ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet98f02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence Length = 154528 Score = 48.1 bits (24), Expect = 0.015 Identities = 33/36 (91%) Strand = Plus / Minus Query: 152 tccggcgcgcctccagcgccctcttcaactcctcgc 187 ||||||| |||||||| ||| ||||||||||||||| Sbjct: 82391 tccggcgagcctccagtgccttcttcaactcctcgc 82356
>dbj|AK064834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F19, full insert sequence Length = 1601 Score = 48.1 bits (24), Expect = 0.015 Identities = 33/36 (91%) Strand = Plus / Minus Query: 152 tccggcgcgcctccagcgccctcttcaactcctcgc 187 ||||||| |||||||| ||| ||||||||||||||| Sbjct: 1160 tccggcgagcctccagtgccttcttcaactcctcgc 1125
>dbj|AK062257.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G09, full insert sequence Length = 1508 Score = 48.1 bits (24), Expect = 0.015 Identities = 33/36 (91%) Strand = Plus / Minus Query: 152 tccggcgcgcctccagcgccctcttcaactcctcgc 187 ||||||| |||||||| ||| ||||||||||||||| Sbjct: 1216 tccggcgagcctccagtgccttcttcaactcctcgc 1181
>gb|AC134175.1| Drosophila pseudoobscura FOSMID DPSF1-548A9 (Children's Hospital Oakland Research Institute Drosophila pseudoobscura FOSMID Library) complete sequence Length = 45260 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 197 ctggcgctggcgctggcatcgc 218 |||||||||||||||||||||| Sbjct: 42225 ctggcgctggcgctggcatcgc 42204
>gb|DQ138775.1| Drosophila erecta voucher stock #14021-0224.0 CG13448 gene, partial cds Length = 522 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 caactcctcgcccacctcgtc 197 ||||||||||||||||||||| Sbjct: 123 caactcctcgcccacctcgtc 143
>ref|XM_507291.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0016N23.125 mRNA Length = 1424 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 157 cgcgcctccagcgccctcttcaactcctcgcc 188 |||||||||| |||||||||||||| ||||| Sbjct: 1272 cgcgcctccaatgccctcttcaactcgtcgcc 1241
>ref|XM_483295.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1411 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 157 cgcgcctccagcgccctcttcaactcctcgcc 188 |||||||||| |||||||||||||| ||||| Sbjct: 1258 cgcgcctccaatgccctcttcaactcgtcgcc 1227
>gb|AY273169.1| Rhodobacter capsulatus assimilatory nitrate reduction system, partial sequence Length = 17155 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgtctggcgctggcgctggc 213 |||||||||||||||||||| Sbjct: 441 cgtctggcgctggcgctggc 422
>ref|XR_002916.1| PREDICTED: Mus musculus similar to G1/S-specific cyclin-D3 (LOC670307), mRNA Length = 1903 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 31 gtctggcgctggcgctggca 12
>gb|AC116594.4| Mus musculus BAC clone RP24-127F20 from 19, complete sequence Length = 201360 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ttcaactcaaaatcgaaaaa 93 |||||||||||||||||||| Sbjct: 72336 ttcaactcaaaatcgaaaaa 72317
>gb|AC103645.6| Mus musculus chromosome 19, clone RP24-510J20, complete sequence Length = 209224 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ttcaactcaaaatcgaaaaa 93 |||||||||||||||||||| Sbjct: 26818 ttcaactcaaaatcgaaaaa 26837
>gb|AC139214.12| Mus musculus chromosome 17, clone RP23-345D6, complete sequence Length = 286283 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 183939 gtctggcgctggcgctggca 183920
>gb|AC103574.7| Rattus norvegicus 1 BAC CH230-205C19 (Children's Hospital Oakland Research Institute) complete sequence Length = 199047 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 tactactgaattgctctgtt 69 |||||||||||||||||||| Sbjct: 70882 tactactgaattgctctgtt 70901
>emb|BX530056.17| Zebrafish DNA sequence from clone CH211-208I16 in linkage group 18, complete sequence Length = 235804 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 tgaattgctctgttattatt 75 |||||||||||||||||||| Sbjct: 193840 tgaattgctctgttattatt 193859
>emb|CR752650.10| Zebrafish DNA sequence from clone CH211-140L3 in linkage group 12, complete sequence Length = 108603 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 agctccagatctttagctcaccaa 46 |||||||||| ||||||||||||| Sbjct: 5998 agctccagatatttagctcaccaa 5975
>ref|NM_001760.2| Homo sapiens cyclin D3 (CCND3), mRNA Length = 2095 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 83 gtctggcgctggcgctggca 64
>emb|AL160163.24| Human DNA sequence from clone RP5-973N23 on chromosome 6p12.3-21.2 Contains the TRFP gene for TRF-proximal protein, the BYSL gene for bystin-like protein, the CCDN3 gene for cyclin D3, the 5' end of USP49 gene for ubiquitin specific protease 49 and 3 CpG islands, complete sequence Length = 116506 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 107305 gtctggcgctggcgctggca 107324
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gcgctggcgctggcatcgct 219 |||||||||||||||||||| Sbjct: 1803478 gcgctggcgctggcatcgct 1803459
>gb|BC085763.1| Rattus norvegicus cyclin D3, mRNA (cDNA clone MGC:93643 IMAGE:7189593), complete cds Length = 1941 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 21 gtctggcgctggcgctggca 2
