ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC093877.3| Homo sapiens BAC clone RP11-637G19 from 4, comple... 42 0.57
2emb|Z82204.1|HS362G17 Human DNA sequence from clone RP3-362G17 o... 40 2.3
3emb|BX005005.19| Zebrafish DNA sequence from clone DKEY-70O15 in... 40 2.3
4emb|CR396593.6| Zebrafish DNA sequence from clone CH211-194G1 in... 40 2.3
5gb|AC154341.2| Mus musculus BAC clone RP23-240C2 from 16, comple... 40 2.3
6emb|AL935051.8| Zebrafish DNA sequence from clone CH211-173A19 i... 40 2.3
7dbj|D16472.1|HUMXQF Human mRNA, Xq terminal portion 40 2.3
8gb|AC161194.14| Mus musculus chromosome 15, clone RP23-345C13, c... 38 8.9
9gb|AC110512.13| Mus musculus chromosome 15, clone RP24-134E9, co... 38 8.9
10gb|AC151805.20| Medicago truncatula clone mth2-59n17, complete s... 38 8.9
11gb|AC170084.13| Medicago truncatula clone mth2-156k10, complete ... 38 8.9
12emb|CR759874.20| Zebrafish DNA sequence from clone CH211-214H24 ... 38 8.9
13emb|BX927371.12| Zebrafish DNA sequence from clone DKEY-1C17 in ... 38 8.9
14gb|AC121857.2| Mus musculus BAC clone RP24-98A9 from 1, complete... 38 8.9
15emb|AL512602.8| Human DNA sequence from clone RP11-111M7 on chro... 38 8.9
16emb|BX927303.11| Zebrafish DNA sequence from clone CH211-67L13 i... 38 8.9
17emb|BX649495.8| Zebrafish DNA sequence from clone DKEY-177B16 in... 38 8.9
18gb|AC151459.30| Medicago truncatula clone mth2-6e6, complete seq... 38 8.9
19dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 38 8.9
20gb|AC005171.3| Arabidopsis thaliana chromosome 2 clone T4E14 map... 38 8.9
21gb|AC153649.4| Mus musculus BAC clone RP24-93B8 from chromosome ... 38 8.9
22gb|AC008343.4|AC008343 Drosophila melanogaster, chromosome 2R, r... 38 8.9
23gb|AC093763.3| Homo sapiens BAC clone RP11-91J3 from 4, complete... 38 8.9
24gb|AC139844.11| Mus musculus chromosome 15, clone RP23-342B21, c... 38 8.9
25dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 38 8.9
26emb|BX255962.9| Zebrafish DNA sequence from clone CH211-269C21 i... 38 8.9
27emb|BX005083.10| Zebrafish DNA sequence from clone CH211-220F13 ... 38 8.9
28emb|CR388011.14| Zebrafish DNA sequence from clone CH211-135J15 ... 38 8.9
29emb|BX908398.10| Zebrafish DNA sequence from clone CH211-231A1 i... 38 8.9
30emb|BX927137.9| Zebrafish DNA sequence from clone DKEY-30L13 in ... 38 8.9
31emb|AL928920.5| Zebrafish DNA sequence from clone DKEY-14A7 in l... 38 8.9
32gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40... 38 8.9
33emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, c... 38 8.9

>gb|AC093877.3| Homo sapiens BAC clone RP11-637G19 from 4, complete sequence
          Length = 162150

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     agggaggcgagctgggagcaa 99
              |||||||||||||||||||||
Sbjct: 139765 agggaggcgagctgggagcaa 139785



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>emb|Z82204.1|HS362G17 Human DNA sequence from clone RP3-362G17 on chromosome X Contains part
             of the FGF13 gene for fibroblast growth factor 13,
             complete sequence
          Length = 75145

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   tggtactagaaacatttctt 143
             ||||||||||||||||||||
Sbjct: 71740 tggtactagaaacatttctt 71759



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>emb|BX005005.19| Zebrafish DNA sequence from clone DKEY-70O15 in linkage group 13,
             complete sequence
          Length = 153184

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   ctgttatcactatgacatct 176
             ||||||||||||||||||||
Sbjct: 91093 ctgttatcactatgacatct 91074



