ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet98g02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475057.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 210 Score = 73.8 bits (37), Expect = 2e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 216 gtggtgatgtgcacgccgatgacgatgacaaagagagcgatgagggcgaagta 268 ||||||||||| || |||||||||||||||||||| | ||||||||||||||| Sbjct: 203 gtggtgatgtgtactccgatgacgatgacaaagagggtgatgagggcgaagta 151
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 2e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 216 gtggtgatgtgcacgccgatgacgatgacaaagagagcgatgagggcgaagta 268 ||||||||||| || |||||||||||||||||||| | ||||||||||||||| Sbjct: 162326 gtggtgatgtgtactccgatgacgatgacaaagagggtgatgagggcgaagta 162274
>dbj|AK066339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062F19, full insert sequence Length = 641 Score = 73.8 bits (37), Expect = 2e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 216 gtggtgatgtgcacgccgatgacgatgacaaagagagcgatgagggcgaagta 268 ||||||||||| || |||||||||||||||||||| | ||||||||||||||| Sbjct: 385 gtggtgatgtgtactccgatgacgatgacaaagagggtgatgagggcgaagta 333
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 73.8 bits (37), Expect = 2e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 216 gtggtgatgtgcacgccgatgacgatgacaaagagagcgatgagggcgaagta 268 ||||||||||| || |||||||||||||||||||| | ||||||||||||||| Sbjct: 44510 gtggtgatgtgtactccgatgacgatgacaaagagggtgatgagggcgaagta 44458
>gb|AC005405.1|AC005405 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence Length = 94362 Score = 48.1 bits (24), Expect = 0.014 Identities = 27/28 (96%) Strand = Plus / Minus Query: 134 aaaaacaaaagtaaagaaagaagcagaa 161 ||||||||||||||| |||||||||||| Sbjct: 44503 aaaaacaaaagtaaataaagaagcagaa 44476
>gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, complete sequence Length = 205272 Score = 46.1 bits (23), Expect = 0.056 Identities = 26/27 (96%) Strand = Plus / Plus Query: 134 aaaaacaaaagtaaagaaagaagcaga 160 ||||||||||||||| ||||||||||| Sbjct: 153552 aaaaacaaaagtaaaaaaagaagcaga 153578
>gb|AC018632.1|AC018632 Genomic Sequence For Arabidopsis thaliana Clone F3F24, Chromosome V, complete sequence Length = 151828 Score = 46.1 bits (23), Expect = 0.056 Identities = 26/27 (96%) Strand = Plus / Plus Query: 139 caaaagtaaagaaagaagcagaagagg 165 |||||||||||||||||| |||||||| Sbjct: 10032 caaaagtaaagaaagaagaagaagagg 10058
>dbj|AP001207.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1562D12 Length = 153936 Score = 46.1 bits (23), Expect = 0.056 Identities = 32/35 (91%) Strand = Plus / Plus Query: 134 aaaaacaaaagtaaagaaagaagcagaagaggaag 168 ||||| ||||| ||||||||||| ||||||||||| Sbjct: 100593 aaaaagaaaagaaaagaaagaagaagaagaggaag 100627
>gb|AC102663.6| Mus musculus chromosome 6, clone RP23-244M15, complete sequence Length = 223742 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 142 aagtaaagaaagaagcagaaga 163 |||||||||||||||||||||| Sbjct: 37825 aagtaaagaaagaagcagaaga 37804
>emb|AL049764.4|HS362J20 Human DNA sequence from clone RP3-362J20 on chromosome 22q13.1-13.31, complete sequence Length = 28247 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 7 ccaagtaaacatctctttattaatca 32 |||||||||||||||| ||||||||| Sbjct: 6673 ccaagtaaacatctctgtattaatca 6698
>emb|AL356319.18| Human DNA sequence from clone RP11-810G21 on chromosome 13 Contains a CpG island, complete sequence Length = 137260 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Minus Query: 147 aagaaagaagcagaagaggaaggaga 172 |||||||||| ||||||||||||||| Sbjct: 49663 aagaaagaagaagaagaggaaggaga 49638
>emb|AL808132.5| Mouse DNA sequence from clone RP23-125A12 on chromosome X, complete sequence Length = 201114 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 134 aaaaacaaaagtaaagaaagaa 155 |||||||||||||||||||||| Sbjct: 201017 aaaaacaaaagtaaagaaagaa 200996
>emb|AL831760.3| Mouse DNA sequence from clone RP23-382F2 on chromosome X, complete sequence Length = 138140 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 134 aaaaacaaaagtaaagaaagaa 155 |||||||||||||||||||||| Sbjct: 1903 aaaaacaaaagtaaagaaagaa 1882
