ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192099.1| Oryza sativa (japonica cultivar-group), predic... 182 5e-43
2dbj|AK121587.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 5e-43
3dbj|AK098893.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 5e-43
4dbj|AK060428.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 5e-43
5dbj|D38231.1|RICGPBSLP Oryza sativa (japonica cultivar-group) RW... 182 5e-43
6dbj|AK098877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 8e-42
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
8dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
9dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
10ref|XM_475866.1| Oryza sativa (japonica cultivar-group), predic... 76 9e-11
11dbj|AK121567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 9e-11
12dbj|AK065272.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 9e-11
13dbj|AK062179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 9e-11
14gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 74 3e-10
15gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome... 74 3e-10
16dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
17gb|BT016269.1| Zea mays clone Contig102 mRNA sequence 64 3e-07
18gb|AY103919.1| Zea mays PCO099246 mRNA sequence 64 3e-07
19gb|BT017990.1| Zea mays clone EL01N0526B03.c mRNA sequence 56 8e-05
20gb|BT016705.1| Zea mays clone Contig538 mRNA sequence 50 0.005
21gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 44 0.30
22ref|XM_729184.1| Plasmodium chabaudi chabaudi Pc-fam-4 protein (... 40 4.8
23gb|U39645.1| Caenorhabditis elegans cosmid C14F11, complete sequ... 40 4.8
24emb|AL356107.21| Human DNA sequence from clone RP11-484D5 on chr... 40 4.8
25gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, comp... 40 4.8
26gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold 40 4.8
27gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, com... 40 4.8
28gb|AC023389.13| Homo sapiens chromosome 17, clone RP11-82O19, co... 40 4.8 
>ref|NM_192099.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1005

 Score =  182 bits (92), Expect = 5e-43
 Identities = 149/168 (88%)
 Strand = Plus / Minus

                                                                       
Query: 191 gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgtaaccagcatagag 250
           ||||||||| || |||||||||||||| |  ||||||||||| |||||||||||||||||
Sbjct: 996 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgtaaccagcatagag 937

                                                                       
Query: 251 agtgctgccatccgcgctccagctcaagcaagtgcagtagagcatctgtttgctggagac 310
            ||||| ||||| ||||||||| ||||||  ||||||||||||||||| ||  |||||||
Sbjct: 936 ggtgcttccatctgcgctccagttcaagcttgtgcagtagagcatctggttcttggagac 877

                                                           
Query: 311 tgggacctcgggcctaaggtcctgcacgatgtgctttgactcaagatc 358
            |||| ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 876 agggatctcgggcttaaggtcctgcacaatgtgctttgactcaagatc 829
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>dbj|AK121587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037K24, full
            insert sequence
          Length = 1358

 Score =  182 bits (92), Expect = 5e-43
 Identities = 149/168 (88%)
 Strand = Plus / Minus

                                                                        
Query: 191  gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgtaaccagcatagag 250
            ||||||||| || |||||||||||||| |  ||||||||||| |||||||||||||||||
Sbjct: 1094 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgtaaccagcatagag 1035

                                                                        
Query: 251  agtgctgccatccgcgctccagctcaagcaagtgcagtagagcatctgtttgctggagac 310
             ||||| ||||| ||||||||| ||||||  ||||||||||||||||| ||  |||||||
Sbjct: 1034 ggtgcttccatctgcgctccagttcaagcttgtgcagtagagcatctggttcttggagac 975

                                                            
Query: 311  tgggacctcgggcctaaggtcctgcacgatgtgctttgactcaagatc 358
             |||| ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 974  agggatctcgggcttaaggtcctgcacaatgtgctttgactcaagatc 927
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>dbj|AK098893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001N15, full
            insert sequence
          Length = 1256

 Score =  182 bits (92), Expect = 5e-43
 Identities = 149/168 (88%)
 Strand = Plus / Minus

                                                                        
Query: 191  gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgtaaccagcatagag 250
            ||||||||| || |||||||||||||| |  ||||||||||| |||||||||||||||||
Sbjct: 1065 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgtaaccagcatagag 1006