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 agtactgcagcaaccaagag 115 |||||||||||||||||||| Sbjct: 1259118 agtactgcagcaaccaagag 1259137
>emb|CR626223.1| full-length cDNA clone CS0DI005YB13 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1954 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 42 gtctggcgctggcgctggca 23
>gb|AF517525.1| Homo sapiens cyclin D3 (CCND3) gene, complete cds Length = 8987 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 968 gtctggcgctggcgctggca 949
>emb|CR613463.1| full-length cDNA clone CS0DF036YK12 of Fetal brain of Homo sapiens (human) Length = 1995 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 43 gtctggcgctggcgctggca 24
>emb|CR598524.1| full-length cDNA clone CS0DN002YO10 of Adult brain of Homo sapiens (human) Length = 1637 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 41 gtctggcgctggcgctggca 22
>gb|AC096747.3| Homo sapiens BAC clone RP11-396I22 from 4, complete sequence Length = 206789 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aactcaaaatcgaaaaatta 96 |||||||||||||||||||| Sbjct: 122758 aactcaaaatcgaaaaatta 122777
>dbj|AK165191.1| Mus musculus 12 days embryo whole body cDNA, RIKEN full-length enriched library, clone:E970027F08 product:cyclin D3, full insert sequence Length = 3860 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 130 gtctggcgctggcgctggca 111
>dbj|AK159503.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420022A14 product:cyclin D3, full insert sequence Length = 1900 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 23 gtctggcgctggcgctggca 4
>dbj|AK168290.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730081N04 product:cyclin D3, full insert sequence Length = 1902 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 25 gtctggcgctggcgctggca 6
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 157 cgcgcctccagcgccctcttcaactcctcgcc 188 |||||||||| |||||||||||||| ||||| Sbjct: 25325921 cgcgcctccaatgccctcttcaactcgtcgcc 25325952
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tggcgctggcgctggcatcg 217 |||||||||||||||||||| Sbjct: 7643668 tggcgctggcgctggcatcg 7643649
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 157 cgcgcctccagcgccctcttcaactcctcgcc 188 |||||||||| |||||||||||||| ||||| Sbjct: 101106 cgcgcctccaatgccctcttcaactcgtcgcc 101137
>dbj|AK106031.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-D03, full insert sequence Length = 1411 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 157 cgcgcctccagcgccctcttcaactcctcgcc 188 |||||||||| |||||||||||||| ||||| Sbjct: 1258 cgcgcctccaatgccctcttcaactcgtcgcc 1227
>dbj|AK072063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110D22, full insert sequence Length = 1424 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 157 cgcgcctccagcgccctcttcaactcctcgcc 188 |||||||||| |||||||||||||| ||||| Sbjct: 1272 cgcgcctccaatgccctcttcaactcgtcgcc 1241
>gb|AY110541.1| Zea mays CL4825_1 mRNA sequence Length = 837 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ctggcgctggcgctggcatcgctg 220 |||||||||||||||||| ||||| Sbjct: 111 ctggcgctggcgctggcagcgctg 134
>gb|U43844.1|MMU43844 Mus musculus cyclin D3 gene, complete cds Length = 8267 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 1701 gtctggcgctggcgctggca 1682
>gb|U47285.1|HSU47285 Human cyclin D3 gene, promoter region Length = 1023 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 936 gtctggcgctggcgctggca 917
>gb|AC163709.3| Gallus gallus BAC clone CH261-60F22 from chromosome ul, complete sequence Length = 210984 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 gctccttcccaccgccccga 255 |||||||||||||||||||| Sbjct: 98880 gctccttcccaccgccccga 98899
>gb|U49935.1|RNU49935 Rattus norvegicus cyclin D3 gene, partial cds Length = 3325 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 2785 gtctggcgctggcgctggca 2766
>emb|AL807811.9| Mouse DNA sequence from clone RP23-247I1 on chromosome 4, complete sequence Length = 249021 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 222679 gtctggcgctggcgctggca 222698
>gb|M92287.1|HUMCYCD3A Homo sapiens cyclin D3 (CCND3) mRNA, complete cds Length = 2042 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtctggcgctggcgctggca 214 |||||||||||||||||||| Sbjct: 83 gtctggcgctggcgctggca 64
>gb|AF158602.2| Zantedeschia aethiopica monodehydroascorbate reductase (MDAR) mRNA, partial cds; nuclear gene for chloroplast product Length = 1784 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ctccggcgcgcctccagcgccctc 174 ||||||||||||||| |||||||| Sbjct: 4 ctccggcgcgcctcccgcgccctc 27 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,199,362 Number of Sequences: 3902068 Number of extensions: 2199362 Number of successful extensions: 43257 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43101 Number of HSP's gapped (non-prelim): 156 length of query: 282 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 260 effective length of database: 17,147,199,772 effective search space: 4458271940720 effective search space used: 4458271940720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
