ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99b09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC091278.6| Mus musculus chromosome 1, clone RP23-294D6, comp... 42 0.42
2gb|AC161364.4| Mus musculus BAC clone RP24-353J16 from chromosom... 42 0.42
3gb|AC131673.4| Mus musculus BAC clone RP23-321P21 from 1, comple... 42 0.42
4gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosom... 40 1.7
5emb|AL137843.4| Human DNA sequence from clone RP3-377O6 on chrom... 40 1.7
6gb|AC093754.2| Homo sapiens BAC clone RP11-51G24 from 4, complet... 40 1.7
7gb|AC009497.3| Homo sapiens BAC clone RP11-502N7 from 2, complet... 40 1.7
8gb|AC011507.3|AC011507 Homo sapiens chromosome 19 clone CTD-2131... 40 1.7
9gb|AC107844.11| Mus musculus chromosome 19, clone RP23-308C2, co... 40 1.7
10dbj|AB073313.1| Asterina pectinifera sfRSK mRNA for p90 ribosoma... 40 1.7
11gb|AC120533.4| Oryza sativa (japonica cultivar-group) chromosome... 38 6.5
12gb|U42832.2| Caenorhabditis elegans cosmid F01E11, complete sequ... 38 6.5
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 6.5
14gb|AC124701.2| Mus musculus BAC clone RP24-229N16 from chromosom... 38 6.5
15gb|AC126427.4| Mus musculus BAC clone RP24-365B12 from chromosom... 38 6.5
16gb|AC130207.3| Mus musculus BAC clone RP24-461N3 from chromosome... 38 6.5
17gb|AC121967.3| Mus musculus BAC clone RP24-268P11 from chromosom... 38 6.5
18gb|AC123872.4| Mus musculus BAC clone RP23-254P8 from 2, complet... 38 6.5
19emb|AL392048.9| Human DNA sequence from clone RP11-305D15 on chr... 38 6.5
20emb|AL590153.9| Zebrafish DNA sequence from clone RP71-71M17 in ... 38 6.5
21gb|AC090610.6| Homo sapiens chromosome 17, clone RP11-493I24, co... 38 6.5
22gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic ... 38 6.5
23dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
24dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
26gb|AC159136.7| Mus musculus 10 BAC RP23-58L22 (Roswell Park Canc... 38 6.5
27dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
28dbj|AK119517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.5
29ref|XM_314885.2| Anopheles gambiae str. PEST ENSANGP00000012355 ... 38 6.5
30dbj|AK100650.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.5
31dbj|AK100585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.5
32dbj|AK064827.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.5
33dbj|AK061649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.5
34gb|AC152983.2| Mus musculus 10 BAC RP23-17L11 (Roswell Park Canc... 38 6.5
35gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.5
36gb|AC158363.2| Mus musculus BAC clone RP23-214J3 from chromosome... 38 6.5
37emb|AL928811.8| Mouse DNA sequence from clone RP23-74P23 on chro... 38 6.5
38gb|L11910.1|HUMRETBLAS Human retinoblastoma susceptibility gene ... 38 6.5
39gb|AC170753.7| Mus musculus BAC RP24-547D11 (Roswell Park Cance... 38 6.5
40gb|AF551763.1| Homo sapiens retinoblastoma 1 (including osteosar... 38 6.5 
>gb|AC091278.6| Mus musculus chromosome 1, clone RP23-294D6, complete sequence
          Length = 244656

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 116    gtaccaaaaccatacagattt 136
              |||||||||||||||||||||
Sbjct: 133123 gtaccaaaaccatacagattt 133143
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>gb|AC161364.4| Mus musculus BAC clone RP24-353J16 from chromosome 6, complete sequence
          Length = 182872

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 44     gcactgcagctggaacatcta 64
              |||||||||||||||||||||
Sbjct: 111597 gcactgcagctggaacatcta 111577
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>gb|AC131673.4| Mus musculus BAC clone RP23-321P21 from 1, complete sequence
          Length = 262190

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 116  gtaccaaaaccatacagattt 136
            |||||||||||||||||||||
Sbjct: 6552 gtaccaaaaccatacagattt 6532
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>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete sequence
          Length = 184128

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 81     aaagaatgctatgggcagacatga 104
              ||||||||| ||||||||||||||
Sbjct: 139894 aaagaatgcaatgggcagacatga 139871
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>emb|AL137843.4| Human DNA sequence from clone RP3-377O6 on chromosome Xq22.2-23
             Contains a thyroid autoantigen 70kDa (Ku antigen) (G22P1)
             pseudogene, complete sequence
          Length = 133402

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     aacaaaatactgaaattcgt 21
             ||||||||||||||||||||
Sbjct: 97001 aacaaaatactgaaattcgt 96982
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>gb|AC093754.2| Homo sapiens BAC clone RP11-51G24 from 4, complete sequence
          Length = 149920