                                                                        
Query: 251  agtgctgccatccgcgctccagctcaagcaagtgcagtagagcatctgtttgctggagac 310
             ||||| ||||| ||||||||| ||||||  ||||||||||||||||| ||  |||||||
Sbjct: 1005 ggtgcttccatctgcgctccagttcaagcttgtgcagtagagcatctggttcttggagac 946

                                                            
Query: 311  tgggacctcgggcctaaggtcctgcacgatgtgctttgactcaagatc 358
             |||| ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 945  agggatctcgggcttaaggtcctgcacaatgtgctttgactcaagatc 898
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>dbj|AK060428.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A02, full
            insert sequence
          Length = 1351

 Score =  182 bits (92), Expect = 5e-43
 Identities = 149/168 (88%)
 Strand = Plus / Minus

                                                                        
Query: 191  gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgtaaccagcatagag 250
            ||||||||| || |||||||||||||| |  ||||||||||| |||||||||||||||||
Sbjct: 1088 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgtaaccagcatagag 1029

                                                                        
Query: 251  agtgctgccatccgcgctccagctcaagcaagtgcagtagagcatctgtttgctggagac 310
             ||||| ||||| ||||||||| ||||||  ||||||||||||||||| ||  |||||||
Sbjct: 1028 ggtgcttccatctgcgctccagttcaagcttgtgcagtagagcatctggttcttggagac 969

                                                            
Query: 311  tgggacctcgggcctaaggtcctgcacgatgtgctttgactcaagatc 358
             |||| ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 968  agggatctcgggcttaaggtcctgcacaatgtgctttgactcaagatc 921
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>dbj|D38231.1|RICGPBSLP Oryza sativa (japonica cultivar-group) RWD mRNA for q group of
            receptor for activated C-kinase, complete cds
          Length = 1285

 Score =  182 bits (92), Expect = 5e-43
 Identities = 149/168 (88%)
 Strand = Plus / Minus

                                                                        
Query: 191  gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgtaaccagcatagag 250
            ||||||||| || |||||||||||||| |  ||||||||||| |||||||||||||||||
Sbjct: 1022 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgtaaccagcatagag 963

                                                                        
Query: 251  agtgctgccatccgcgctccagctcaagcaagtgcagtagagcatctgtttgctggagac 310
             ||||| ||||| ||||||||| ||||||  ||||||||||||||||| ||  |||||||
Sbjct: 962  ggtgcttccatctgcgctccagttcaagcttgtgcagtagagcatctggttcttggagac 903

                                                            
Query: 311  tgggacctcgggcctaaggtcctgcacgatgtgctttgactcaagatc 358
             |||| ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 902  agggatctcgggcttaaggtcctgcacaatgtgctttgactcaagatc 855
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>dbj|AK098877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E12, full
            insert sequence
          Length = 1326

 Score =  178 bits (90), Expect = 8e-42
 Identities = 147/166 (88%)
 Strand = Plus / Minus

                                                                        
Query: 191  gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgtaaccagcatagag 250
            ||||||||| || |||||||||||||| |  ||||||||||| |||||||||||||||||
Sbjct: 1082 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgtaaccagcatagag 1023

                                                                        
Query: 251  agtgctgccatccgcgctccagctcaagcaagtgcagtagagcatctgtttgctggagac 310
             ||||| ||||| ||||||||| ||||||  ||||||||||||||||| ||  |||||||
Sbjct: 1022 ggtgcttccatctgcgctccagttcaagcttgtgcagtagagcatctggttcttggagac 963

                                                          
Query: 311  tgggacctcgggcctaaggtcctgcacgatgtgctttgactcaaga 356
             |||| ||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 962  agggatctcgggcttaaggtcctgcacaatgtgctttgactcaaga 917
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  119 bits (60), Expect = 6e-24
 Identities = 96/108 (88%)
 Strand = Plus / Minus

                                                                            
Query: 191      gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgtaaccagcatagag 250
                ||||||||| || |||||||||||||| |  ||||||||||| |||||||||||||||||
Sbjct: 28326312 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgtaaccagcatagag 28326253

