ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet98h05 |
|---|---|
| Clone Library Name | barley_pub |
>CPN2_MOUSE (Q9DBB9) Carboxypeptidase N subunit 2 precursor (Carboxypeptidase N| polypeptide 2) (Carboxypeptidase N 83 kDa chain) (Carboxypeptidase N regulatory subunit) (Carboxypeptidase N large subunit) Length = 547 Score = 32.3 bits (72), Expect = 0.28 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = +2 Query: 152 SVLTLAAMTSPSAINLSLASGTEAAGLSDFCAPVSLASITKDIPPS-TLLMHLRAMTDTL 328 S+L LA +T P + G + G FC+ LA I DIPP T ++ + T+ Sbjct: 11 SLLLLARLTQPCPV------GCDCFGREVFCSDEQLADIPPDIPPHITDIVFVETAFTTV 64 Query: 329 KTGAGMTLPRRNSIPF 376 +T A P + F Sbjct: 65 RTRAFSGSPNLTKVVF 80
>LOLA4_DROME (Q867Z4) Longitudinals lacking protein, isoforms F/I/K/T| Length = 970 Score = 30.0 bits (66), Expect = 1.4 Identities = 9/30 (30%), Positives = 18/30 (60%) Frame = +1 Query: 262 EHHKGHPTKHVVDAPESNDGHLEDRSRHDI 351 EHH+ H T H+ + P+++ H + + H + Sbjct: 612 EHHQQHQTIHIEEVPQTSQQHHQQQHHHQL 641
>LRC3B_MOUSE (Q8VCH9) Leucine-rich repeat-containing protein 3B precursor| (Leucine-rich repeat protein LRP15) Length = 259 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = +2 Query: 215 TEAAGLSDFCAPVSLASITKDIPPSTLLMHL 307 + + GL+ C+ +L I +D+PP T+L++L Sbjct: 41 SSSGGLNVTCSNANLKEIPRDLPPETVLLYL 71
>LRC3B_HUMAN (Q96PB8) Leucine-rich repeat-containing protein 3B precursor| (Leucine-rich repeat protein LRP15) Length = 259 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = +2 Query: 215 TEAAGLSDFCAPVSLASITKDIPPSTLLMHL 307 + + GL+ C+ +L I +D+PP T+L++L Sbjct: 41 SSSGGLNVTCSNANLKEIPRDLPPETVLLYL 71
>MASS1_MOUSE (Q8VHN7) Monogenic audiogenic seizure susceptibility protein 1| precursor (Very large G-protein coupled receptor 1) (Neurepin) Length = 6298 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +2 Query: 179 SPSAINLSLASGTEAAGLSDFCAPVSLASITKDIPPSTLLMHLRAMTDTLKTGAGMTLP 355 SP +++ ASGT AP+SL D+P L + T++ GA ++ P Sbjct: 444 SPVTADITPASGTLQFAQGQMLAPISLVVFDDDLPEEAEAYLLTILPHTIQGGAEVSEP 502
>P210L_HUMAN (Q5VU65) Nuclear pore membrane glycoprotein 210-like precursor| (Nucleoporin 210 kDa-like) Length = 1888 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +2 Query: 185 SAINLSLASGTEAAGLSDFCAPVSLASITKDIPPSTLLMHLRAMTDTL 328 + L + +G L FC P +ITK + P+TL++ ++TL Sbjct: 1577 TVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLMLCHVQFSNTL 1624
>MGR1_RAT (P23385) Metabotropic glutamate receptor 1 precursor (mGluR1)| Length = 1199 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = +1 Query: 109 PLTYLPSPISKSLALSANISSNDIALCYQSLLGLWNRSCRLI----*FLCTREP 258 P T + P + S L + A+CY +L+ NR R++ +CTR+P Sbjct: 645 PFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILAGSKKKICTRKP 698
>MGR1_MOUSE (P97772) Metabotropic glutamate receptor 1 precursor (mGluR1)| Length = 1199 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = +1 Query: 109 PLTYLPSPISKSLALSANISSNDIALCYQSLLGLWNRSCRLI----*FLCTREP 258 P T + P + S L + A+CY +L+ NR R++ +CTR+P Sbjct: 645 PFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILAGSKKKICTRKP 698
>MGR1_HUMAN (Q13255) Metabotropic glutamate receptor 1 precursor (mGluR1)| Length = 1194 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = +1 Query: 109 PLTYLPSPISKSLALSANISSNDIALCYQSLLGLWNRSCRLI----*FLCTREP 258 P T + P + S L + A+CY +L+ NR R++ +CTR+P Sbjct: 645 PFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILAGSKKKICTRKP 698
