ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MATK_CHAGO (Q7YKY4) Maturase K (Intron maturase) 28 4.7
2C8AP2_HUMAN (Q9UKL3) CASP8-associated protein 2 (FLICE-associate... 28 6.1
3MATK_CHACO (Q7YKY5) Maturase K (Intron maturase) 28 8.0

>MATK_CHAGO (Q7YKY4) Maturase K (Intron maturase)|
          Length = 516

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 72  RNIITYYSGCCTSKNRGKSQ 131
           RNII YYSGC    + GK Q
Sbjct: 419 RNIILYYSGCSNRSDLGKIQ 438



to top

>C8AP2_HUMAN (Q9UKL3) CASP8-associated protein 2 (FLICE-associated huge protein)|
          Length = 1982

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 11/40 (27%)
 Frame = +3

Query: 120 GKSQPKTKVKK-------EAEEEGEQLNWSW----PGDRS 206
           GK +PKT+ K        +++ +GE++N SW    PG+RS
Sbjct: 292 GKGEPKTESKSSKFKSNSDSDYKGERINSSWEKETPGERS 331



to top

>MATK_CHACO (Q7YKY5) Maturase K (Intron maturase)|
          Length = 516

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 72  RNIITYYSGCCTSKNRGKSQ 131
           RNI+ YYSGC    + GK Q
Sbjct: 419 RNILLYYSGCSNRSDLGKIQ 438


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,627,697
Number of Sequences: 219361
Number of extensions: 349209
Number of successful extensions: 1770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1761
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top