ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSAL_HORVU (P23993) Photosystem I reaction center subunit XI, ch... 96 2e-20
2PSAL_CUCSA (Q39654) Photosystem I reaction center subunit XI, ch... 77 9e-15
3PSAL_ARATH (Q9SUI4) Photosystem I reaction center subunit XI, ch... 77 1e-14
4PSAL_SPIOL (Q41385) Photosystem I reaction center subunit XI, ch... 74 9e-14
5PSAL_SYNY3 (P37277) Photosystem I reaction center subunit XI (PS... 39 0.004
6PSAL_CYACA (Q9TM17) Photosystem I reaction center subunit XI (PS... 33 0.14
7PSAL_PORPU (P51222) Photosystem I reaction center subunit XI (PS... 33 0.14
8PSAL_GRATL (Q6B8P4) Photosystem I reaction center subunit XI (PS... 30 1.2
9PSAL_SYNEN (P25902) Photosystem I reaction center subunit XI (PS... 29 2.7
10PSAL_MASLA (O31126) Photosystem I reaction center subunit XI (PS... 29 2.7
11PSAL_SYNEL (Q8DGB4) Photosystem I reaction center subunit XI (PS... 29 2.7
12PSAL_ANAVT (P31092) Photosystem I reaction center subunit XI (PS... 28 4.5
13PSAL_ANASP (P58577) Photosystem I reaction center subunit XI (PS... 28 4.5
14PSAL_GUITH (O78469) Photosystem I reaction center subunit XI (PS... 28 5.9
15M3K12_HUMAN (Q12852) Mitogen-activated protein kinase kinase kin... 28 7.8

>PSAL_HORVU (P23993) Photosystem I reaction center subunit XI, chloroplast|
           precursor (PSI-L) (PSI subunit V)
          Length = 209

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 48/56 (85%), Positives = 48/56 (85%)
 Frame = -3

Query: 296 STAPVLTLTGRKKEADKLQTAEGWSQXXXXXXXXGVSGAVWAYFLLYVLDLPYFFK 129
           STAPVLTLTGRKKEADKLQTAEGWSQ        GVSGAVWAYFLLYVLDLPYFFK
Sbjct: 154 STAPVLTLTGRKKEADKLQTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209



to top

>PSAL_CUCSA (Q39654) Photosystem I reaction center subunit XI, chloroplast|
           precursor (PSI-L) (PSI subunit V)
          Length = 217

 Score = 77.4 bits (189), Expect = 9e-15
 Identities = 36/56 (64%), Positives = 42/56 (75%)
 Frame = -3

Query: 296 STAPVLTLTGRKKEADKLQTAEGWSQXXXXXXXXGVSGAVWAYFLLYVLDLPYFFK 129
           STAP LTLTGRKK  D LQTA+GW++        G+SG +WAYFLLYVLDLPY+ K
Sbjct: 162 STAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217



to top

>PSAL_ARATH (Q9SUI4) Photosystem I reaction center subunit XI, chloroplast|
           precursor (PSI-L) (PSI subunit V)
          Length = 219

 Score = 77.0 bits (188), Expect = 1e-14
 Identities = 36/56 (64%), Positives = 42/56 (75%)
 Frame = -3

Query: 296 STAPVLTLTGRKKEADKLQTAEGWSQXXXXXXXXGVSGAVWAYFLLYVLDLPYFFK 129
           S AP LTLTGRKK+ D+LQTA+GW++        G+SG  WAYFLLYVLDLPYF K
Sbjct: 164 SIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219



to top

>PSAL_SPIOL (Q41385) Photosystem I reaction center subunit XI, chloroplast|
           precursor (PSI-L) (PSI subunit V)
          Length = 216

 Score = 73.9 bits (180), Expect = 9e-14
 Identities = 34/56 (60%), Positives = 42/56 (75%)
 Frame = -3

Query: 296 STAPVLTLTGRKKEADKLQTAEGWSQXXXXXXXXGVSGAVWAYFLLYVLDLPYFFK 129
           S AP LTLTGRKK+ D+LQ+A+GW++        GVSG  WA FL+YVLDLPY+FK
Sbjct: 161 SIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216



to top

>PSAL_SYNY3 (P37277) Photosystem I reaction center subunit XI (PSI-L) (PSI|
           subunit V)
          Length = 157

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = -3

Query: 296 STAPVLTLTGRKKEADKLQTAEGWSQXXXXXXXXGVSGAVWAYFLL 159
           S+  ++T  G +   D LQTA+GWSQ        G+ GA  AYFLL
Sbjct: 97  SSYGLVTFQGEQGSGDTLQTADGWSQFAAGFFVGGMGGAFVAYFLL 142



to top

>PSAL_CYACA (Q9TM17) Photosystem I reaction center subunit XI (PSI-L) (PSI|
           subunit V)
          Length = 152

