ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CS021_MOUSE (Q9D279) Protein C19orf21 homolog 32 0.58
2ERCC5_XENLA (P14629) DNA-repair protein complementing XP-G cells... 28 4.9

>CS021_MOUSE (Q9D279) Protein C19orf21 homolog|
          Length = 648

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 55  AKPLLSRAWWRERPVRRTDNGRPRVHVQRD 144
           ++PLLS+    E P RR D GRP ++VQRD
Sbjct: 296 SRPLLSKMSLTETPPRR-DRGRPSLYVQRD 324



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>ERCC5_XENLA (P14629) DNA-repair protein complementing XP-G cells homolog|
            (Xeroderma pigmentosum group G-complementing protein
            homolog)
          Length = 1196

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 47   PTLQSHYYQEPGGGRGQCGARTMAAPAYTSNGTS 148
            PT  S   Q+PGGG      +T+++ AY+S+G+S
Sbjct: 1096 PTECSQEDQDPGGGFIGIELKTLSSKAYSSDGSS 1129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,984,667
Number of Sequences: 219361
Number of extensions: 446603
Number of successful extensions: 1523
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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