ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AB19A_PRUPE (Q9ZRA4) Auxin-binding protein ABP19a precursor 45 4e-05
2GL33_ARATH (P94072) Germin-like protein subfamily 3 member 3 pre... 44 8e-05
3ABP20_PRUPE (O04011) Auxin-binding protein ABP20 precursor 44 1e-04
4GLP1_SINAL (P45854) Germin-like protein 1 precursor 42 3e-04
5GL31_ARATH (P94040) Germin-like protein subfamily 3 member 1 pre... 42 3e-04
6AB19B_PRUPE (O04012) Auxin-binding protein ABP19b precursor 38 0.005
7GLP1_BRANA (P46271) Germin-like protein 1 precursor 37 0.016

>AB19A_PRUPE (Q9ZRA4) Auxin-binding protein ABP19a precursor|
          Length = 209

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = -2

Query: 331 PNPGLQITDYALFANNLPSAVVEKVTFLDDAQ 236
           P+PGLQI D+ALF N+LP+ ++ + TFLD AQ
Sbjct: 166 PSPGLQILDFALFKNDLPTELIAQTTFLDAAQ 197



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>GL33_ARATH (P94072) Germin-like protein subfamily 3 member 3 precursor|
           (AtGER3) (AtGLP2)
          Length = 211

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 20/31 (64%), Positives = 25/31 (80%)
 Frame = -2

Query: 328 NPGLQITDYALFANNLPSAVVEKVTFLDDAQ 236
           +PGLQI  +ALFAN+LPS +VE  TFL DA+
Sbjct: 169 SPGLQILPFALFANDLPSELVEATTFLSDAE 199



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>ABP20_PRUPE (O04011) Auxin-binding protein ABP20 precursor|
          Length = 214

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = -2

Query: 328 NPGLQITDYALFANNLPSAVVEKVTFLDDAQ 236
           +PGLQI D+ALF N+LP+ V+ + TFLD AQ
Sbjct: 172 SPGLQILDFALFKNDLPTEVIAQTTFLDAAQ 202



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>GLP1_SINAL (P45854) Germin-like protein 1 precursor|
          Length = 211

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = -2

Query: 328 NPGLQITDYALFANNLPSAVVEKVTFLDDAQ 236
           +PGLQI  +ALFAN+LPS +VE  TFL D +
Sbjct: 169 SPGLQILPFALFANDLPSELVEATTFLSDEE 199



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>GL31_ARATH (P94040) Germin-like protein subfamily 3 member 1 precursor|
           (AtGER1) (At-GERM1) (AtGLP1)
          Length = 208

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = -2

Query: 328 NPGLQITDYALFANNLPSAVVEKVTFLD 245
           NPGLQI D+ALFAN+LP+ +V   TFLD
Sbjct: 166 NPGLQILDFALFANSLPTELVVGTTFLD 193



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>AB19B_PRUPE (O04012) Auxin-binding protein ABP19b precursor|
          Length = 209

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = -2

Query: 331 PNPGLQITDYALFANNLPSAVVEKVTFLDDAQ 236
           P+PGLQI D+ALF N+L + ++ + T LD  Q
Sbjct: 166 PSPGLQIVDFALFKNDLATELIAQTTLLDAPQ 197



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>GLP1_BRANA (P46271) Germin-like protein 1 precursor|
          Length = 207

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = -2

Query: 328 NPGLQITDYALFANNLPSAVVEKVTFLDDA 239
           +PGLQI D+ALFAN L + +V   TFL  A
Sbjct: 165 SPGLQILDFALFANTLSTELVSATTFLPPA 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,453,148
Number of Sequences: 219361
Number of extensions: 481760
Number of successful extensions: 949
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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