>ref|XM_665128.1| Plasmodium berghei strain ANKA hypothetical protein (PB405875.00.0) partial mRNA Length = 696 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 aaaagtaaagaaagaagcaga 160 ||||||||||||||||||||| Sbjct: 511 aaaagtaaagaaagaagcaga 531
>ref|XM_670931.1| Plasmodium berghei strain ANKA U2 snRNP auxiliary factor, (PB001017.03.0) partial mRNA Length = 1893 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 aaaagtaaagaaagaagcaga 160 ||||||||||||||||||||| Sbjct: 322 aaaagtaaagaaagaagcaga 342
>gb|AC157737.2| Xenopus tropicalis clone ISB1-388J19, complete sequence Length = 74648 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 gaaagaagcagaagaggaagg 169 ||||||||||||||||||||| Sbjct: 39930 gaaagaagcagaagaggaagg 39910
>gb|AC123178.4| Rattus norvegicus 7 BAC CH230-20I17 (Children's Hospital Oakland Research Institute) complete sequence Length = 221236 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 aaagaaagaagcagaagaggaagga 170 ||||||||| ||||||||||||||| Sbjct: 136244 aaagaaagaggcagaagaggaagga 136268
>emb|CR533559.1| Homo sapiens full open reading frame cDNA clone RZPDo834F0821D for gene TIGD6, tigger transposable element derived 6; complete cds, incl. stopcodon Length = 1766 Score = 42.1 bits (21), Expect = 0.88 Identities = 27/29 (93%) Strand = Plus / Minus Query: 124 agagtcagccaaaaacaaaagtaaagaaa 152 |||| |||||||||||||||| ||||||| Sbjct: 1754 agagacagccaaaaacaaaagaaaagaaa 1726
>emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4 Length = 343050 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Plus Query: 132 ccaaaaacaaaagtaaagaaagaag 156 ||||||| ||||||||||||||||| Sbjct: 272496 ccaaaaaaaaaagtaaagaaagaag 272520
>emb|AL136539.1|HSM801513 Homo sapiens mRNA; cDNA DKFZp761E2110 (from clone DKFZp761E2110) Length = 3434 Score = 42.1 bits (21), Expect = 0.88 Identities = 27/29 (93%) Strand = Plus / Minus Query: 124 agagtcagccaaaaacaaaagtaaagaaa 152 |||| |||||||||||||||| ||||||| Sbjct: 1940 agagacagccaaaaacaaaagaaaagaaa 1912
>gb|AC109211.10| Mus musculus chromosome 8, clone RP23-27N18, complete sequence Length = 212670 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 agtaaagaaagaagcagaaga 163 ||||||||||||||||||||| Sbjct: 91459 agtaaagaaagaagcagaaga 91439
>dbj|AK056604.1| Homo sapiens cDNA FLJ32042 fis, clone NTONG2000878, weakly similar to MAJOR CENTROMERE AUTOANTIGEN B Length = 2582 Score = 42.1 bits (21), Expect = 0.88 Identities = 27/29 (93%) Strand = Plus / Minus Query: 124 agagtcagccaaaaacaaaagtaaagaaa 152 |||| |||||||||||||||| ||||||| Sbjct: 2017 agagacagccaaaaacaaaagaaaagaaa 1989
>gb|AC011406.5| Homo sapiens chromosome 5 clone CTB-46E9, complete sequence Length = 89012 Score = 42.1 bits (21), Expect = 0.88 Identities = 27/29 (93%) Strand = Plus / Minus Query: 124 agagtcagccaaaaacaaaagtaaagaaa 152 |||| |||||||||||||||| ||||||| Sbjct: 58229 agagacagccaaaaacaaaagaaaagaaa 58201
>ref|NM_030953.2| Homo sapiens tigger transposable element derived 6 (TIGD6), mRNA Length = 3508 Score = 42.1 bits (21), Expect = 0.88 Identities = 27/29 (93%) Strand = Plus / Minus Query: 124 agagtcagccaaaaacaaaagtaaagaaa 152 |||| |||||||||||||||| ||||||| Sbjct: 2016 agagacagccaaaaacaaaagaaaagaaa 1988
>gb|AC010256.6| Homo sapiens chromosome 5 clone CTC-445M6, complete sequence Length = 141488 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 agaaagaagcagaagaggaag 168 ||||||||||||||||||||| Sbjct: 65151 agaaagaagcagaagaggaag 65131
>gb|AC009941.5|AC009941 Homo sapiens, clone RP11-115D10, complete sequence Length = 168829 Score = 42.1 bits (21), Expect = 0.88 Identities = 27/29 (93%) Strand = Plus / Plus Query: 135 aaaacaaaagtaaagaaagaagcagaaga 163 |||| ||||||||||||||||| |||||| Sbjct: 90917 aaaagaaaagtaaagaaagaagaagaaga 90945
>gb|AC096734.3| Homo sapiens BAC clone RP11-109E24 from 4, complete sequence Length = 179753 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 aaaacaaaagtaaagaaagaa 155 ||||||||||||||||||||| Sbjct: 171794 aaaacaaaagtaaagaaagaa 171774
