ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
2emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4,... 64 4e-07
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
4dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
5dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
6dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
7ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predic... 60 6e-06
8gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein... 48 0.022
9gb|BT016583.1| Zea mays clone Contig416 mRNA sequence 46 0.086
10gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds 46 0.086
11gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein... 46 0.086
12gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrins... 46 0.086
13gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, comp... 46 0.086
14gb|AY109332.1| Zea mays CL502_5 mRNA sequence 46 0.086
15gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Can... 44 0.34
16dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA ... 44 0.34
17emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chr... 42 1.3
18gb|AC106834.9| Mus musculus chromosome 19, clone RP24-132H7, com... 40 5.3
19gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, c... 40 5.3
20gb|AC011352.6| Homo sapiens chromosome 5 clone CTC-327F10, compl... 40 5.3
21emb|AL512424.14| Human DNA sequence from clone RP11-453E2 on chr... 40 5.3
22emb|AL031119.1|HS28C20 Human DNA sequence from clone RP1-28C20 o... 40 5.3
23gb|AC011424.4| Homo sapiens chromosome 5 clone P1_1242F12, compl... 40 5.3
24gb|AC012368.6| Homo sapiens BAC clone RP11-547M24 from 2, comple... 40 5.3
25emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in... 40 5.3
26emb|CR847890.19| Zebrafish DNA sequence from clone DKEYP-70H9 in... 40 5.3
27emb|BX005274.11| Zebrafish DNA sequence from clone DKEY-77B9 in ... 40 5.3
28gb|DQ306260.1| Rhodococcus sp. T104 p-cumate-degrading gene clus... 40 5.3
29emb|CT030247.6| Mouse DNA sequence from clone RP23-340G24 on chr... 40 5.3
30gb|AC002209.1|AC002209 Homo sapiens (subclone 2_e10 from P1 H31)... 40 5.3
31emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on ch... 40 5.3

>dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B01, full
           insert sequence
          Length = 1067

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                               
Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccg 396
           |||||||||||  ||||||||||||||||||| |||||||||||||| ||||
Sbjct: 837 gctcagttgctggggctgctccggaaggagcccagcgccttgatggctgccg 786



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>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06,
             complete sequence
          Length = 127420

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 345   gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccg 396
             |||||||||||  || |||||||||||||||| |||||||||||||| ||||
Sbjct: 90998 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccg 91049



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                   
Query: 345     gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccg 396
               |||||||||||  || |||||||||||||||| |||||||||||||| ||||
Sbjct: 8906689 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccg 8906740



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>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full
           insert sequence
          Length = 1308

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccg 396
           |||||||||||  || |||||||||||||||| |||||||||||||| ||||
Sbjct: 950 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccg 899



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>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full
           insert sequence
          Length = 1309

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccg 396
           |||||||||||  || |||||||||||||||| |||||||||||||| ||||
Sbjct: 944 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccg 893



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>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full
           insert sequence
          Length = 1296

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccg 396
           |||||||||||  || |||||||||||||||| |||||||||||||| ||||
Sbjct: 938 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccg 887



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>ref|XM_475029.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 849

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 347 tcagttgctccggctgctccggaaggagccgagcgccttgatggccgccg 396
           |||||||||  || |||||||||||||||| |||||||||||||| ||||
Sbjct: 849 tcagttgctggggttgctccggaaggagcccagcgccttgatggctgccg 800



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>gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein ZmPIP2-1 mRNA, complete
           cds
          Length = 1171

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 361 tgctccggaaggagccgagcgccttgatggcc 392
           |||||| |||||||||||| ||||||||||||
Sbjct: 937 tgctcctgaaggagccgagggccttgatggcc 906



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>gb|BT016583.1| Zea mays clone Contig416 mRNA sequence
          Length = 1348

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 361 tgctccggaaggagccgagcgccttgatggc 391
           |||||| |||||||||||| |||||||||||
Sbjct: 918 tgctcctgaaggagccgagggccttgatggc 888



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>gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds
          Length = 1133

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 361 tgctccggaaggagccgagcgccttgatggc 391
           |||||| |||||||||||| |||||||||||
Sbjct: 866 tgctcctgaaggagccgagggccttgatggc 836



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>gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein ZmPIP2-2 mRNA, complete
           cds
          Length = 1268

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 361 tgctccggaaggagccgagcgccttgatggc 391
           |||||| |||||||||||| |||||||||||
Sbjct: 990 tgctcctgaaggagccgagagccttgatggc 960



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>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA,
           complete cds
          Length = 1283

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 361 tgctccggaaggagccgagcgccttgatggc 391
           |||||| |||||||||||| |||||||||||
Sbjct: 939 tgctcctgaaggagccgagggccttgatggc 909



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>gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, complete cds
          Length = 1328

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 361 tgctccggaaggagccgagcgccttgatggc 391
           |||||| |||||||||||| |||||||||||
Sbjct: 962 tgctcctgaaggagccgagggccttgatggc 932



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>gb|AY109332.1| Zea mays CL502_5 mRNA sequence
          Length = 1969

