ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF296824.1|AF296824 Zea mays genetic modifier (isr) mRNA, com... 222 6e-55
2gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ... 222 6e-55
3gb|AF466202.2| Zea mays putative pol protein gene, partial cds; ... 222 6e-55
4emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4,... 206 3e-50
5emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4,... 206 3e-50
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 206 3e-50
7dbj|AK067832.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 3e-50
8ref|XM_473465.1| Oryza sativa (japonica cultivar-group), predic... 200 2e-48
9gb|AC004694.1| Homo sapiens BAC clone CTB-152H24 from 7, complet... 42 1.1
10gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
11gb|AC116500.13| Mus musculus chromosome 5, clone RP24-297N9, com... 40 4.5
12gb|AY658640.1| Synthetic construct Peudomonas aeruginosa clone F... 40 4.5
13gb|AE006695.1| Sulfolobus solfataricus P2 section 54 of 272 of t... 40 4.5
14emb|Y18930.1|SSU18930 Sulfolobus solfataricus 281 kb genomic DNA... 40 4.5
15emb|AL731643.4|OSJN00284 Oryza sativa genomic DNA, chromosome 4,... 40 4.5
16emb|AL731668.6| Mouse DNA sequence from clone RP23-430C13 on chr... 40 4.5
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
18gb|AE004472.1| Pseudomonas aeruginosa PAO1, section 33 of 529 of... 40 4.5
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
20emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4,... 40 4.5
21emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chr... 40 4.5 
>gb|AF296824.1|AF296824 Zea mays genetic modifier (isr) mRNA, complete cds
          Length = 1480

 Score =  222 bits (112), Expect = 6e-55
 Identities = 196/224 (87%)
 Strand = Plus / Minus

                                                                        
Query: 109  catcactcctcgatcacaatctccatgtccatgtcagattgtctgcccctgcgcccaaga 168
            ||||| ||||| |||||||| ||||| ||||||||||||| ||| |||||||| |||| |
Sbjct: 1218 catcattcctcaatcacaatttccatatccatgtcagattctctacccctgcgaccaata 1159

                                                                        
Query: 169  acctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagccatctcaca 228
            || || ||||| || |||||||||| |||||||| |||||| ||||| ||||||||||||
Sbjct: 1158 acttcaccattagcaagcctctgcaagtcaacaatagagagctgatcaagccatctcaca 1099

                                                                        
Query: 229  acatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgccacacacctc 288
            |||||||||||||  || || |||||||||||||| |||| |||||| ||||||||||||
Sbjct: 1098 acatggtttgctgattggagctcataggcagggtgtcggcctgcaactgccacacacctc 1039

                                                        
Query: 289  atcccagcagtatgtgcagactgcgtcgtcaagtttgagctacc 332
            ||||||||  |||||||||| | |||||||||||||||| ||||
Sbjct: 1038 atcccagcgttatgtgcagattccgtcgtcaagtttgagttacc 995
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>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
             hypothetical protein, putative NAM protein, putative
             cis-zeatin O-glucosyltransferases, putative small nuclear
             ribonucleoprotein, putative cis-zeatin
             O-glucosyltransferase, putative glutathione peroxidase,
             putative copper-exporting ATPases, putative
             serine/threonine dehydratase, and putative actin
             depolymerizing factor genes, complete cds; and
             hypothetical protein gene, partial cds
          Length = 157237

 Score =  222 bits (112), Expect = 6e-55
 Identities = 202/232 (87%)
 Strand = Plus / Plus

                                                                         
Query: 101   tgcagaaacatcactcctcgatcacaatctccatgtccatgtcagattgtctgcccctgc 160
             ||||||| ||||| |||||||||||||| ||||| ||||||||||||| ||| |||||||
Sbjct: 48028 tgcagaagcatcattcctcgatcacaatttccatatccatgtcagattctctacccctgc 48087

                                                                         
Query: 161   gcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagcc 220
             | |||| ||| || ||||| || |||||||||| |||||||| ||||| ||| || ||||
Sbjct: 48088 gaccaataacttcaccattagcaagcctctgcaagtcaacaatagagaattggtcaagcc 48147

                                                                         
Query: 221   atctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgcca 280
             |||||||||||||| ||||||| || || |||||||||||||| |||| |||||| ||||
Sbjct: 48148 atctcacaacatggcttgctgcttggagctcataggcagggtgtcggcctgcaactgcca 48207

                                                                 
Query: 281   cacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacc 332
             |||||||||||| |||  |||||||||| | |||||||||||||||| ||||
Sbjct: 48208 cacacctcatcctagcgttatgtgcagattccgtcgtcaagtttgagttacc 48259
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>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol
             precursor -orf2, putative Fourf gag/pol protein, putative
             NADP-dependent malic enzyme, putative argonaute protein,
             putative pinhead protein, putative pol protein, putative
             gag protein, putative TNP2, r1-B73 proteins, putative
             genetic modifier, putative S-receptor kinase, putative
             aldose reductase-related protein, putative glutathione
             peroxidase, putative glycerol 3-phosphate permease,
             putative response regulator, and putative 4-coumarate-CoA
             ligase-like protein genes, complete cds
          Length = 290350

