ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HADD_PSEPU (Q52086) (R)-2-haloacid dehalogenase (EC 3.8.1.9) (D-... 29 3.5
2VMSA_HBVWP (Q02317) Major surface antigen precursor 28 4.6

>HADD_PSEPU (Q52086) (R)-2-haloacid dehalogenase (EC 3.8.1.9) (D-2-haloacid|
           dehalogenase) (D-DEX)
          Length = 301

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 108 PWNGIARWITACLRHFSSKFSRRYTTSGILIARAMRRHGHSKWQSSVQKRTWELLGGFLV 287
           PW G+     A  R F ++  RR+  S        + H   +    ++ R+WEL+G   V
Sbjct: 47  PWVGVITQAVAYYRPFFAEAWRRFAPSA-------KTHFFERASDDIRIRSWELMGQSFV 99

Query: 288 L 290
           +
Sbjct: 100 I 100



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>VMSA_HBVWP (Q02317) Major surface antigen precursor|
          Length = 399

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 257 PLLNGTLPFAMPMPPHCSSNKYSGRRVTP 171
           P   G L     MPP  S+N+ SGR+ TP
Sbjct: 78  PQAQGILATVPAMPPPASTNRQSGRQPTP 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,477,452
Number of Sequences: 219361
Number of extensions: 926809
Number of successful extensions: 2396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2396
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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