                                                                
Query: 251      agtgctgccatccgcgctccagctcaagcaagtgcagtagagcatctg 298
                 ||||| ||||| ||||||||| ||||||  |||||||||||||||||
Sbjct: 28326252 ggtgcttccatctgcgctccagttcaagcttgtgcagtagagcatctg 28326205



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 304      tggagactgggacctcgggcctaaggtcctgcacgatgtgctttgactcaagatc 358
                ||||||| |||| ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 28325037 tggagacagggatctcgggcttaaggtcctgcacaatgtgctttgactcaagatc 28324983
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>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0478H03
          Length = 167560

 Score =  119 bits (60), Expect = 6e-24
 Identities = 96/108 (88%)
 Strand = Plus / Minus

                                                                          
Query: 191    gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgtaaccagcatagag 250
              ||||||||| || |||||||||||||| |  ||||||||||| |||||||||||||||||
Sbjct: 160819 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgtaaccagcatagag 160760

                                                              
Query: 251    agtgctgccatccgcgctccagctcaagcaagtgcagtagagcatctg 298
               ||||| ||||| ||||||||| ||||||  |||||||||||||||||
Sbjct: 160759 ggtgcttccatctgcgctccagttcaagcttgtgcagtagagcatctg 160712



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                     
Query: 304    tggagactgggacctcgggcctaaggtcctgcacgatgtgctttgactcaagatc 358
              ||||||| |||| ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 159544 tggagacagggatctcgggcttaaggtcctgcacaatgtgctttgactcaagatc 159490
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>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0519D04
          Length = 193068

 Score =  119 bits (60), Expect = 6e-24
 Identities = 96/108 (88%)
 Strand = Plus / Minus

                                                                         
Query: 191   gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgtaaccagcatagag 250
             ||||||||| || |||||||||||||| |  ||||||||||| |||||||||||||||||
Sbjct: 41412 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgtaaccagcatagag 41353

                                                             
Query: 251   agtgctgccatccgcgctccagctcaagcaagtgcagtagagcatctg 298
              ||||| ||||| ||||||||| ||||||  |||||||||||||||||
Sbjct: 41352 ggtgcttccatctgcgctccagttcaagcttgtgcagtagagcatctg 41305



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                    
Query: 304   tggagactgggacctcgggcctaaggtcctgcacgatgtgctttgactcaagatc 358
             ||||||| |||| ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 40137 tggagacagggatctcgggcttaaggtcctgcacaatgtgctttgactcaagatc 40083
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>ref|XM_475866.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1011

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                       
Query: 225 gttccatcagtgtaaccagcatagagagtgctgccatccgcgctccagctcaagcaagtg 284
           |||||||||||||| |||||  |||| ||||||||||| |||||||||||||| |  |||
Sbjct: 965 gttccatcagtgtagccagcgaagagggtgctgccatcagcgctccagctcaaacttgtg 906

                         
Query: 285 cagtagagcatctg 298
           ||||| ||||||||
Sbjct: 905 cagtacagcatctg 892
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>dbj|AK121567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034P13, full
            insert sequence
          Length = 1385

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 225  gttccatcagtgtaaccagcatagagagtgctgccatccgcgctccagctcaagcaagtg 284
            |||||||||||||| |||||  |||| ||||||||||| |||||||||||||| |  |||
Sbjct: 1040 gttccatcagtgtagccagcgaagagggtgctgccatcagcgctccagctcaaacttgtg 981

                          
Query: 285  cagtagagcatctg 298
            ||||| ||||||||
Sbjct: 980  cagtacagcatctg 967
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>dbj|AK065272.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L07, full
            insert sequence
          Length = 1227

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 225  gttccatcagtgtaaccagcatagagagtgctgccatccgcgctccagctcaagcaagtg 284
            |||||||||||||| |||||  |||| ||||||||||| |||||||||||||| |  |||
Sbjct: 1033 gttccatcagtgtagccagcgaagagggtgctgccatcagcgctccagctcaaacttgtg 974

                          
Query: 285  cagtagagcatctg 298
            ||||| ||||||||
Sbjct: 973  cagtacagcatctg 960
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>dbj|AK062179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-D07, full
            insert sequence
          Length = 1412