 Score =  222 bits (112), Expect = 6e-55
 Identities = 196/224 (87%)
 Strand = Plus / Plus

                                                                         
Query: 109   catcactcctcgatcacaatctccatgtccatgtcagattgtctgcccctgcgcccaaga 168
             ||||| ||||| |||||||| ||||| ||||||||||||| ||| |||||||| |||| |
Sbjct: 91369 catcattcctcaatcacaatttccatatccatgtcagattctctacccctgcgaccaata 91428

                                                                         
Query: 169   acctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagccatctcaca 228
             || || ||||| || |||||||||| |||||||| |||||| ||||| ||||||||||||
Sbjct: 91429 acttcaccattagcaagcctctgcaagtcaacaatagagagctgatcaagccatctcaca 91488

                                                                         
Query: 229   acatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgccacacacctc 288
             |||||||||||||  || || |||||||||||||| |||| |||||| ||||||||||||
Sbjct: 91489 acatggtttgctgattggagctcataggcagggtgtcggcctgcaactgccacacacctc 91548

                                                         
Query: 289   atcccagcagtatgtgcagactgcgtcgtcaagtttgagctacc 332
             ||||||||  |||||||||| | |||||||||||||||| ||||
Sbjct: 91549 atcccagcgttatgtgcagattccgtcgtcaagtttgagttacc 91592
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>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17,
            complete sequence
          Length = 167269

 Score =  206 bits (104), Expect = 3e-50
 Identities = 184/211 (87%), Gaps = 6/211 (2%)
 Strand = Plus / Minus

                                                                        
Query: 104  agaaacatcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccc 157
            ||||| ||||||||||||||||||||||||||||||||||      ||||  ||||||||
Sbjct: 6231 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 6172

                                                                        
Query: 158  tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 217
            || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| |
Sbjct: 6171 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 6112

                                                                        
Query: 218  gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 277
            ||||||| ||||||||||||||||| || || |||||||||||||  |||||||||||||
Sbjct: 6111 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 6052

                                           
Query: 278  ccacacacctcatcccagcagtatgtgcaga 308
            | ||||||||||||||||||||||| |||||
Sbjct: 6051 caacacacctcatcccagcagtatgcgcaga 6021
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>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
              complete sequence
          Length = 127506

 Score =  206 bits (104), Expect = 3e-50
 Identities = 184/211 (87%), Gaps = 6/211 (2%)
 Strand = Plus / Minus

                                                                          
Query: 104    agaaacatcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccc 157
              ||||| ||||||||||||||||||||||||||||||||||      ||||  ||||||||
Sbjct: 112050 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 111991

                                                                          
Query: 158    tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 217
              || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| |
Sbjct: 111990 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 111931

                                                                          
Query: 218    gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 277
              ||||||| ||||||||||||||||| || || |||||||||||||  |||||||||||||
Sbjct: 111930 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 111871

                                             
Query: 278    ccacacacctcatcccagcagtatgtgcaga 308
              | ||||||||||||||||||||||| |||||
Sbjct: 111870 caacacacctcatcccagcagtatgcgcaga 111840
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  206 bits (104), Expect = 3e-50
 Identities = 184/211 (87%), Gaps = 6/211 (2%)
 Strand = Plus / Minus

                                                                            
Query: 104      agaaacatcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccc 157
                ||||| ||||||||||||||||||||||||||||||||||      ||||  ||||||||
Sbjct: 27843378 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 27843319

                                                                            
Query: 158      tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 217
                || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| |
Sbjct: 27843318 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 27843259

                                                                            
Query: 218      gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 277
                ||||||| ||||||||||||||||| || || |||||||||||||  |||||||||||||
Sbjct: 27843258 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 27843199

                                               
Query: 278      ccacacacctcatcccagcagtatgtgcaga 308
                | ||||||||||||||||||||||| |||||
Sbjct: 27843198 caacacacctcatcccagcagtatgcgcaga 27843168



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     caacagagagttgatcgagc 219
               ||||||||||||||||||||
Sbjct: 7635351 caacagagagttgatcgagc 7635332
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>dbj|AK067832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121O07, full
            insert sequence
          Length = 1499

 Score =  206 bits (104), Expect = 3e-50
 Identities = 184/211 (87%), Gaps = 6/211 (2%)
 Strand = Plus / Minus

                                                                        
Query: 104  agaaacatcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccc 157
            ||||| ||||||||||||||||||||||||||||||||||      ||||  ||||||||
Sbjct: 1228 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 1169