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 361  tgctccggaaggagccgagcgccttgatggc 391
            |||||| |||||||||||| |||||||||||
Sbjct: 1640 tgctcctgaaggagccgagagccttgatggc 1610



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>gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159902

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 190   actcacatgcatgcacagacac 211
             ||||||||||||||||||||||
Sbjct: 66966 actcacatgcatgcacagacac 66987



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>dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA for water channel
           protein, partial cds
          Length = 880

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 361 tgctccggaaggagccgagcgccttgatgg 390
           |||||| |||||||||||| ||||||||||
Sbjct: 538 tgctcctgaaggagccgagggccttgatgg 509



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>emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chromosome 11, complete
             sequence
          Length = 201673

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   tcacatgcatgcacagacact 212
             |||||||||||||||||||||
Sbjct: 42516 tcacatgcatgcacagacact 42536



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>gb|AC106834.9| Mus musculus chromosome 19, clone RP24-132H7, complete sequence
          Length = 177277

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 193    cacatgcatgcacagacactgaac 216
              |||||||||||||| |||||||||
Sbjct: 133853 cacatgcatgcacacacactgaac 133830



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>gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, complete sequence
          Length = 245390

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 193   cacatgcatgcacagacactgaac 216
             |||||||||||||| |||||||||
Sbjct: 46326 cacatgcatgcacacacactgaac 46303



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>gb|AC011352.6| Homo sapiens chromosome 5 clone CTC-327F10, complete sequence
          Length = 166644

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 193   cacatgcatgcacagacactgaac 216
             |||||||||||||| |||||||||
Sbjct: 86180 cacatgcatgcacacacactgaac 86203



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>emb|AL512424.14| Human DNA sequence from clone RP11-453E2 on chromosome 10 Contains the
             5' end of the SLIT1 gene for slit homolog 1 (Drosophila),
             a novel gene and a CpG island, complete sequence
          Length = 172510

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   tggaggagcagtactgccaa 254
             ||||||||||||||||||||
Sbjct: 39310 tggaggagcagtactgccaa 39329



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>emb|AL031119.1|HS28C20 Human DNA sequence from clone RP1-28C20 on chromosome 6q24 Contains the
              3' end of a variant of the EPM2A gene for progressive
              myoclonus type 2 epilepsy (Lafora disease) protein
              (laforin) and a BTB/POZ domain zinc finger protein
              pseudogene, complete sequence
          Length = 115835

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    tgcatgcacagacactgaac 216
              ||||||||||||||||||||
Sbjct: 106284 tgcatgcacagacactgaac 106265



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>gb|AC011424.4| Homo sapiens chromosome 5 clone P1_1242F12, complete sequence
          Length = 84991

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    aataaattaataattcatgctcca 33
             |||| |||||||||||||||||||
Sbjct: 49447 aatagattaataattcatgctcca 49424



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>gb|AC012368.6| Homo sapiens BAC clone RP11-547M24 from 2, complete sequence
          Length = 196206

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    cacatgcatgcacagacact 212
              ||||||||||||||||||||
Sbjct: 179733 cacatgcatgcacagacact 179714



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>emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in linkage group 14,
              complete sequence
          Length = 179663

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     cggttttacaggttcaatcc 77
              ||||||||||||||||||||
Sbjct: 113082 cggttttacaggttcaatcc 113101



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>emb|CR847890.19| Zebrafish DNA sequence from clone DKEYP-70H9 in linkage group 14,
             complete sequence
          Length = 217550

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     acaataaattaataattcat 27
             ||||||||||||||||||||
Sbjct: 64381 acaataaattaataattcat 64400



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>emb|BX005274.11| Zebrafish DNA sequence from clone DKEY-77B9 in linkage group 19,
             complete sequence
          Length = 165012

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   gttgcattaaattattggcc 339
             ||||||||||||||||||||
Sbjct: 80678 gttgcattaaattattggcc 80697



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>gb|DQ306260.1| Rhodococcus sp. T104 p-cumate-degrading gene cluster, complete sequence
          Length = 42397

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   ggccgaatgggcacgatgga 238
             ||||||||||||||||||||
Sbjct: 11933 ggccgaatgggcacgatgga 11914



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>emb|CT030247.6| Mouse DNA sequence from clone RP23-340G24 on chromosome 9, complete
              sequence
          Length = 218753

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      cacacaataaattaataatt 24
              ||||||||||||||||||||
Sbjct: 208348 cacacaataaattaataatt 208329



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>gb|AC002209.1|AC002209 Homo sapiens (subclone 2_e10 from P1 H31) DNA sequence, complete
            sequence
          Length = 4858

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 10   aataaattaataattcatgctcca 33
            |||| |||||||||||||||||||
Sbjct: 4251 aatagattaataattcatgctcca 4274



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>emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on chromosome 2, complete
             sequence
          Length = 147002

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     acacaataaattaataattc 25
             ||||||||||||||||||||
Sbjct: 83233 acacaataaattaataattc 83214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,971,886
Number of Sequences: 3902068
Number of extensions: 2971886
Number of successful extensions: 67439
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67363
Number of HSP's gapped (non-prelim): 76
length of query: 396
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 374
effective length of database: 17,147,199,772
effective search space: 6413052714728
effective search space used: 6413052714728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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