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 225  gttccatcagtgtaaccagcatagagagtgctgccatccgcgctccagctcaagcaagtg 284
            |||||||||||||| |||||  |||| ||||||||||| |||||||||||||| |  |||
Sbjct: 1042 gttccatcagtgtagccagcgaagagggtgctgccatcagcgctccagctcaaacttgtg 983

                          
Query: 285  cagtagagcatctg 298
            ||||| ||||||||
Sbjct: 982  cagtacagcatctg 969
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>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23,
              complete sequence
          Length = 191765

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                          
Query: 225    gttccatcagtgtaaccagcatagagagtgctgccatccgcgctccagctcaagcaagtg 284
              |||||||||||||| |||||  |||| ||||||||||| |||||||||||||| |  |||
Sbjct: 114376 gttccatcagtgtagccagcgaagagggtgctgccatcagcgctccagctcaaacttgtg 114435

                           
Query: 285    cagtagagcatct 297
              ||||| |||||||
Sbjct: 114436 cagtacagcatct 114448
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>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03,
              complete sequence
          Length = 177861

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                          
Query: 225    gttccatcagtgtaaccagcatagagagtgctgccatccgcgctccagctcaagcaagtg 284
              |||||||||||||| |||||  |||| ||||||||||| |||||||||||||| |  |||
Sbjct: 170804 gttccatcagtgtagccagcgaagagggtgctgccatcagcgctccagctcaaacttgtg 170863

                           
Query: 285    cagtagagcatct 297
              ||||| |||||||
Sbjct: 170864 cagtacagcatct 170876
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                            
Query: 225      gttccatcagtgtaaccagcatagagagtgctgccatccgcgctccagctcaagcaagtg 284
                |||||||||||||| |||||  |||| ||||||||||| |||||||||||||| |  |||
Sbjct: 27239408 gttccatcagtgtagccagcgaagagggtgctgccatcagcgctccagctcaaacttgtg 27239467

                             
Query: 285      cagtagagcatct 297
                ||||| |||||||
Sbjct: 27239468 cagtacagcatct 27239480
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>gb|BT016269.1| Zea mays clone Contig102 mRNA sequence
          Length = 1254

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 104/128 (81%)
 Strand = Plus / Minus

                                                                        
Query: 228  ccatcagtgtaaccagcatagagagtgctgccatccgcgctccagctcaagcaagtgcag 287
            ||||| ||||| ||||  ||||| ||||| ||||| ||||||||||||||||  ||||||
Sbjct: 1025 ccatcggtgtagccagtgtagagggtgcttccatcggcgctccagctcaagcttgtgcag 966

                                                                        
Query: 288  tagagcatctgtttgctggagactgggacctcgggcctaaggtcctgcacgatgtgcttt 347
            || || ||||| ||  ||||||   |||  || ||| | ||||||||||||| |||||| 
Sbjct: 965  tacaggatctggttcttggagatctggatgtcaggcttgaggtcctgcacgacgtgcttc 906

                    
Query: 348  gactcaag 355
            ||||||||
Sbjct: 905  gactcaag 898
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>gb|AY103919.1| Zea mays PCO099246 mRNA sequence
          Length = 1461

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 104/128 (81%)
 Strand = Plus / Minus

                                                                        
Query: 228  ccatcagtgtaaccagcatagagagtgctgccatccgcgctccagctcaagcaagtgcag 287
            ||||| ||||| ||||  ||||| ||||| ||||| ||||||||||||||||  ||||||
Sbjct: 1182 ccatcggtgtagccagtgtagagggtgcttccatcggcgctccagctcaagcttgtgcag 1123

                                                                        
Query: 288  tagagcatctgtttgctggagactgggacctcgggcctaaggtcctgcacgatgtgcttt 347
            || || ||||| ||  ||||||   |||  || ||| | ||||||||||||| |||||| 
Sbjct: 1122 tacaggatctggttcttggagatctggatgtcaggcttgaggtcctgcacgacgtgcttc 1063

                    
Query: 348  gactcaag 355
            ||||||||
Sbjct: 1062 gactcaag 1055
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>gb|BT017990.1| Zea mays clone EL01N0526B03.c mRNA sequence
          Length = 1281

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 103/128 (80%)
 Strand = Plus / Minus