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     acatgaacagagtaaaagaa 86
              ||||||||||||||||||||
Sbjct: 115355 acatgaacagagtaaaagaa 115374
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>gb|AC009497.3| Homo sapiens BAC clone RP11-502N7 from 2, complete sequence
          Length = 183105

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   taccaaaaccatacagattt 136
             ||||||||||||||||||||
Sbjct: 48514 taccaaaaccatacagattt 48533
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>gb|AC011507.3|AC011507 Homo sapiens chromosome 19 clone CTD-2131C11, complete sequence
          Length = 129643

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    atgaacagagtaaaagaatg 88
             ||||||||||||||||||||
Sbjct: 29440 atgaacagagtaaaagaatg 29421
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>gb|AC107844.11| Mus musculus chromosome 19, clone RP23-308C2, complete sequence
          Length = 194040

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    aaagaatgctatgggcagacatga 104
             ||||||||| ||||||||||||||
Sbjct: 24705 aaagaatgcaatgggcagacatga 24682
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>dbj|AB073313.1| Asterina pectinifera sfRSK mRNA for p90 ribosomal S6 kinase, complete
            cds
          Length = 2382

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   cctttcatcaattccatcac 43
            ||||||||||||||||||||
Sbjct: 1637 cctttcatcaattccatcac 1618
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>gb|AC120533.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0081F16 map E50055S, complete sequence
          Length = 148220

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 24   cctttcatcaattccatca 42
            |||||||||||||||||||
Sbjct: 7932 cctttcatcaattccatca 7950
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>gb|U42832.2| Caenorhabditis elegans cosmid F01E11, complete sequence
          Length = 41355

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1    aaacaaaatactgaaattc 19
            |||||||||||||||||||
Sbjct: 3814 aaacaaaatactgaaattc 3796
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 31       tcaattccatcacgcactg 49
                |||||||||||||||||||
Sbjct: 34353768 tcaattccatcacgcactg 34353750
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>gb|AC124701.2| Mus musculus BAC clone RP24-229N16 from chromosome 19, complete sequence
          Length = 140801

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 116    gtaccaaaaccatacagattttt 138
              ||||||||||||||||| |||||
Sbjct: 135832 gtaccaaaaccatacagtttttt 135854
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>gb|AC126427.4| Mus musculus BAC clone RP24-365B12 from chromosome 15, complete
             sequence
          Length = 151506

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 118   accaaaaccatacagattt 136
             |||||||||||||||||||
Sbjct: 25792 accaaaaccatacagattt 25774
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>gb|AC130207.3| Mus musculus BAC clone RP24-461N3 from chromosome 19, complete sequence
          Length = 134655

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 116    gtaccaaaaccatacagattttt 138
              ||||||||||||||||| |||||
Sbjct: 113373 gtaccaaaaccatacagtttttt 113351
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>gb|AC121967.3| Mus musculus BAC clone RP24-268P11 from chromosome 19, complete sequence
          Length = 185775

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 116    gtaccaaaaccatacagattttt 138
              ||||||||||||||||| |||||
Sbjct: 107375 gtaccaaaaccatacagtttttt 107397
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>gb|AC123872.4| Mus musculus BAC clone RP23-254P8 from 2, complete sequence
          Length = 185953

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 63     taggacatgaacagagtaa 81
              |||||||||||||||||||
Sbjct: 119887 taggacatgaacagagtaa 119905
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>emb|AL392048.9| Human DNA sequence from clone RP11-305D15 on chromosome 13 Contains the
             5' end of the RB1 gene for retinoblastoma 1 (including
             osteosarcoma), two novel genes, the gene for purinergic
             receptor (family A group 5) (P2Y5), a PEST-containing
             nuclear protein (PCNP) pseudogene, a KIAA0649 gene product
             pseudogene, the 3' end of a novel gene and three CpG
             islands, complete sequence
          Length = 137342

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    tgtcctttcatcaattcca 39
             |||||||||||||||||||
Sbjct: 52178 tgtcctttcatcaattcca 52160
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>emb|AL590153.9| Zebrafish DNA sequence from clone RP71-71M17 in linkage group 8
             Contains a novel gene and part of a novel gene for a
             protein similar to mouse silencing mediator of retinoic
             acid and thyroid hormone receptor (SMRT), complete
             sequence
          Length = 133947

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 120   caaaaccatacagattttt 138
             |||||||||||||||||||
Sbjct: 26322 caaaaccatacagattttt 26340
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>gb|AC090610.6| Homo sapiens chromosome 17, clone RP11-493I24, complete sequence
          Length = 185980

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 45     cactgcagctggaacatct 63
              |||||||||||||||||||
Sbjct: 140316 cactgcagctggaacatct 140298
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>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete
             sequence
          Length = 115393

