacccat 160
             ||||||||||||||||||||
Sbjct: 20987 aacatttttgtaaaacccat 20968

>gb|AC161462.5| Gallus gallus BAC clone CH261-174G12 from chromosome ul, complete
              sequence
          Length = 238858

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      aaaaatctaatttatttagc 25
              ||||||||||||||||||||
Sbjct: 229957 aaaaatctaatttatttagc 229976

>emb|BX004863.7| Zebrafish DNA sequence from clone DKEY-183N2 in linkage group 7,
           complete sequence
          Length = 44979

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   aaaaaatctaatttatttag 24
           ||||||||||||||||||||
Sbjct: 228 aaaaaatctaatttatttag 209

>emb|BX088570.6| Mouse DNA sequence from clone RP23-292J1 on chromosome 4, complete
              sequence
          Length = 244187

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     aatgaacaaaaaaggatttg 65
              ||||||||||||||||||||
Sbjct: 202493 aatgaacaaaaaaggatttg 202474

>dbj|AP004935.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02L13, TM0095b,
            complete sequence
          Length = 6348

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   aatttatttagcaaaatggg 33
            ||||||||||||||||||||
Sbjct: 1525 aatttatttagcaaaatggg 1506


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,599,283
Number of Sequences: 3902068
Number of extensions: 2599283
Number of successful extensions: 206909
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 206832
Number of HSP's gapped (non-prelim): 75
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)