                                                                        
Query: 228  ccatcagtgtaaccagcatagagagtgctgccatccgcgctccagctcaagcaagtgcag 287
            ||||| ||||| ||||  ||||| | ||| ||||| ||||||||||||||||  ||||||
Sbjct: 1034 ccatcggtgtagccagtgtagagggggcttccatcggcgctccagctcaagcttgtgcag 975

                                                                        
Query: 288  tagagcatctgtttgctggagactgggacctcgggcctaaggtcctgcacgatgtgcttt 347
            || || ||||| ||  ||||||   |||  || ||| | ||||||||||||| |||||| 
Sbjct: 974  tacaggatctggttcttggagatctggatgtcaggcttgaggtcctgcacgacgtgcttc 915

                    
Query: 348  gactcaag 355
            ||||||||
Sbjct: 914  gactcaag 907
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>gb|BT016705.1| Zea mays clone Contig538 mRNA sequence
          Length = 1265

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 100/125 (80%)
 Strand = Plus / Minus

                                                                        
Query: 228  ccatcagtgtaaccagcatagagagtgctgccatccgcgctccagctcaagcaagtgcag 287
            ||||| ||||| ||||  ||||| ||||| || ||||| |||||||||||||  || |||
Sbjct: 1025 ccatcggtgtagccagtgtagagggtgcttccgtccgcactccagctcaagcttgtacag 966

                                                                        
Query: 288  tagagcatctgtttgctggagactgggacctcgggcctaaggtcctgcacgatgtgcttt 347
            || || ||||| ||  |||||||  |||  |||||| | ||||||||||| | |||||| 
Sbjct: 965  tacaggatctggttcttggagacctggatgtcgggcttgaggtcctgcacaacgtgcttc 906

                 
Query: 348  gactc 352
            |||||
Sbjct: 905  gactc 901
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 224    ggttccatcagtgtaaccagca 245
              ||||||||||||||||||||||
Sbjct: 801697 ggttccatcagtgtaaccagca 801718
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>ref|XM_729184.1| Plasmodium chabaudi chabaudi Pc-fam-4 protein (PC403777.00.0)
           partial mRNA
          Length = 643

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 gccactaaaacaagatacat 178
           ||||||||||||||||||||
Sbjct: 269 gccactaaaacaagatacat 288
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>gb|U39645.1| Caenorhabditis elegans cosmid C14F11, complete sequence
          Length = 40572

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    tatccatgagatcatgactg 53
             ||||||||||||||||||||
Sbjct: 11564 tatccatgagatcatgactg 11545
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>emb|AL356107.21| Human DNA sequence from clone RP11-484D5 on chromosome 13 Contains the
             gene for a novel protein similar to transforming growth
             factor beta-stimulated protein (TSC-22),  SMARCE1 (SWI/SNF
             related, matrix associated, actin dependent regulator of
             chromatin, subfamily e, member 1 ) pseudogene and a CpG
             island, complete sequence
          Length = 140499

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   taaaacaagatacataatct 183
             ||||||||||||||||||||
Sbjct: 59887 taaaacaagatacataatct 59906
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>gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, complete sequence
          Length = 206537

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   ctagagtagctgaacccaga 205
             ||||||||||||||||||||
Sbjct: 58912 ctagagtagctgaacccaga 58893
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>gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold
          Length = 288075

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  agagtagctgaacccagaga 207
            ||||||||||||||||||||
Sbjct: 4031 agagtagctgaacccagaga 4050
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>gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, complete sequence
          Length = 173058

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 6    gaacagccaaaaccaacaaa 25
            ||||||||||||||||||||
Sbjct: 9922 gaacagccaaaaccaacaaa 9941
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>gb|AC023389.13| Homo sapiens chromosome 17, clone RP11-82O19, complete sequence
          Length = 127918

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      gaacagccaaaaccaacaaa 25
              ||||||||||||||||||||
Sbjct: 101484 gaacagccaaaaccaacaaa 101503


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,442,383
Number of Sequences: 3902068
Number of extensions: 2442383
Number of successful extensions: 42645
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42557
Number of HSP's gapped (non-prelim): 88
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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