>PSNA_ARATH (O64668) Presenilin-like protein At1g08700|
          Length = 453

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 178 IVYQVLVYTSTVHNCIYIYICMYTRVSCGVGCVAFVLTVMN 56
           I Y VLV  + +++ + +Y C Y  +  G+GC   +L+V N
Sbjct: 376 IFYSVLVGRAAMYDLMTVYAC-YLAIISGLGCTLILLSVYN 415

>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3|
          Length = 465

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -3

Query: 310 SYVWMPEVAPHQGKFVYGICYVACV---IYVCMAG*LRCGAADKHCIIVYQVLVYTSTVH 140
           S+  +P+   +    +  +C   CV   +YVCM         +  C  VY  ++ ++ V 
Sbjct: 354 SFQSVPQACWYLCSILSSVCVCVCVCVCMYVCMC------VMESAC--VYVCVMESACVC 405

Query: 139 NCIYIYICMYTRV 101
            C+ +Y+C+Y+ V
Sbjct: 406 VCMCVYVCVYSGV 418

>EFTS_SYMTH (Q67PB6) Elongation factor Ts (EF-Ts)|
          Length = 304

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 128 VYAIMHGTSIY*YLIHNYTMFVRSSTPKLASHAYIDYTCHITYSVYELTLMRCNLRHPYI 307
           V+A +HG      LI      + ++TP++A+H  ++  CH      EL L   ++R  Y+
Sbjct: 148 VHAYIHGDGRVGVLIE-----LTTATPEVAAHPEVEALCH------ELALQIASMRAQYV 196

Query: 308 R 310
           R
Sbjct: 197 R 197

>PCDA9_PANTR (Q5DRE3) Protocadherin alpha 9 precursor (PCDH-alpha9)|
          Length = 950

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = +3

Query: 93  PQLTRVYIHIYMYMQLCTV---LVYTST*YTIIQCLSAAP 203
           P++T V +++Y+ + +C V   LV T   YT+++C SA P
Sbjct: 689 PEVTLVDVNVYLIIAICAVSSLLVLTLLLYTVLRC-SAMP 727

>PCDA9_HUMAN (Q9Y5H5) Protocadherin alpha 9 precursor (PCDH-alpha9)|
          Length = 950

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = +3

Query: 93  PQLTRVYIHIYMYMQLCTV---LVYTST*YTIIQCLSAAP 203
           P++T V +++Y+ + +C V   LV T   YT+++C SA P
Sbjct: 689 PEVTLVDVNVYLIIAICAVSSLLVLTLLLYTVLRC-SAMP 727

>RPOA_EAVBU (P19811) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
           Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1
           papain-like cysteine proteinase (EC 3.4.22.-) (PCP);
           Nsp2 cysteine proteinase (EC 3.4.22.-) (CP2) (CP);
           Nonstructural protein
          Length = 3175

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -3

Query: 274 GKFVYGICYVACVI---YVCMAG*LRCGAADKHCIIVYQVLVYTSTVHNC 134
           G ++YGICY   V+   + C+      G  D  C  V+ V V T T  +C
Sbjct: 831 GGWIYGICYFVLVVVSTFTCLPIKCGIGTRDPFCRRVFSVPV-TKTQEHC 879

>ARN_BPT4 (P39510) Anti-restriction endonuclease (Anti-rgl nuclease)|
          Length = 92

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 175 QLYNVCPQLHTEVSQPCIHRLHMPHNIFRIRTYLD 279
           +LY   P L+  +    +  LH+ +N F I TY D
Sbjct: 20  KLYKFLPNLYHSIVNELVEELHLENNDFLIGTYKD 54

>MC5R_HUMAN (P33032) Melanocortin receptor 5 (MC5-R) (MC-2)|
          Length = 325

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 19  APYTLHITITLYCS*LLKRMLHTQHHNSHVYTYIYICICN 138
           AP+ LH+T+ L C     + L+     SH   Y+ + +CN
Sbjct: 252 APFFLHLTLMLSC----PQNLYCSRFMSHFNMYLILIMCN 287

>HUNB_SCICO (Q01790) Protein hunchback (Fragment)|
          Length = 50

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 67  LKRMLHTQHHNSHVYTYIYICI-CNYA 144
           + R + T H  SH  TY Y C+ CNYA
Sbjct: 21  VNRSMLTSHMKSHSNTYPYRCLDCNYA 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,794,782
Number of Sequences: 219361
Number of extensions: 1301708
Number of successful extensions: 3103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3100
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)