>YDZ7_SCHPO (O13714) Hypothetical membrane protein C14C4.07 in chromosome I| Length = 644 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 187 CYQSLLGLWNRSCRLI*FLCTREPCEHHK 273 C + L+ LW RS LCT E CE H+ Sbjct: 360 CLEPLIILWPRS------LCTEESCEFHQ 382
>STNB_DROME (Q24212) Protein stoned-B (StonedB) (Stn-B)| Length = 1262 Score = 27.7 bits (60), Expect = 7.0 Identities = 25/90 (27%), Positives = 36/90 (40%) Frame = +2 Query: 38 HHILQISWLCPRFSK*GFGPCTACP*HTYPLLYRNHLPSVLTLAAMTSPSAINLSLASGT 217 HH I W CPR K G G T T+ L+ R L S + + +P A T Sbjct: 1127 HHHRAIVWRCPRLPKEGQGAYT-----THQLVCRMALTSYDQIPSELAPYAFVEFTMPAT 1181 Query: 218 EAAGLSDFCAPVSLASITKDIPPSTLLMHL 307 + + + VS+ D PP + +L Sbjct: 1182 QVSHTT--VRSVSVQDSDGDEPPEKYVRYL 1209
>HPS6_MOUSE (Q8BLY7) Hermansky-Pudlak syndrome 6 protein homolog (Ruby-eye| protein) (Ru) Length = 805 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/28 (60%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = +2 Query: 233 SDFCAPVSLASITKD-IPPSTLLMHLRA 313 S F AP +LASI + +PPSTLL LRA Sbjct: 430 SMFRAPQALASILQGHLPPSTLLTTLRA 457
>NOTCH_DROME (P07207) Neurogenic locus Notch protein precursor| Length = 2703 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -2 Query: 361 PSWQCHAGSGLQGVRHCSQVHQQRAWWDVLCDARKAHGCTE 239 P W + GSG R+ + + QQRA +CD R GCTE Sbjct: 1458 PGW--NGGSGSGNDRYAADLEQQRA----MCDKR---GCTE 1489
>CR2_HORVU (P23252) Cold-regulated protein 2 (Fragment)| Length = 202 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +1 Query: 277 HPTKHVVDAPESNDGHLEDRSRHDIAKKELDP 372 HP + + S GHL D+ R++I K++LDP Sbjct: 3 HPISPYIYSLSSKFGHLADKDRNEI-KEQLDP 33
>Y4JA_RHISN (P55501) Hypothetical 57.2 kDa protein y4jA/y4nE/y4sE| Length = 504 Score = 27.7 bits (60), Expect = 7.0 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 6/103 (5%) Frame = +1 Query: 52 NFLAVSKIQQMRLWAMHGMPLTYLPSPISKSLALSANISSNDIALCYQSLLGLWNRSCRL 231 +F+A+++ Q LW++ G PL + +S +LSA + D + + L NR Sbjct: 177 SFVALAEGLQNALWSVGGSPLYH------RSDSLSAAFRNLDA----DAKVDLTNR---- 222 Query: 232 I*FLCTREPCEHHKGHPTK------HVVDAPESNDGHLEDRSR 342 E C H++ PT+ H + ES+ GHL++ R Sbjct: 223 -----YEELCAHYRMTPTRNNKGVAHENGSIESSHGHLKNAVR 260
>UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (EC 3.1.2.15)| (Ubiquitin thioesterase 42) (Ubiquitin-specific-processing protease 42) (Deubiquitinating enzyme 42) Length = 1325 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +1 Query: 262 EHHKGHPTKHVVDAPESNDGHLEDRSRHDIAKKELDPIQA 381 EH G K D+ E++D H+E ++R K L+ +A Sbjct: 1153 EHENGKSRKRRHDSVENSDSHVEKKARRSEQKDPLEEPKA 1192
>VE2_HPV44 (Q80916) Regulatory protein E2| Length = 377 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +2 Query: 227 GLSDFCAPVSLASITKDIPPSTLLMHLRAMTDTLKTGAGMTLP 355 G S C+P S++S +D+ + H + T T A TLP Sbjct: 189 GSSIICSPASISSTVQDVSIAGPASHSSSSTTTTLAQASSTLP 231
>LEU3_PROMM (Q7V842) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 357 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/69 (27%), Positives = 30/69 (43%) Frame = -3 Query: 360 LLGNVMPAPVFKVSVIALRCINNVLGGMSFVMLARLTGAQKSDKPAASVPEAKERLIAEG 181 L N+ P + + A NV+ G+ +++ LTG +P K R+ A+G Sbjct: 102 LFANLRPVTILPALIDASSLKANVIKGVDLMVVRELTGGIYFGQP-------KGRIEADG 154 Query: 180 DVIAANVST 154 D A N T Sbjct: 155 DERAFNTMT 163 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,269,366 Number of Sequences: 219361 Number of extensions: 1117325 Number of successful extensions: 3233 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3232 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