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    tcaattccatcacgcactg 49
             |||||||||||||||||||
Sbjct: 95926 tcaattccatcacgcactg 95944
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 24      cctttcatcaattccatca 42
               |||||||||||||||||||
Sbjct: 3002562 cctttcatcaattccatca 3002580
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 31       tcaattccatcacgcactg 49
                |||||||||||||||||||
Sbjct: 34444240 tcaattccatcacgcactg 34444222
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                               
Query: 106      ggaaactgtcgtaccaaaaccatacagattt 136
                |||| |||||||  |||||||||||||||||
Sbjct: 27265104 ggaatctgtcgttgcaaaaccatacagattt 27265074
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>gb|AC159136.7| Mus musculus 10 BAC RP23-58L22 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 207997

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 72     aacagagtaaaagaatgct 90
              |||||||||||||||||||
Sbjct: 116835 aacagagtaaaagaatgct 116853
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>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0684A08
          Length = 137841

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                             
Query: 106    ggaaactgtcgtaccaaaaccatacagattt 136
              |||| |||||||  |||||||||||||||||
Sbjct: 115775 ggaatctgtcgttgcaaaaccatacagattt 115745
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>dbj|AK119517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C05, full
            insert sequence
          Length = 2055

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 106  ggaaactgtcgtaccaaaaccatacagattt 136
            |||| |||||||  |||||||||||||||||
Sbjct: 1769 ggaatctgtcgttgcaaaaccatacagattt 1739
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>ref|XM_314885.2| Anopheles gambiae str. PEST ENSANGP00000012355
           (ENSANGG00000009866), partial mRNA
          Length = 1865

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 38  catcacgcactgcagctgg 56
           |||||||||||||||||||
Sbjct: 795 catcacgcactgcagctgg 813
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>dbj|AK100650.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D06, full
            insert sequence
          Length = 2089

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 106  ggaaactgtcgtaccaaaaccatacagattt 136
            |||| |||||||  |||||||||||||||||
Sbjct: 1766 ggaatctgtcgttgcaaaaccatacagattt 1736
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>dbj|AK100585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106B08, full
            insert sequence
          Length = 2977

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 106  ggaaactgtcgtaccaaaaccatacagattt 136
            |||| |||||||  |||||||||||||||||
Sbjct: 2827 ggaatctgtcgttgcaaaaccatacagattt 2797
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>dbj|AK064827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F07, full
            insert sequence
          Length = 1984

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 106  ggaaactgtcgtaccaaaaccatacagattt 136
            |||| |||||||  |||||||||||||||||
Sbjct: 1765 ggaatctgtcgttgcaaaaccatacagattt 1735
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>dbj|AK061649.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C02, full
            insert sequence
          Length = 1697

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 106  ggaaactgtcgtaccaaaaccatacagattt 136
            |||| |||||||  |||||||||||||||||
Sbjct: 1392 ggaatctgtcgttgcaaaaccatacagattt 1362
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>gb|AC152983.2| Mus musculus 10 BAC RP23-17L11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 224120

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 116   gtaccaaaaccatacagattttt 138
             ||||||| |||||||||||||||
Sbjct: 66017 gtaccaataccatacagattttt 65995
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 24      cctttcatcaattccatca 42
               |||||||||||||||||||
Sbjct: 3011593 cctttcatcaattccatca 3011611
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>gb|AC158363.2| Mus musculus BAC clone RP23-214J3 from chromosome 15, complete sequence
          Length = 228138

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 118    accaaaaccatacagattt 136
              |||||||||||||||||||
Sbjct: 171495 accaaaaccatacagattt 171477
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>emb|AL928811.8| Mouse DNA sequence from clone RP23-74P23 on chromosome 2, complete
              sequence
          Length = 222061

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 63     taggacatgaacagagtaa 81
              |||||||||||||||||||
Sbjct: 202520 taggacatgaacagagtaa 202502
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>gb|L11910.1|HUMRETBLAS Human retinoblastoma susceptibility gene exons 1-27, complete cds
          Length = 180388

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    tgtcctttcatcaattcca 39
             |||||||||||||||||||
Sbjct: 37468 tgtcctttcatcaattcca 37450
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>gb|AC170753.7| Mus musculus  BAC RP24-547D11 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 234156

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 72    aacagagtaaaagaatgct 90
             |||||||||||||||||||
Sbjct: 33109 aacagagtaaaagaatgct 33091
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>gb|AF551763.1| Homo sapiens retinoblastoma 1 (including osteosarcoma) (RB1) and
             purinergic receptor (family A group 5) (P2Y5) genes,
             complete cds
          Length = 180782

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    tgtcctttcatcaattcca 39
             |||||||||||||||||||
Sbjct: 38728 tgtcctttcatcaattcca 38710


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,472,313
Number of Sequences: 3902068
Number of extensions: 1472313
Number of successful extensions: 119194
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118967
Number of HSP's gapped (non-prelim): 227
length of query: 138
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 117
effective length of database: 17,151,101,840
effective search space: 2006678915280
effective search space used: 2006678915280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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