ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RECN_XYLFT (Q87BS5) DNA repair protein recN (Recombination prote... 28 4.9
2CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel al... 28 6.4
3CDD_BACHD (Q9KD53) Cytidine deaminase (EC 3.5.4.5) (Cytidine ami... 28 8.4

>RECN_XYLFT (Q87BS5) DNA repair protein recN (Recombination protein N)|
          Length = 557

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 18  IHSLGHTLGSINLHCAQLGRGHLARSMMMIQINTQSTCSYTLIHDVQV 161
           +H+  HTL  +N H A+LG         MIQ++   T    + +D+ +
Sbjct: 245 LHAARHTLSRVNEHDARLGEVETLLDNAMIQVDEALTLLDRIHNDLNI 292



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>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit|
           (Voltage-gated calcium channel alpha subunit Cav1.2)
           (Calcium channel, L type, alpha-1 polypeptide, isoform
           1, cardiac muscle) (Smooth muscle calcium channel
           blocker receptor)
          Length = 2171

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 105 IQINTQSTCSYTLIHDVQV-HMHISSDGQTDG 197
           +   T+STC  T++H+ Q+ H +IS  G   G
Sbjct: 20  LSAETESTCKGTVVHEAQLNHFYISPGGSNYG 51



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>CDD_BACHD (Q9KD53) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)|
           (CDA)
          Length = 132

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = -1

Query: 112 ICIIIIERARCPLPSCAQCKLIEPKVCPSE 23
           + I ++   + P+P C  C+ +  ++CP++
Sbjct: 71  VAIAVVADTKRPVPPCGACRQVMAELCPAD 100


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,305,064
Number of Sequences: 219361
Number of extensions: 628805
Number of successful extensions: 2001
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2001
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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