ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSTB1_VIBVY (Q7MNI7) Phosphate import ATP-binding protein pstB 1... 28 6.4
2PSTB1_VIBVU (Q8DEW5) Phosphate import ATP-binding protein pstB 1... 28 6.4
3GLNQ_BACST (P27675) Glutamine transport ATP-binding protein glnQ 28 8.4
4RR7_METGY (Q71L24) Chloroplast 30S ribosomal protein S7 28 8.4
5KCNT1_HUMAN (Q5JUK3) Potassium channel subfamily T member 1 (KCa... 28 8.4

>PSTB1_VIBVY (Q7MNI7) Phosphate import ATP-binding protein pstB 1 (EC 3.6.3.27)|
           (Phosphate-transporting ATPase 1) (ABC phosphate
           transporter 1)
          Length = 272

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
 Frame = -2

Query: 222 GAGTGSLIRCVNRCVFVLSSPKIRG-----------PCYSVRKIRRAVSFVF 100
           G G  +L+RC+NR   ++   K+ G           P   V  +RR V  VF
Sbjct: 61  GCGKSTLLRCINRMNDLVEGCKVTGSVKLYGSNVYDPSVDVATLRRRVGMVF 112



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>PSTB1_VIBVU (Q8DEW5) Phosphate import ATP-binding protein pstB 1 (EC 3.6.3.27)|
           (Phosphate-transporting ATPase 1) (ABC phosphate
           transporter 1)
          Length = 272

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
 Frame = -2

Query: 222 GAGTGSLIRCVNRCVFVLSSPKIRG-----------PCYSVRKIRRAVSFVF 100
           G G  +L+RC+NR   ++   K+ G           P   V  +RR V  VF
Sbjct: 61  GCGKSTLLRCINRMNDLVEGCKVTGSVKLYGSNVYDPSVDVATLRRRVGMVF 112



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>GLNQ_BACST (P27675) Glutamine transport ATP-binding protein glnQ|
          Length = 242

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = -2

Query: 222 GAGTGSLIRCVNRC------VFVLSSPKIRGPCYSVRKIRRAVSFVF 100
           G+G  +L+RC+NR         ++ + K+      + ++RR +  VF
Sbjct: 37  GSGKSTLVRCINRLETISSGELIVDNVKVNDKHIDINQLRRNIGMVF 83



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>RR7_METGY (Q71L24) Chloroplast 30S ribosomal protein S7|
          Length = 155

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -1

Query: 163 SENSWPLLFSAENKKGRFIRIYYCCMSSRKKKGKDRNFQ 47
           S +++ +    +NK+G+ + I +   SSRK+ G++ +F+
Sbjct: 81  SGSTYQVPIEIKNKEGKILAIRWLLESSRKRSGRNMHFK 119



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>KCNT1_HUMAN (Q5JUK3) Potassium channel subfamily T member 1 (KCa4.1)|
          Length = 1230

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 150  HEFSENSAQKHTCSHTLSSCQCQRR 224
            H  S + ++K +CSH LSSC  + R
Sbjct: 1201 HVASSSQSRKSSCSHKLSSCNPETR 1225


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,161,764
Number of Sequences: 219361
Number of extensions: 593349
Number of successful extensions: 1405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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