>gb|AC131954.1| Homo sapiens BAC clone RP11-761I13 from 2, complete sequence Length = 100732 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Minus Query: 155 agcagaagaggaaggagagcagctt 179 |||||||||||||||| |||||||| Sbjct: 94067 agcagaagaggaaggacagcagctt 94043
>emb|AL512359.2|CNS07EF8 Human chromosome 14 DNA sequence BAC R-286B5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157395 Score = 42.1 bits (21), Expect = 0.88 Identities = 27/29 (93%) Strand = Plus / Minus Query: 135 aaaacaaaagtaaagaaagaagcagaaga 163 ||||||||| |||||||||||| |||||| Sbjct: 109566 aaaacaaaaataaagaaagaagaagaaga 109538
>emb|AL671759.10| Mouse DNA sequence from clone RP23-151A15 on chromosome 4, complete sequence Length = 141790 Score = 42.1 bits (21), Expect = 0.88 Identities = 30/33 (90%) Strand = Plus / Plus Query: 134 aaaaacaaaagtaaagaaagaagcagaagagga 166 ||||| ||||| ||||||||||| ||||||||| Sbjct: 9683 aaaaaaaaaagaaaagaaagaaggagaagagga 9715
>gb|AC163657.3| Mus musculus BAC clone RP24-302A24 from chromosome 1, complete sequence Length = 197913 Score = 40.1 bits (20), Expect = 3.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 133 caaaaacaaaagtaaagaaagaagcagaagaggaag 168 ||||||||||| ||| ||||||| ||||||||||| Sbjct: 158000 caaaaacaaaaaaaaaaaaagaagaagaagaggaag 157965
>ref|XM_506811.1| PREDICTED Oryza sativa (japonica cultivar-group), P0047E05.40 mRNA Length = 537 Score = 40.1 bits (20), Expect = 3.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 221 gatgtgcacgccgatgacgatgacaaagagagcgatgagggcgaagta 268 |||||| ||||||||| |||||| |||| | ||||||||||||||| Sbjct: 308 gatgtggacgccgatggcgatgaggaagatggtgatgagggcgaagta 261
>ref|XM_465906.1| Oryza sativa (japonica cultivar-group), mRNA Length = 521 Score = 40.1 bits (20), Expect = 3.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 221 gatgtgcacgccgatgacgatgacaaagagagcgatgagggcgaagta 268 |||||| ||||||||| |||||| |||| | ||||||||||||||| Sbjct: 287 gatgtggacgccgatggcgatgaggaagatggtgatgagggcgaagta 240
>gb|AC159972.5| Mus musculus chromosome 1, clone RP23-35D23, complete sequence Length = 199094 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 aaagaagcagaagaggaaggagag 173 |||||||||||| ||||||||||| Sbjct: 184161 aaagaagcagaataggaaggagag 184184
>gb|AC158348.4| Mus musculus chromosome 8, clone RP24-134G9, complete sequence Length = 175836 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 aagcagaagaggaaggagag 173 |||||||||||||||||||| Sbjct: 138245 aagcagaagaggaaggagag 138226
>gb|AC099631.6| Mus musculus chromosome 1, clone RP24-93F22, complete sequence Length = 185048 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aacaaagaaacatcatcaca 86 |||||||||||||||||||| Sbjct: 69530 aacaaagaaacatcatcaca 69549
>gb|AC101714.10| Mus musculus chromosome 8, clone RP23-283I2, complete sequence Length = 157233 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 aagcagaagaggaaggagag 173 |||||||||||||||||||| Sbjct: 20918 aagcagaagaggaaggagag 20899
>gb|AC098390.6| Rattus norvegicus 1 BAC CH230-1M24 (Children's Hospital Oakland Research Institute) complete sequence Length = 196477 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 agtaaagaaagaagcagaag 162 |||||||||||||||||||| Sbjct: 39556 agtaaagaaagaagcagaag 39575
>gb|AC147905.2| Xenopus tropicalis clone CH216-68C1, complete sequence Length = 159448 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 gaaagaagcagaagaggaag 168 |||||||||||||||||||| Sbjct: 109536 gaaagaagcagaagaggaag 109555
>gb|AY278407.1| Drosophila serrata histone H2A gene, partial cds; and histone H2B-like gene, partial sequence Length = 488 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 427 aagaagcggaagaggaaggagagc 450
>gb|AY147438.1| Drosophila punjabiensis isolate YY001339 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 488 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 428 aagaagcggaagaggaaggagagc 451
>gb|AY147437.1| Drosophila leontia isolate YY001338 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B-like gene, partial sequence Length = 497 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 436 aagaagcggaagaggaaggagagc 459