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>emb|CR396593.6| Zebrafish DNA sequence from clone CH211-194G1 in linkage group 5,
              complete sequence
          Length = 197143

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 31     taataacggaaatacaattttttg 54
              ||||||||| ||||||||||||||
Sbjct: 108439 taataacgggaatacaattttttg 108416



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>gb|AC154341.2| Mus musculus BAC clone RP23-240C2 from 16, complete sequence
          Length = 163871

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     tgatgggaaggaagggaggc 86
              ||||||||||||||||||||
Sbjct: 148154 tgatgggaaggaagggaggc 148173



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>emb|AL935051.8| Zebrafish DNA sequence from clone CH211-173A19 in linkage group 5,
             complete sequence
          Length = 122151

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    taataacggaaatacaattttttg 54
             ||||||||| ||||||||||||||
Sbjct: 90403 taataacgggaatacaattttttg 90426



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>dbj|D16472.1|HUMXQF Human mRNA, Xq terminal portion
          Length = 3616

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 124  tggtactagaaacatttctt 143
            ||||||||||||||||||||
Sbjct: 2644 tggtactagaaacatttctt 2663



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>gb|AC161194.14| Mus musculus chromosome 15, clone RP23-345C13, complete sequence
          Length = 193998

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 77     gaagggaggcgagctggga 95
              |||||||||||||||||||
Sbjct: 141756 gaagggaggcgagctggga 141774



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>gb|AC110512.13| Mus musculus chromosome 15, clone RP24-134E9, complete sequence
          Length = 163319

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 60    gcatagttgatgggaagga 78
             |||||||||||||||||||
Sbjct: 24446 gcatagttgatgggaagga 24464



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>gb|AC151805.20| Medicago truncatula clone mth2-59n17, complete sequence
          Length = 143937

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 138   tttcttagggggcgaaaac 156
             |||||||||||||||||||
Sbjct: 19050 tttcttagggggcgaaaac 19068



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>gb|AC170084.13| Medicago truncatula clone mth2-156k10, complete sequence
          Length = 143943

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 138    tttcttagggggcgaaaac 156
              |||||||||||||||||||
Sbjct: 124894 tttcttagggggcgaaaac 124876



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>emb|CR759874.20| Zebrafish DNA sequence from clone CH211-214H24 in linkage group 20,
             complete sequence
          Length = 223471

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    acaattttttgatagagca 62
             |||||||||||||||||||
Sbjct: 35891 acaattttttgatagagca 35873



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>emb|BX927371.12| Zebrafish DNA sequence from clone DKEY-1C17 in linkage group 7,
             complete sequence
          Length = 154034

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 159   gttatcactatgacatctc 177
             |||||||||||||||||||
Sbjct: 39078 gttatcactatgacatctc 39060



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>gb|AC121857.2| Mus musculus BAC clone RP24-98A9 from 1, complete sequence
          Length = 171124

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 22    cagttactttaataacggaaata 44
             ||||||||||||||||| |||||
Sbjct: 35889 cagttactttaataacgaaaata 35867



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>emb|AL512602.8| Human DNA sequence from clone RP11-111M7 on chromosome 9, complete
            sequence
          Length = 35187

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 68   gatgggaaggaagggaggc 86
            |||||||||||||||||||
Sbjct: 7691 gatgggaaggaagggaggc 7673



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>emb|BX927303.11| Zebrafish DNA sequence from clone CH211-67L13 in linkage group 6,
             complete sequence
          Length = 163380

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 158   tgttatcactatgacatct 176
             |||||||||||||||||||
Sbjct: 48894 tgttatcactatgacatct 48876



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>emb|BX649495.8| Zebrafish DNA sequence from clone DKEY-177B16 in linkage group 2,
             complete sequence
          Length = 81705

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 158   tgttatcactatgacatct 176
             |||||||||||||||||||
Sbjct: 65368 tgttatcactatgacatct 65350



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>gb|AC151459.30| Medicago truncatula clone mth2-6e6, complete sequence
          Length = 129518

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 138   tttcttagggggcgaaaac 156
             |||||||||||||||||||
Sbjct: 23372 tttcttagggggcgaaaac 23354



