Clone Name | rbaet99a11 |
---|---|
Clone Library Name | barley_pub |
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 52.0 bits (26), Expect = 7e-04 Identities = 26/26 (100%) Strand = Plus / Minus Query: 176 gcgtcgtcgccacggtggctgcggcc 201 |||||||||||||||||||||||||| Sbjct: 1749181 gcgtcgtcgccacggtggctgcggcc 1749156
>gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome 13, complete sequence Length = 168858 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Minus Query: 15 aatgagatatctgtataaatggattg 40 ||||||||||||||| |||||||||| Sbjct: 140650 aatgagatatctgtacaaatggattg 140625
>dbj|AP002803.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-882I15, complete sequence Length = 125000 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 acaaatgagatatctgtataa 32 ||||||||||||||||||||| Sbjct: 115246 acaaatgagatatctgtataa 115266
>gb|AC135420.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0060G17, complete sequence Length = 174949 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cgtcgtcgccacggtggctg 196 |||||||||||||||||||| Sbjct: 854 cgtcgtcgccacggtggctg 873
>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complete sequence Length = 162959 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cgtcgtcgccacggtggctg 196 |||||||||||||||||||| Sbjct: 96039 cgtcgtcgccacggtggctg 96058
>ref|XM_693139.1| PREDICTED: Danio rerio similar to Solute carrier organic anion transporter family, member 3a1 (LOC569735), mRNA Length = 1626 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 gcagcaaagccagcaacaac 92 |||||||||||||||||||| Sbjct: 578 gcagcaaagccagcaacaac 559
>ref|XM_684587.1| PREDICTED: Danio rerio similar to Solute carrier organic anion transporter family, member 3A1 (Solute carrier family 21, member 11) (Sodium-independent organic anion transporter D) (Organic anion transporting polypeptide D) (OATP-D) (Prostaglandin transporter subtype 2)... (LOC561180), partial mRNA Length = 1573 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 gcagcaaagccagcaacaac 92 |||||||||||||||||||| Sbjct: 1508 gcagcaaagccagcaacaac 1489
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cgtcgtcgccacggtggctg 196 |||||||||||||||||||| Sbjct: 7911264 cgtcgtcgccacggtggctg 7911283
>emb|BX649578.14| Zebrafish DNA sequence from clone CH211-196L7 in linkage group 18, complete sequence Length = 211922 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 gcagcaaagccagcaacaac 92 |||||||||||||||||||| Sbjct: 37065 gcagcaaagccagcaacaac 37046
>dbj|AP005231.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-78G22, complete sequence Length = 102488 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 caggcagcaaagccagcaac 89 |||||||||||||||||||| Sbjct: 24733 caggcagcaaagccagcaac 24714 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,540,946 Number of Sequences: 3902068 Number of extensions: 1540946 Number of successful extensions: 107440 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107358 Number of HSP's gapped (non-prelim): 82 length of query: 207 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 185 effective length of database: 17,147,199,772 effective search space: 3172231957820 effective search space used: 3172231957820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)