                                                                        
Query: 158  tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 217
            || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| |
Sbjct: 1168 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 1109

                                                                        
Query: 218  gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 277
            ||||||| ||||||||||||||||| || || |||||||||||||  |||||||||||||
Sbjct: 1108 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 1049

                                           
Query: 278  ccacacacctcatcccagcagtatgtgcaga 308
            | ||||||||||||||||||||||| |||||
Sbjct: 1048 caacacacctcatcccagcagtatgcgcaga 1018
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>ref|XM_473465.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1053

 Score =  200 bits (101), Expect = 2e-48
 Identities = 178/204 (87%), Gaps = 6/204 (2%)
 Strand = Plus / Minus

                                                                        
Query: 111  tcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccctgcgccc 164
            |||||||||||||||||||||||||||||||||      ||||  |||||||||| ||||
Sbjct: 1053 tcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccctgagccc 994

                                                                        
Query: 165  aagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagccatct 224
            ||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| ||||||||
Sbjct: 993  aagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaagccatct 934

                                                                        
Query: 225  cacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgccacaca 284
             ||||||||||||||||| || || |||||||||||||  |||||||||||||| |||||
Sbjct: 933  tacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccgcaacaca 874

                                    
Query: 285  cctcatcccagcagtatgtgcaga 308
            |||||||||||||||||| |||||
Sbjct: 873  cctcatcccagcagtatgcgcaga 850
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>gb|AC004694.1| Homo sapiens BAC clone CTB-152H24 from 7, complete sequence
          Length = 63749

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    cacaaaatgtaatgcagtact 59
             |||||||||||||||||||||
Sbjct: 56083 cacaaaatgtaatgcagtact 56103
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>gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0069E11, complete sequence
          Length = 136959

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   caacagagagttgatcgagc 219
             ||||||||||||||||||||
Sbjct: 82039 caacagagagttgatcgagc 82020
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>gb|AC116500.13| Mus musculus chromosome 5, clone RP24-297N9, complete sequence
          Length = 177689

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    actgaagttacaacacagtt 76
             ||||||||||||||||||||
Sbjct: 36167 actgaagttacaacacagtt 36186
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>gb|AY658640.1| Synthetic construct Peudomonas aeruginosa clone FLH034168.01F
           PA0343 gene, partial cds
          Length = 798

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 gaacctcgccattggcgagc 186
           ||||||||||||||||||||
Sbjct: 222 gaacctcgccattggcgagc 241
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>gb|AE006695.1| Sulfolobus solfataricus P2 section 54 of 272 of the complete genome
          Length = 13527

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   aggtcaacaacagagagttg 212
             ||||||||||||||||||||
Sbjct: 12823 aggtcaacaacagagagttg 12804
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>emb|Y18930.1|SSU18930 Sulfolobus solfataricus 281 kb genomic DNA fragment, strain P2
          Length = 281244

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    aggtcaacaacagagagttg 212
              ||||||||||||||||||||
Sbjct: 131778 aggtcaacaacagagagttg 131797
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>emb|AL731643.4|OSJN00284 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085C10,
             complete sequence
          Length = 202924

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   caacagagagttgatcgagc 219
             ||||||||||||||||||||
Sbjct: 20624 caacagagagttgatcgagc 20605
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>emb|AL731668.6| Mouse DNA sequence from clone RP23-430C13 on chromosome 11 no genes,
            complete sequence
          Length = 55004

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   tatattagtagtagataagt 97
            ||||||||||||||||||||
Sbjct: 9105 tatattagtagtagataagt 9124
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     caacagagagttgatcgagc 219
               ||||||||||||||||||||
Sbjct: 8403113 caacagagagttgatcgagc 8403094
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>gb|AE004472.1| Pseudomonas aeruginosa PAO1, section 33 of 529 of the complete genome
          Length = 10474

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  gaacctcgccattggcgagc 186
            ||||||||||||||||||||
Sbjct: 3308 gaacctcgccattggcgagc 3289
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     caacagagagttgatcgagc 219
               ||||||||||||||||||||
Sbjct: 8473876 caacagagagttgatcgagc 8473857
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>emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0021F22,
              complete sequence
          Length = 181498

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    caacagagagttgatcgagc 219
              ||||||||||||||||||||
Sbjct: 157824 caacagagagttgatcgagc 157805
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>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete
              sequence
          Length = 221374

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    gccacacacctcatcccagc 296
              ||||||||||||||||||||
Sbjct: 181672 gccacacacctcatcccagc 181653


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,513,354
Number of Sequences: 3902068
Number of extensions: 2513354
Number of successful extensions: 43914
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43819
Number of HSP's gapped (non-prelim): 95
length of query: 343
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 321
effective length of database: 17,147,199,772
effective search space: 5504251126812
effective search space used: 5504251126812
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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