>gb|AY147436.1| Drosophila leontia isolate YY001337 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B-like gene, partial sequence Length = 497 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 436 aagaagcggaagaggaaggagagc 459
>gb|AY147435.1| Drosophila kikkawai isolate YY001336 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 494 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 435 aagaagcggaagaggaaggagagc 458
>gb|AY147434.1| Drosophila jambulina isolate YY001335 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 484 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 425 aagaagcggaagaggaaggagagc 448
>gb|AY147429.1| Drosophila seguyi isolate YY001340 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B-like gene, partial sequence Length = 488 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 427 aagaagcggaagaggaaggagagc 450
>gb|AY147428.1| Drosophila birchii isolate YY001334 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 495 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 436 aagaagcggaagaggaaggagagc 459
>gb|AY147427.1| Drosophila bocki isolate YY001333 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 494 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 435 aagaagcggaagaggaaggagagc 458
>gb|AY147426.1| Drosophila baimaii isolate YY001332 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 487 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 427 aagaagcggaagaggaaggagagc 450
>gb|AY147425.1| Drosophila barbarae isolate DPYY1331 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 492 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 433 aagaagcggaagaggaaggagagc 456
>gb|AY147424.1| Drosophila triauraria isolate YY001330 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 487 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 427 aagaagcggaagaggaaggagagc 450
>gb|AY147423.1| Drosophila tani isolate YY001329 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 488 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 429 aagaagcggaagaggaaggagagc 452
>gb|AY147422.1| Drosophila rufa isolate YY001328 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 486 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 427 aagaagcggaagaggaaggagagc 450
>gb|AY147421.1| Drosophila quadraria isolate YY001327 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 487 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 426 aagaagcggaagaggaaggagagc 449
>gb|AY147420.1| Drosophila biauraria isolate YY001326 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 487 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 427 aagaagcggaagaggaaggagagc 450
>gb|AY147419.1| Drosophila auraria isolate DPAJ1325 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 486 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 426 aagaagcggaagaggaaggagagc 449
>gb|AY147418.1| Drosophila auraria isolate YY001325 histone H2A gene, partial cds; H2A/H2B intergenic spacer region, complete sequence; and histone H2B gene, partial cds Length = 486 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 426 aagaagcggaagaggaaggagagc 449
>gb|AC107664.8| Mus musculus chromosome 17, clone RP23-103F2, complete sequence Length = 208198 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 agaaagaagcagaagaggaa 167 |||||||||||||||||||| Sbjct: 39283 agaaagaagcagaagaggaa 39264
>gb|AC126942.4| Mus musculus BAC clone RP23-174P9 from chromosome 17, complete sequence Length = 182423 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 agaaagaagcagaagaggaa 167 |||||||||||||||||||| Sbjct: 162648 agaaagaagcagaagaggaa 162629
>gb|AC122344.3| Mus musculus BAC clone RP23-364M19 from chromosome 9, complete sequence Length = 209165 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 aaagaaagaagcagaagagg 165 |||||||||||||||||||| Sbjct: 186636 aaagaaagaagcagaagagg 186655
>gb|AC102573.10| Mus musculus chromosome 1, clone RP23-237L7, complete sequence Length = 185146 Score = 40.1 bits (20), Expect = 3.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 133 caaaaacaaaagtaaagaaagaagcagaagaggaag 168 ||||||||||| ||| ||||||| ||||||||||| Sbjct: 15599 caaaaacaaaaaaaaaaaaagaagaagaagaggaag 15564
