Clone Name | rbaet99b02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_481582.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1684 Score = 61.9 bits (31), Expect = 8e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 5 cattgaccactatcattacaaaatgatcatcacaa 39 ||||||||||||||||||||||||||||| ||||| Sbjct: 1662 cattgaccactatcattacaaaatgatcaccacaa 1628
>ref|XM_507190.1| PREDICTED Oryza sativa (japonica cultivar-group), P0005C02.108 mRNA Length = 1759 Score = 61.9 bits (31), Expect = 8e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 5 cattgaccactatcattacaaaatgatcatcacaa 39 ||||||||||||||||||||||||||||| ||||| Sbjct: 1705 cattgaccactatcattacaaaatgatcaccacaa 1671
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 61.9 bits (31), Expect = 8e-07 Identities = 34/35 (97%) Strand = Plus / Plus Query: 5 cattgaccactatcattacaaaatgatcatcacaa 39 ||||||||||||||||||||||||||||| ||||| Sbjct: 13977938 cattgaccactatcattacaaaatgatcaccacaa 13977972
>dbj|AP004554.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0005C02 Length = 62423 Score = 61.9 bits (31), Expect = 8e-07 Identities = 34/35 (97%) Strand = Plus / Plus Query: 5 cattgaccactatcattacaaaatgatcatcacaa 39 ||||||||||||||||||||||||||||| ||||| Sbjct: 32261 cattgaccactatcattacaaaatgatcaccacaa 32295
>dbj|AP004661.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0048E12 Length = 152543 Score = 61.9 bits (31), Expect = 8e-07 Identities = 34/35 (97%) Strand = Plus / Plus Query: 5 cattgaccactatcattacaaaatgatcatcacaa 39 ||||||||||||||||||||||||||||| ||||| Sbjct: 9829 cattgaccactatcattacaaaatgatcaccacaa 9863
>dbj|AK119591.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D04, full insert sequence Length = 1666 Score = 61.9 bits (31), Expect = 8e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 5 cattgaccactatcattacaaaatgatcatcacaa 39 ||||||||||||||||||||||||||||| ||||| Sbjct: 1644 cattgaccactatcattacaaaatgatcaccacaa 1610
>dbj|AK119590.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D03, full insert sequence Length = 1725 Score = 61.9 bits (31), Expect = 8e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 5 cattgaccactatcattacaaaatgatcatcacaa 39 ||||||||||||||||||||||||||||| ||||| Sbjct: 1667 cattgaccactatcattacaaaatgatcaccacaa 1633
>dbj|AK104404.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C07, full insert sequence Length = 1682 Score = 61.9 bits (31), Expect = 8e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 5 cattgaccactatcattacaaaatgatcatcacaa 39 ||||||||||||||||||||||||||||| ||||| Sbjct: 1660 cattgaccactatcattacaaaatgatcaccacaa 1626
>dbj|AK068096.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134F13, full insert sequence Length = 1759 Score = 61.9 bits (31), Expect = 8e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 5 cattgaccactatcattacaaaatgatcatcacaa 39 ||||||||||||||||||||||||||||| ||||| Sbjct: 1705 cattgaccactatcattacaaaatgatcaccacaa 1671
>gb|AC169371.2| Sorghum bicolor clone SB_BBc0127F08, complete sequence Length = 70712 Score = 52.0 bits (26), Expect = 8e-04 Identities = 32/34 (94%) Strand = Plus / Minus Query: 6 attgaccactatcattacaaaatgatcatcacaa 39 |||| ||||||||||||||||||||||| ||||| Sbjct: 28962 attggccactatcattacaaaatgatcaccacaa 28929
>gb|AY105746.1| Zea mays PCO099975 mRNA sequence Length = 1421 Score = 50.1 bits (25), Expect = 0.003 Identities = 34/37 (91%) Strand = Plus / Minus Query: 4 ccattgaccactatcattacaaaatgatcatcacaac 40 |||||| |||||| |||||||||||||||| |||||| Sbjct: 1303 ccattggccactaccattacaaaatgatcaccacaac 1267
>ref|XM_712839.1| Candida albicans SC5314 hypothetical protein (CaO19_3241), mRNA Length = 4254 Score = 48.1 bits (24), Expect = 0.012 Identities = 24/24 (100%) Strand = Plus / Plus Query: 184 cctgttcacacaccttatcaagct 207 |||||||||||||||||||||||| Sbjct: 3292 cctgttcacacaccttatcaagct 3315
>ref|XM_712773.1| Candida albicans SC5314 hypothetical protein (CaO19_10751), mRNA Length = 4254 Score = 48.1 bits (24), Expect = 0.012 Identities = 24/24 (100%) Strand = Plus / Plus Query: 184 cctgttcacacaccttatcaagct 207 |||||||||||||||||||||||| Sbjct: 3292 cctgttcacacaccttatcaagct 3315
>gb|AC158990.2| Mus musculus BAC clone RP23-416E18 from chromosome 13, complete sequence Length = 191036 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 ttcctgtcttttcccttcttt 74 ||||||||||||||||||||| Sbjct: 122740 ttcctgtcttttcccttcttt 122760
>emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chromosome 13, complete sequence Length = 220233 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 ttcctgtcttttcccttcttt 74 ||||||||||||||||||||| Sbjct: 186939 ttcctgtcttttcccttcttt 186919
>gb|AC152718.6| Mus musculus BAC clone RP24-432B3 from chromosome 9, complete sequence Length = 174264 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 tcttttcccttctttttcctt 80 ||||||||||||||||||||| Sbjct: 10726 tcttttcccttctttttcctt 10746
>emb|AL672195.9| Mouse DNA sequence from clone RP23-468E16 on chromosome 9, complete sequence Length = 182503 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 tcttttcccttctttttcctt 80 ||||||||||||||||||||| Sbjct: 101739 tcttttcccttctttttcctt 101719
>emb|AL844204.3| Mouse DNA sequence from clone RP23-189N15 on chromosome 2, complete sequence Length = 162981 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 tcttttcccttctttttcctt 80 ||||||||||||||||||||| Sbjct: 45502 tcttttcccttctttttcctt 45482
>gb|AC164094.5| Mus musculus BAC clone RP23-133F10 from chromosome 6, complete sequence Length = 216271 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 124450 cttttcccttctttttcctt 124469 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 17151 cttttcccttctttttcctt 17170
>gb|AC159431.1| Trypanosoma brucei chromosome 8 clone RPCI93-28F14, complete sequence Length = 132418 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 129069 cttttcccttctttttcctt 129050
>gb|AC119406.6| Trypanosoma brucei chromosome 8 clone RPCI93-28L1, complete sequence Length = 134874 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 23311 cttttcccttctttttcctt 23292
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 950318 cttttcccttctttttcctt 950299
>gb|AC150635.4| Bos taurus BAC CH240-448P19 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 151766 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 attacaaaatgatcatcacaacaa 42 ||||||||||||||| |||||||| Sbjct: 127137 attacaaaatgatcaccacaacaa 127160
>gb|AC121889.3| Mus musculus BAC clone RP24-146D9 from chromosome 1, complete sequence Length = 160207 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ctgtcttttcccttcttttt 76 |||||||||||||||||||| Sbjct: 120843 ctgtcttttcccttcttttt 120862
>gb|AY232206.1| Drosophila yakuba clone yak-ad_CG10472 mRNA sequence Length = 480 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 cttatcaagctgccagtgcc 216 |||||||||||||||||||| Sbjct: 421 cttatcaagctgccagtgcc 440
>gb|AC117667.9| Mus musculus chromosome 6, clone RP23-367C6, complete sequence Length = 134538 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 caacaaaaccttggaaattc 56 |||||||||||||||||||| Sbjct: 92068 caacaaaaccttggaaattc 92087
>gb|AC164408.4| Mus musculus chromosome 3, clone RP23-384A11, complete sequence Length = 202604 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 118362 cttttcccttctttttcctt 118381
>emb|AL590395.4| Human DNA sequence from clone RP11-390H11 on chromosome 6, complete sequence Length = 154747 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cattacaaaatgatcatcac 37 |||||||||||||||||||| Sbjct: 100897 cattacaaaatgatcatcac 100916
>emb|AL118523.18|HSJ1031J8 Human DNA sequence from clone RP5-1031J8 on chromosome 20 Contains a putative novel gene, STSs and GSSs, complete sequence Length = 155213 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 tcttttcccttctttttcct 79 |||||||||||||||||||| Sbjct: 142520 tcttttcccttctttttcct 142501
>emb|AL096708.34|HS1179L24 Human DNA sequence from clone RP5-1179L24 on chromosome 6q24.3-25.3 Contains the PPP1R14C gene for protein phosphatase 1 regulatory (inhibitor) subunit 14C (KEPI NY-BR-81 CPI17-like), complete sequence Length = 107104 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 ttcctgtcttttcccttctt 73 |||||||||||||||||||| Sbjct: 37619 ttcctgtcttttcccttctt 37638
>gb|AC161207.4| Mus musculus chromosome 1, clone RP23-66G23, complete sequence Length = 197037 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 ctgtcttttcccttcttttt 76 |||||||||||||||||||| Sbjct: 136128 ctgtcttttcccttcttttt 136109
