Clone Name | rbaet98f01 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/my... | 32 | 0.34 | 2 | SET4_YEAST (P42948) SET domain protein 4 | 32 | 0.34 | 3 | SC5A3_CANFA (P31637) Sodium/myo-inositol cotransporter (Na(+)/my... | 31 | 0.99 | 4 | SC5A3_BOVIN (P53793) Sodium/myo-inositol cotransporter (Na(+)/my... | 31 | 0.99 | 5 | PHF8_HUMAN (Q9UPP1) PHD finger protein 8 | 28 | 6.4 | 6 | FAS_YEAST (P53848) Folic acid synthesis protein FOL1 [Includes: ... | 28 | 8.4 |
---|
>SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol| cotransporter) Length = 718 Score = 32.3 bits (72), Expect = 0.34 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Frame = +3 Query: 15 IIGTPDASNVIQMHKM--TSNLNESPKHRQQIMSSLTGDRTTMLRNSIQEDRPW--MSRG 182 ++ +PD ++++ + + T++ N SPK + MLRN ED PW G Sbjct: 218 MLASPDVTSILLTYNLSNTNSCNVSPKK----------EALKMLRNPTDEDVPWPGFILG 267 Query: 183 RNPMLCWSW 209 + P W W Sbjct: 268 QTPASVWYW 276
>SET4_YEAST (P42948) SET domain protein 4| Length = 560 Score = 32.3 bits (72), Expect = 0.34 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = +3 Query: 6 RFPIIGTPDASNVIQMHKMTSNLNESPKHRQQIMSSLTGDRTTMLRNSIQEDR 164 +F I T ASN Q + +N+ E PK RQ ++ T + + +R +++++ Sbjct: 234 QFSSIVTTSASNTNQHQQSVNNIEEQPKKRQLHYTAPTTENSNSIRKKLRQEK 286
>SC5A3_CANFA (P31637) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol| cotransporter) Length = 718 Score = 30.8 bits (68), Expect = 0.99 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = +3 Query: 15 IIGTPDASNVIQMHKMTSNLNESPKHRQQIMSSLTGDRTTMLRNSIQEDRPW--MSRGRN 188 ++ +P+ ++++ + + SN N H ++ D MLRN ED PW G+ Sbjct: 218 MLASPNVTSILLTYNL-SNTNSCNVHPKK-------DALKMLRNPTDEDVPWPGFVLGQT 269 Query: 189 PMLCWSW 209 P W W Sbjct: 270 PASVWYW 276
>SC5A3_BOVIN (P53793) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol| cotransporter) Length = 718 Score = 30.8 bits (68), Expect = 0.99 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = +3 Query: 15 IIGTPDASNVIQMHKMTSNLNESPKHRQQIMSSLTGDRTTMLRNSIQEDRPW--MSRGRN 188 ++ +P+ ++++ + + SN N H ++ D MLRN ED PW G+ Sbjct: 218 MLASPNVTSILLTYNL-SNTNSCNVHPKK-------DALKMLRNPTDEDVPWPGFILGQT 269 Query: 189 PMLCWSW 209 P W W Sbjct: 270 PASVWYW 276
>PHF8_HUMAN (Q9UPP1) PHD finger protein 8| Length = 1060 Score = 28.1 bits (61), Expect = 6.4 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -1 Query: 180 LGTSMAGPPV*SSEAWWSGRRSVSS*FADDVLGFHSNS 67 L +S + P S +AWW+G + SS + LG SNS Sbjct: 767 LQSSSSSPATSSLQAWWTGGQDRSSGSSSSGLGTVSNS 804
>FAS_YEAST (P53848) Folic acid synthesis protein FOL1 [Includes:| Dihydroneopterin aldolase (EC 4.1.2.25) (DHNA) (FASA) (FASB); 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) (7,8-dihydro-6-hydroxymethylpterin-pyrophosphok Length = 824 Score = 27.7 bits (60), Expect = 8.4 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +3 Query: 66 SNLNESPKHRQQIMSSLTGDRTTMLRN--SIQEDRPWMSRGRNPML 197 SN+ + KH Q + L+ ++T LRN SI E P + + P + Sbjct: 306 SNIGDRFKHIQMALQLLSREKTVKLRNISSIFESEPMYFKDQTPFM 351 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,150,449 Number of Sequences: 219361 Number of extensions: 691176 Number of successful extensions: 1885 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1857 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1885 length of database: 80,573,946 effective HSP length: 50 effective length of database: 69,605,896 effective search space used: 1670541504 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)