>ref|XM_648718.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (71.t00023) partial mRNA Length = 861 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 aaagtaaagaaagaagcagaagag 164 |||| ||||||||||||||||||| Sbjct: 538 aaagcaaagaaagaagcagaagag 561 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 aaagtaaagaaagaagcagaagag 164 |||| ||||||||||||||||||| Sbjct: 514 aaagcaaagaaagaagcagaagag 537 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 aaagtaaagaaagaagcagaagag 164 |||| ||||||||||||||||||| Sbjct: 490 aaagcaaagaaagaagcagaagag 513 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 aaagtaaagaaagaagcagaagag 164 |||| ||||||||||||||||||| Sbjct: 466 aaagcaaagaaagaagcagaagag 489
>emb|AL591604.6| Human DNA sequence from clone RP11-356F4 on chromosome 1 Contains the 5' end of the SLICK gene for a sodium- and chloride-activated ATP-sensitive potassium channel, complete sequence Length = 185560 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 134 aaaaacaaaagtaaagaaagaagcagaa 161 ||||| |||||||||||||||| ||||| Sbjct: 70058 aaaaaaaaaagtaaagaaagaaacagaa 70085
>emb|AL445201.14| Human DNA sequence from clone RP11-358L16 on chromosome 10 Contains a AFR GTPase-activating protein (MRIP2) pseudogene, a novel gene, gene LOC93550, the 3' end of a KIAA0592 pseudogene and three CpG islands, complete sequence Length = 179193 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aaaagtaaagaaagaagcag 159 |||||||||||||||||||| Sbjct: 88215 aaaagtaaagaaagaagcag 88234
>emb|AL357083.19| Human DNA sequence from clone RP11-562P17 on chromosome 13 Contains part of the NEAB gene for neurobeachin (BCL8B FLJ10197 KIAA1544) and a prohibitin (PHB) pseudogene, complete sequence Length = 134156 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 aagcagaagaggaaggagagcagc 177 |||||||||||||| ||||||||| Sbjct: 100479 aagcagaagaggaaagagagcagc 100502
>emb|AL359706.18| Human DNA sequence from clone RP11-245H20 on chromosome 13 Contains the 5' end of the NUFIP1 gene for nuclear fragile X mental retardation protein interacting protein 1, the gene for lipopolysaccharide specific response-7 protein (LSR7) and a CpG island, complete sequence Length = 61576 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 agaaagaagcagaagaggaa 167 |||||||||||||||||||| Sbjct: 24567 agaaagaagcagaagaggaa 24586
>emb|AL353682.11| Human DNA sequence from clone RP11-203D19 on chromosome 9 Contains the 3' end of the TLE1 gene for transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) (ESG, GRG1), complete sequence Length = 90331 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 143 agtaaagaaagaagcagaagaggaagga 170 |||||||| ||||||||||| ||||||| Sbjct: 33263 agtaaagatagaagcagaaggggaagga 33290
>emb|AL157812.5| Human DNA sequence from clone RP11-14B2 on chromosome 13q21.1-21.3 Contains GSSs and STSs, complete sequence Length = 166971 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 agaaagaagcagaagaggaa 167 |||||||||||||||||||| Sbjct: 48246 agaaagaagcagaagaggaa 48265
>gb|AY233689.1| Myrmecia pyriformis cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 886 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gtaaagaaagaagcagaaga 163 |||||||||||||||||||| Sbjct: 383 gtaaagaaagaagcagaaga 364
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 aagaacagaggcaagagtcagcca 134 |||||||||||||||| ||||||| Sbjct: 1238137 aagaacagaggcaagattcagcca 1238114
>gb|AC166324.1| Mus musculus BAC clone RP24-500J7 from chromosome 9, complete sequence Length = 168018 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 aaagaaagaagcagaagaggaagg 169 ||||||||||| |||||||||||| Sbjct: 156003 aaagaaagaagaagaagaggaagg 155980
>ref|NM_001016227.2| Xenopus tropicalis zinc finger protein 289, ID1 regulated (znf289), mRNA Length = 3414 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 taaagaaagaagcagaagag 164 |||||||||||||||||||| Sbjct: 817 taaagaaagaagcagaagag 836
