ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit... 377 e-102
2ref|NM_184976.1| Oryza sativa (japonica cultivar-group), mRNA 62 7e-07
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 7e-07
4gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 geno... 62 7e-07
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 7e-07
6dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
7dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
8dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
9gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit prec... 62 7e-07
10gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's H... 40 2.6
11emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chr... 40 2.6
12gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, co... 40 2.6
13gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 2.6 
>gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit precursor mRNA,
           complete cds
          Length = 990

 Score =  377 bits (190), Expect = e-102
 Identities = 202/206 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagagaacacaatagttatacaggatggggttcagtttcttaaatacaagagaggttc 60
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 940 aagagagaacacaatagttatacaagattgggttcagtttcttaaatacaagagaggttc 881

                                                                       
Query: 61  catttctccatgatcctatcagctcctacaccaagcccacacagatcgacaccacaagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 catttctccatgatcctatcagctcctacaccaagcccacacagatcgacaccacaagcc 821

                                                                       
Query: 121 ctcatcctccgttgcccatctgacttgggaccgactagccaaccacgcacgcatggcagc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ctcatcctccgctgcccatctgacttgggaccgactagccaaccacgcacgcatggcagc 761

                                     
Query: 181 tagttagtagccgatgtcggcgtcgt 206
           || |||||||||||||||||||||||
Sbjct: 760 tacttagtagccgatgtcggcgtcgt 735
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>ref|NM_184976.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1038

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 38  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 92
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 921 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 867
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 38       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 92
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 31969219 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 31969273
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>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete
             sequence
          Length = 144306

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                    
Query: 38    tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 92
             |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 61171 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 61225
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 38       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 92
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 32059731 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 32059785
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>dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N02, full
           insert sequence
          Length = 967

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 38  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 92
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 890 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 836
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>dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full
           insert sequence
          Length = 997

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 38  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 92
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 920 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 866
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>dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C12, full
           insert sequence
          Length = 990

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 38  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 92
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 913 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 859
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>gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit precursor (PSI-F) mRNA,
           complete cds
          Length = 996

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 38  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 92
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 901 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 847
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>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 230137

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    tcttaaatacaagagaggtt 59
             ||||||||||||||||||||
Sbjct: 82654 tcttaaatacaagagaggtt 82673
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>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete
              sequence
          Length = 173580

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 62     atttctccatgatcctatcagctcctac 89
              ||||||||||||||| |||| |||||||
Sbjct: 156375 atttctccatgatccaatcacctcctac 156348
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>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence
          Length = 167258

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    ggttcagtttcttaaataca 50
             ||||||||||||||||||||
Sbjct: 17437 ggttcagtttcttaaataca 17456
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     gagaggttccatttctccat 71
              ||||||||||||||||||||
Sbjct: 418732 gagaggttccatttctccat 418713


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,584,038
Number of Sequences: 3902068
Number of extensions: 1584038
Number of successful extensions: 101242
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101146
Number of HSP's gapped (non-prelim): 96
length of query: 206
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 184
effective length of database: 17,147,199,772
effective search space: 3155084758048
effective search space used: 3155084758048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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