>gb|AC155332.10| Mus musculus 6 BAC RP24-140J8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 202181 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 cttttcccttctttttccttgagg 84 ||||||||||||||| |||||||| Sbjct: 143209 cttttcccttcttttaccttgagg 143186
>gb|AC119840.12| Mus musculus chromosome 3, clone RP24-112E5, complete sequence Length = 206159 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 79842 cttttcccttctttttcctt 79861
>gb|AC161237.8| Mus musculus chromosome 3, clone RP23-307M9, complete sequence Length = 206004 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 118767 cttttcccttctttttcctt 118748
>gb|AF407166.1| Homo sapiens PKC-potentiated PP1 inhibitory protein (KEPI) gene, complete cds Length = 168856 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 ttcctgtcttttcccttctt 73 |||||||||||||||||||| Sbjct: 99371 ttcctgtcttttcccttctt 99390
>gb|AC158672.6| Mus musculus 6 BAC RP23-64J23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 216954 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 cttttcccttctttttccttgagg 84 ||||||||||||||| |||||||| Sbjct: 196138 cttttcccttcttttaccttgagg 196115 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 cttttcccttctttttccttgagg 84 ||||||||||||||| |||||||| Sbjct: 37224 cttttcccttcttttaccttgagg 37201
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ttcccttctttttccttgag 83 |||||||||||||||||||| Sbjct: 2511742 ttcccttctttttccttgag 2511761
>gb|AC156284.8| Mus musculus 6 BAC RP24-392D13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 182146 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 cttttcccttctttttccttgagg 84 ||||||||||||||| |||||||| Sbjct: 13332 cttttcccttcttttaccttgagg 13309
>gb|AC093884.4| Homo sapiens BAC clone RP11-660K21 from 2, complete sequence Length = 105087 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 atcattacaaaatgatcatc 35 |||||||||||||||||||| Sbjct: 34323 atcattacaaaatgatcatc 34342
>gb|AC140334.3| Mus musculus BAC clone RP23-244J7 from chromosome 6, complete sequence Length = 192598 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 142750 cttttcccttctttttcctt 142731 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 25526 cttttcccttctttttcctt 25507
>gb|AC114558.18| Mus musculus chromosome 8, clone RP23-47G19, complete sequence Length = 262311 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 139070 cttttcccttctttttcctt 139089 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 138755 cttttcccttctttttcctt 138774 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 138723 cttttcccttctttttcctt 138742
>gb|AC153855.4| Mus musculus 6 BAC RP23-175B24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183070 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 cttttcccttctttttccttgagg 84 ||||||||||||||| |||||||| Sbjct: 2580 cttttcccttcttttaccttgagg 2557
>emb|BX255949.3| Zebrafish DNA sequence from clone DKEY-76F5 in linkage group 2, complete sequence Length = 214484 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 cagcagtaataaatacgaatgaaa 113 ||||||||||||| |||||||||| Sbjct: 125553 cagcagtaataaacacgaatgaaa 125530
>gb|AC125102.4| Mus musculus BAC clone RP24-208N22 from 6, complete sequence Length = 163235 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 caacaaaaccttggaaattc 56 |||||||||||||||||||| Sbjct: 155486 caacaaaaccttggaaattc 155467
>gb|AC132606.3| Mus musculus BAC clone RP23-434H18 from 8, complete sequence Length = 215743 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cttttcccttctttttcctt 80 |||||||||||||||||||| Sbjct: 184906 cttttcccttctttttcctt 184925
>emb|AL607129.16| Mouse DNA sequence from clone RP23-120H2 on chromosome 4, complete sequence Length = 76465 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 agaactcagcacaaaaacac 182 |||||||||||||||||||| Sbjct: 44778 agaactcagcacaaaaacac 44759 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,448,514 Number of Sequences: 3902068 Number of extensions: 2448514 Number of successful extensions: 201022 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 200707 Number of HSP's gapped (non-prelim): 315 length of query: 226 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 204 effective length of database: 17,147,199,772 effective search space: 3498028753488 effective search space used: 3498028753488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)