ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 52 7e-04
2gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome... 44 0.17
3dbj|AP002803.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 0.66
4gb|AC135420.4| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
5gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
6ref|XM_693139.1| PREDICTED: Danio rerio similar to Solute carrie... 40 2.6
7ref|XM_684587.1| PREDICTED: Danio rerio similar to Solute carrie... 40 2.6
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
9emb|BX649578.14| Zebrafish DNA sequence from clone CH211-196L7 i... 40 2.6
10dbj|AP005231.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 2.6

>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                         
Query: 176     gcgtcgtcgccacggtggctgcggcc 201
               ||||||||||||||||||||||||||
Sbjct: 1749181 gcgtcgtcgccacggtggctgcggcc 1749156



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>gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome 13, complete sequence
          Length = 168858

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 15     aatgagatatctgtataaatggattg 40
              ||||||||||||||| ||||||||||
Sbjct: 140650 aatgagatatctgtacaaatggattg 140625



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>dbj|AP002803.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-882I15, complete
              sequence
          Length = 125000

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     acaaatgagatatctgtataa 32
              |||||||||||||||||||||
Sbjct: 115246 acaaatgagatatctgtataa 115266



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>gb|AC135420.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
           OSJNBa0060G17, complete sequence
          Length = 174949

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 177 cgtcgtcgccacggtggctg 196
           ||||||||||||||||||||
Sbjct: 854 cgtcgtcgccacggtggctg 873



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>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0042F15, complete sequence
          Length = 162959

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   cgtcgtcgccacggtggctg 196
             ||||||||||||||||||||
Sbjct: 96039 cgtcgtcgccacggtggctg 96058



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>ref|XM_693139.1| PREDICTED: Danio rerio similar to Solute carrier organic anion
           transporter family, member 3a1 (LOC569735), mRNA
          Length = 1626

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  gcagcaaagccagcaacaac 92
           ||||||||||||||||||||
Sbjct: 578 gcagcaaagccagcaacaac 559



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>ref|XM_684587.1| PREDICTED: Danio rerio similar to Solute carrier organic anion
            transporter family, member 3A1 (Solute carrier family 21,
            member 11) (Sodium-independent organic anion transporter
            D) (Organic anion transporting polypeptide D) (OATP-D)
            (Prostaglandin transporter subtype 2)... (LOC561180),
            partial mRNA
          Length = 1573

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 73   gcagcaaagccagcaacaac 92
            ||||||||||||||||||||
Sbjct: 1508 gcagcaaagccagcaacaac 1489



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 177     cgtcgtcgccacggtggctg 196
               ||||||||||||||||||||
Sbjct: 7911264 cgtcgtcgccacggtggctg 7911283



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>emb|BX649578.14| Zebrafish DNA sequence from clone CH211-196L7 in linkage group 18,
             complete sequence
          Length = 211922

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    gcagcaaagccagcaacaac 92
             ||||||||||||||||||||
Sbjct: 37065 gcagcaaagccagcaacaac 37046



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>dbj|AP005231.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-78G22, complete
             sequence
          Length = 102488

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    caggcagcaaagccagcaac 89
             ||||||||||||||||||||
Sbjct: 24733 caggcagcaaagccagcaac 24714


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,540,946
Number of Sequences: 3902068
Number of extensions: 1540946
Number of successful extensions: 107440
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107358
Number of HSP's gapped (non-prelim): 82
length of query: 207
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 185
effective length of database: 17,147,199,772
effective search space: 3172231957820
effective search space used: 3172231957820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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