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>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
          Length = 1779707

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 60      gcatagttgatgggaagga 78
               |||||||||||||||||||
Sbjct: 1342328 gcatagttgatgggaagga 1342346



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>gb|AC005171.3| Arabidopsis thaliana chromosome 2 clone T4E14 map mi310, complete
             sequence
          Length = 138181

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 75    aggaagggaggcgagctgg 93
             |||||||||||||||||||
Sbjct: 86581 aggaagggaggcgagctgg 86563



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>gb|AC153649.4| Mus musculus BAC clone RP24-93B8 from chromosome 1, complete sequence
          Length = 162838

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 22    cagttactttaataacggaaata 44
             ||||||||||||||||| |||||
Sbjct: 65313 cagttactttaataacgaaaata 65291



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>gb|AC008343.4|AC008343 Drosophila melanogaster, chromosome 2R, region 51F-52A, BAC clone
              BACR03D24, complete sequence
          Length = 158402

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 98     aataacatgaaacccgcta 116
              |||||||||||||||||||
Sbjct: 129080 aataacatgaaacccgcta 129062



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>gb|AC093763.3| Homo sapiens BAC clone RP11-91J3 from 4, complete sequence
          Length = 154684

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 71     gggaaggaagggaggcgag 89
              |||||||||||||||||||
Sbjct: 101545 gggaaggaagggaggcgag 101527



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>gb|AC139844.11| Mus musculus chromosome 15, clone RP23-342B21, complete sequence
          Length = 192176

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 60     gcatagttgatgggaagga 78
              |||||||||||||||||||
Sbjct: 136565 gcatagttgatgggaagga 136583



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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 27      actttaataacggaaatac 45
               |||||||||||||||||||
Sbjct: 2170502 actttaataacggaaatac 2170520



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>emb|BX255962.9| Zebrafish DNA sequence from clone CH211-269C21 in linkage group 25,
             complete sequence
          Length = 151830

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 158   tgttatcactatgacatct 176
             |||||||||||||||||||
Sbjct: 68677 tgttatcactatgacatct 68695



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>emb|BX005083.10| Zebrafish DNA sequence from clone CH211-220F13 in linkage group 2,
             complete sequence
          Length = 212081

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 34    taacggaaatacaattttt 52
             |||||||||||||||||||
Sbjct: 88501 taacggaaatacaattttt 88519



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>emb|CR388011.14| Zebrafish DNA sequence from clone CH211-135J15 in linkage group 19,
             complete sequence
          Length = 163300

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 158   tgttatcactatgacatct 176
             |||||||||||||||||||
Sbjct: 98555 tgttatcactatgacatct 98537



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>emb|BX908398.10| Zebrafish DNA sequence from clone CH211-231A1 in linkage group 22,
             complete sequence
          Length = 118923

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 158   tgttatcactatgacatct 176
             |||||||||||||||||||
Sbjct: 89714 tgttatcactatgacatct 89732



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>emb|BX927137.9| Zebrafish DNA sequence from clone DKEY-30L13 in linkage group 18,
            complete sequence
          Length = 48500

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 158  tgttatcactatgacatct 176
            |||||||||||||||||||
Sbjct: 7139 tgttatcactatgacatct 7157



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>emb|AL928920.5| Zebrafish DNA sequence from clone DKEY-14A7 in linkage group 20,
             complete sequence
          Length = 195351

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 158   tgttatcactatgacatct 176
             |||||||||||||||||||
Sbjct: 85557 tgttatcactatgacatct 85539



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>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete
             sequence
          Length = 271178

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    aataacatgaaacccgcta 116
             |||||||||||||||||||
Sbjct: 69332 aataacatgaaacccgcta 69314



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>emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, complete sequence
          Length = 163121

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 159   gttatcactatgacatctc 177
             |||||||||||||||||||
Sbjct: 32246 gttatcactatgacatctc 32228


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,810,501
Number of Sequences: 3902068
Number of extensions: 1810501
Number of successful extensions: 160257
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 160154
Number of HSP's gapped (non-prelim): 103
length of query: 181
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 159
effective length of database: 17,147,199,772
effective search space: 2726404763748
effective search space used: 2726404763748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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