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = -3

Query: 251 DKLQTAEGWSQXXXXXXXXGVSGAVWAYFLL 159
           DKLQTA GW Q         V GA +AY LL
Sbjct: 108 DKLQTANGWRQLASGFLLGAVGGAGFAYILL 138



to top

>PSAL_PORPU (P51222) Photosystem I reaction center subunit XI (PSI-L) (PSI|
           subunit V)
          Length = 153

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -3

Query: 266 RKKEADKLQTAEGWSQXXXXXXXXGVSGAVWAYFLL 159
           R    D LQTAEGW Q         V G+ +AY LL
Sbjct: 103 RSDSKDPLQTAEGWGQFTAGFLVGAVGGSGFAYLLL 138



to top

>PSAL_GRATL (Q6B8P4) Photosystem I reaction center subunit XI (PSI-L) (PSI|
           subunit V)
          Length = 150

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 251 DKLQTAEGWSQXXXXXXXXGVSGAVWAYFLL 159
           D LQT EGW Q         V G+ +AY LL
Sbjct: 108 DLLQTTEGWGQFTAGFLVGAVGGSGFAYLLL 138



to top

>PSAL_SYNEN (P25902) Photosystem I reaction center subunit XI (PSI-L) (PSI|
           subunit V)
          Length = 148

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 254 ADKLQTAEGWSQXXXXXXXXGVSGAVWAYFLL 159
           +D L+T+EGWSQ         +  A  A+FLL
Sbjct: 108 SDPLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 139



to top

>PSAL_MASLA (O31126) Photosystem I reaction center subunit XI (PSI-L) (PSI|
           subunit V)
          Length = 173

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 251 DKLQTAEGWSQXXXXXXXXGVSGAVWAYFLLYVLDL 144
           +  Q++EGW+         G+ GAV AYFL   L+L
Sbjct: 131 EAFQSSEGWNNFASAFLIGGIGGAVVAYFLTSNLEL 166



to top

>PSAL_SYNEL (Q8DGB4) Photosystem I reaction center subunit XI (PSI-L) (PSI|
           subunit V)
          Length = 155

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 254 ADKLQTAEGWSQXXXXXXXXGVSGAVWAYFLL 159
           +D L+T+EGWSQ         +  A  A+FLL
Sbjct: 109 SDPLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 140



to top

>PSAL_ANAVT (P31092) Photosystem I reaction center subunit XI (PSI-L) (PSI|
           subunit V)
          Length = 172

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 251 DKLQTAEGWSQXXXXXXXXGVSGAVWAYFL 162
           D  Q+ EGW+         G+ GAV AYFL
Sbjct: 131 DAFQSKEGWNNFASAFLIGGIGGAVVAYFL 160



to top

>PSAL_ANASP (P58577) Photosystem I reaction center subunit XI (PSI-L) (PSI|
           subunit V)
          Length = 172

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 251 DKLQTAEGWSQXXXXXXXXGVSGAVWAYFL 162
           D  Q+ EGW+         G+ GAV AYFL
Sbjct: 131 DAFQSKEGWNNFASAFLIGGIGGAVVAYFL 160



to top

>PSAL_GUITH (O78469) Photosystem I reaction center subunit XI (PSI-L) (PSI|
           subunit V)
          Length = 152

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 251 DKLQTAEGWSQXXXXXXXXGVSGAVWAYFLL 159
           ++LQ+A+GW Q         + GA +AY L+
Sbjct: 108 EQLQSAKGWRQFTSGWLVGSIGGASFAYILI 138



to top

>M3K12_HUMAN (Q12852) Mitogen-activated protein kinase kinase kinase 12 (EC|
           2.7.11.25) (Mixed lineage kinase) (Leucine-zipper
           protein kinase) (ZPK) (Dual leucine zipper bearing
           kinase) (DLK) (MAPK-upstream kinase) (MUK)
          Length = 859

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/30 (53%), Positives = 16/30 (53%)
 Frame = +3

Query: 207 ASGELRPPFGGLELVGLLLASGEGEHRRGG 296
           A GE  PP G  E VGLL    EG   RGG
Sbjct: 661 AKGEPPPPVGPGEGVGLLGTGREGTSGRGG 690


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,824,911
Number of Sequences: 219361
Number of extensions: 588910
Number of successful extensions: 1212
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top