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ggaaggagagcagcttaatt 183 |||||||||||||||||||| Sbjct: 121406 ggaaggagagcagcttaatt 121387
>emb|AL731792.12| Mouse DNA sequence from clone RP23-189P1 on chromosome 11 Contains the 5' end of a novel gene, the 3' end of the Spnb2 gene for spectrin beta 2 and a CpG island, complete sequence Length = 143722 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 taaagaaagaagcagaagaggaag 168 |||||||||||| ||||||||||| Sbjct: 46523 taaagaaagaaggagaagaggaag 46546
>gb|AC023192.8| Homo sapiens chromosome 18, clone RP11-562H1, complete sequence Length = 167944 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cagccaaaaacaaaagtaaa 148 |||||||||||||||||||| Sbjct: 152240 cagccaaaaacaaaagtaaa 152221
>gb|AC087847.6| Homo sapiens chromosome 8, clone RP11-353D5, complete sequence Length = 170722 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 accaagtaaacatctcttta 25 |||||||||||||||||||| Sbjct: 5397 accaagtaaacatctcttta 5378
>gb|AF169823.1| Spodoptera exigua nucleopolyhedrovirus complete genome Length = 135611 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 gtgcacgccgatgacgatgacaaa 247 |||||||||||| ||||||||||| Sbjct: 31454 gtgcacgccgattacgatgacaaa 31431
>gb|AC084250.6| Homo sapiens chromosome 8, clone RP11-89F14, complete sequence Length = 151889 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 accaagtaaacatctcttta 25 |||||||||||||||||||| Sbjct: 106485 accaagtaaacatctcttta 106504
>gb|AC116336.2| Homo sapiens chromosome 5 clone CTD-2306L10, complete sequence Length = 145859 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 aagaaagaagcagaagaggaagga 170 |||||||||| ||||||||||||| Sbjct: 101390 aagaaagaagaagaagaggaagga 101413
>dbj|AK140840.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130041K16 product:unclassifiable, full insert sequence Length = 2998 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 aagcagaagaggaaggagag 173 |||||||||||||||||||| Sbjct: 386 aagcagaagaggaaggagag 367
>gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 189286 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 gaaagaagcagaagaggaag 168 |||||||||||||||||||| Sbjct: 36788 gaaagaagcagaagaggaag 36807
>gb|AC083902.5| Homo sapiens BAC clone RP11-766F14 from 4, complete sequence Length = 204860 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 134 aaaaacaaaagtaaagaaagaagcagaa 161 ||||| ||||||||||||||||| |||| Sbjct: 112695 aaaaaaaaaagtaaagaaagaagaagaa 112722
>gb|AC091198.6| Homo sapiens chromosome 18, clone RP11-258B16, complete sequence Length = 173237 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 cagccaaaaacaaaagtaaa 148 |||||||||||||||||||| Sbjct: 83574 cagccaaaaacaaaagtaaa 83593
>gb|AC158998.2| Mus musculus BAC clone RP24-290P19 from chromosome 9, complete sequence Length = 173036 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 aaagaaagaagcagaagaggaagg 169 ||||||||||| |||||||||||| Sbjct: 158538 aaagaaagaagaagaagaggaagg 158561
>gb|AC008522.6| Homo sapiens chromosome 5 clone CTC-463N11, complete sequence Length = 164462 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 caaaaacaaaagtaaagaaa 152 |||||||||||||||||||| Sbjct: 88258 caaaaacaaaagtaaagaaa 88277
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ggaaggagagcagcttaatt 183 |||||||||||||||||||| Sbjct: 19029481 ggaaggagagcagcttaatt 19029462
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 221 gatgtgcacgccgatgacgatgacaaagagagcgatgagggcgaagta 268 |||||| ||||||||| |||||| |||| | ||||||||||||||| Sbjct: 18245550 gatgtggacgccgatggcgatgaggaagatggtgatgagggcgaagta 18245597
>emb|BX571825.6| Zebrafish DNA sequence from clone DKEY-158E13 in linkage group 18, complete sequence Length = 200814 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 caaaaacaaaagtaaagaaa 152 |||||||||||||||||||| Sbjct: 181236 caaaaacaaaagtaaagaaa 181217
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 40.1 bits (20), Expect = 3.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 221 gatgtgcacgccgatgacgatgacaaagagagcgatgagggcgaagta 268 |||||| ||||||||| |||||| |||| | ||||||||||||||| Sbjct: 46763 gatgtggacgccgatggcgatgaggaagatggtgatgagggcgaagta 46810
>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0047E05 Length = 184323 Score = 40.1 bits (20), Expect = 3.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 221 gatgtgcacgccgatgacgatgacaaagagagcgatgagggcgaagta 268 |||||| ||||||||| |||||| |||| | ||||||||||||||| Sbjct: 168951 gatgtggacgccgatggcgatgaggaagatggtgatgagggcgaagta 168998
>emb|BX546483.5| Mouse DNA sequence from clone RP24-121F2 on chromosome X, complete sequence Length = 74439 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagaagcagaagaggaagga 170 |||||||||||||||||||| Sbjct: 52665 aagaagcagaagaggaagga 52646
>dbj|AK121771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092F10, full insert sequence Length = 538 Score = 40.1 bits (20), Expect = 3.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 221 gatgtgcacgccgatgacgatgacaaagagagcgatgagggcgaagta 268 |||||| ||||||||| |||||| |||| | ||||||||||||||| Sbjct: 309 gatgtggacgccgatggcgatgaggaagatggtgatgagggcgaagta 262
>dbj|AK063931.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D03, full insert sequence Length = 530 Score = 40.1 bits (20), Expect = 3.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 221 gatgtgcacgccgatgacgatgacaaagagagcgatgagggcgaagta 268 |||||| ||||||||| |||||| |||| | ||||||||||||||| Sbjct: 285 gatgtggacgccgatggcgatgaggaagatggtgatgagggcgaagta 238
>dbj|AP001979.7| Homo sapiens genomic DNA, chromosome 11 clone:RP11-259P6, complete sequence Length = 147533 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 aaacaaaagtaaagaaagaa 155 |||||||||||||||||||| Sbjct: 62721 aaacaaaagtaaagaaagaa 62702
>emb|CR926298.2| Xenopus tropicalis finished cDNA, clone TEgg043a17 Length = 3414 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 taaagaaagaagcagaagag 164 |||||||||||||||||||| Sbjct: 817 taaagaaagaagcagaagag 836
>gb|AC132376.4| Mus musculus BAC clone RP24-80J23 from 1, complete sequence Length = 191858 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aacaaagaaacatcatcaca 86 |||||||||||||||||||| Sbjct: 128694 aacaaagaaacatcatcaca 128713
>emb|AL683811.6| Mouse DNA sequence from clone RP23-291K22 on chromosome 4, complete sequence Length = 171213 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 agaagcagaagaggaaggag 171 |||||||||||||||||||| Sbjct: 114285 agaagcagaagaggaaggag 114266
>gb|AY623036.1| Rattus norvegicus clone S33-D hypothetical protein mRNA, partial cds Length = 1746 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 agaagcagaagaggaaggag 171 |||||||||||||||||||| Sbjct: 696 agaagcagaagaggaaggag 715
>emb|AL596446.11| Mouse DNA sequence from clone RP23-386E10 on chromosome 11, complete sequence Length = 191735 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 agaaagaagcagaagaggaa 167 |||||||||||||||||||| Sbjct: 149616 agaaagaagcagaagaggaa 149635
>emb|AL807816.7| Mouse DNA sequence from clone RP23-13H12 on chromosome X, complete sequence Length = 193219 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 aacaaaagtaaagaaagaag 156 |||||||||||||||||||| Sbjct: 172522 aacaaaagtaaagaaagaag 172503
>emb|AJ224810.1|DSAJ4810 Drosophila seguyi histone H2A-H2B intergenic spacer Length = 479 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 420 aagaagcggaagaggaaggagagc 443
>emb|AJ224811.1|DKAJ4811 Drosophila kikkawai histone H2A-H2B intergenic spacer Length = 496 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagcagaagaggaaggagagc 174 ||||||| |||||||||||||||| Sbjct: 437 aagaagcggaagaggaaggagagc 460 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,637,621 Number of Sequences: 3902068 Number of extensions: 3637621 Number of successful extensions: 105679 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 105395 Number of HSP's gapped (non-prelim): 286 length of query: 268 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 246 effective length of database: 17,147,199,772 effective search space: 4218211143912 effective search space used: 4218211143912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
