Clone Name | rbaet98e01 |
---|---|
Clone Library Name | barley_pub |
>emb|BX640588.5| Zebrafish DNA sequence from clone DKEY-110L7 in linkage group 6, complete sequence Length = 117506 Score = 42.1 bits (21), Expect = 0.29 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ttcaactactttcaaataagtaatt 29 |||||||| |||||||||||||||| Sbjct: 6178 ttcaactaatttcaaataagtaatt 6154
>emb|BX119974.5| Zebrafish DNA sequence from clone DKEY-237J17 in linkage group 6, complete sequence Length = 213058 Score = 42.1 bits (21), Expect = 0.29 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ttcaactactttcaaataagtaatt 29 |||||||| |||||||||||||||| Sbjct: 125472 ttcaactaatttcaaataagtaatt 125448
>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full insert sequence Length = 1094 Score = 42.1 bits (21), Expect = 0.29 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 gcgcgaaattatattttcacg 102 ||||||||||||||||||||| Sbjct: 1094 gcgcgaaattatattttcacg 1074
>gb|AC126448.3| Mus musculus BAC clone RP23-359M2 from chromosome 17, complete sequence Length = 207537 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tttgcaaatatgaaaattac 68 |||||||||||||||||||| Sbjct: 189983 tttgcaaatatgaaaattac 190002
>gb|AC122803.4| Mus musculus BAC clone RP23-292K9 from 17, complete sequence Length = 149990 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tttgcaaatatgaaaattac 68 |||||||||||||||||||| Sbjct: 40695 tttgcaaatatgaaaattac 40714
>emb|AL163218.2|HS21C018 Homo sapiens chromosome 21 segment HS21C018 Length = 340000 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 aaataagtaattactctagg 37 |||||||||||||||||||| Sbjct: 330114 aaataagtaattactctagg 330133
>gb|AC100868.2| Homo sapiens chromosome 8, clone RP11-246K8, complete sequence Length = 160939 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ttcaaataagtaattactct 34 |||||||||||||||||||| Sbjct: 122959 ttcaaataagtaattactct 122978
>gb|AC104656.3| Homo sapiens BAC clone RP11-547J14 from 4, complete sequence Length = 175350 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 gctttgcaaatatgaaaatt 66 |||||||||||||||||||| Sbjct: 104796 gctttgcaaatatgaaaatt 104815
>ref|NG_002199.1| Homo sapiens olfactory receptor, family 51, subfamily A, member 1 pseudogene (OR51A1P) on chromosome 11 Length = 1265 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 gctttgcaaatatgaaaatt 66 |||||||||||||||||||| Sbjct: 1034 gctttgcaaatatgaaaatt 1053
>dbj|BS000045.1| Pan troglodytes chromosome 22 clone:RP43-179P23, map 22, complete sequences Length = 179114 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 aaataagtaattactctagg 37 |||||||||||||||||||| Sbjct: 132703 aaataagtaattactctagg 132722
>gb|AC167701.2| Reniera sp. JGI-2005 clone JGIBAYC-9B8, complete sequence Length = 41777 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tactttcaaataagtaatta 30 |||||||||||||||||||| Sbjct: 38626 tactttcaaataagtaatta 38607
>emb|X81445.2|HSHPFH6 Homo spaiens HPFH6OR gene for olfactory receptor Length = 3157 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 gctttgcaaatatgaaaatt 66 |||||||||||||||||||| Sbjct: 2452 gctttgcaaatatgaaaatt 2471
>dbj|AP001537.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B749F18, LL56-APP region, complete sequence Length = 81450 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 aaataagtaattactctagg 37 |||||||||||||||||||| Sbjct: 66415 aaataagtaattactctagg 66434
>gb|AC163107.3| Mus musculus BAC clone RP23-156A21 from chromosome 16, complete sequence Length = 221691 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 ttcaactactttcaaataa 23 ||||||||||||||||||| Sbjct: 148209 ttcaactactttcaaataa 148191
>emb|CR931792.9| Zebrafish DNA sequence from clone DKEY-180L1 in linkage group 13, complete sequence Length = 163673 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 caaatatgaaaattacacg 71 ||||||||||||||||||| Sbjct: 28131 caaatatgaaaattacacg 28113
>gb|AC090691.16| Homo sapiens chromosome 8, clone RP11-338B22, complete sequence Length = 180766 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 gctttgcaaatatgaaaat 65 ||||||||||||||||||| Sbjct: 124697 gctttgcaaatatgaaaat 124679
>emb|CR847826.13| Zebrafish DNA sequence from clone CH211-204D2 in linkage group 8, complete sequence Length = 150519 Score = 38.2 bits (19), Expect = 4.5 Identities = 29/31 (93%), Gaps = 1/31 (3%) Strand = Plus / Minus Query: 19 aataagtaattactctaggtaggtagtggct 49 ||||| ||||||||||| ||||||||||||| Sbjct: 42507 aataaataattactcta-gtaggtagtggct 42478
>gb|AC108838.20| Mus musculus chromosome 18, clone RP23-326N14, complete sequence Length = 173862 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 ttcaactactttcaaataa 23 ||||||||||||||||||| Sbjct: 125614 ttcaactactttcaaataa 125632
>gb|AC100797.4| Homo sapiens chromosome 8, clone RP11-43A14, complete sequence Length = 200340 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 gctttgcaaatatgaaaat 65 ||||||||||||||||||| Sbjct: 1659 gctttgcaaatatgaaaat 1641
>gb|AY091933.1| Macaca sp. secretogranin II gene, partial cds Length = 1017 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 14 tttcaaataagtaattact 32 ||||||||||||||||||| Sbjct: 888 tttcaaataagtaattact 870
>emb|AL133479.11| Human DNA sequence from clone RP11-299F23 on chromosome 9p23-24.3, complete sequence Length = 167497 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 tgcaaatatgaaaattaca 69 ||||||||||||||||||| Sbjct: 10842 tgcaaatatgaaaattaca 10860
>emb|CR380947.1| Candida glabrata strain CBS138 chromosome A complete sequence Length = 485192 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 ggtttgcgcgaaattatat 95 ||||||||||||||||||| Sbjct: 177753 ggtttgcgcgaaattatat 177735
>gb|AC119041.6| Homo sapiens X BAC RP11-585K14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 100000 Score = 38.2 bits (19), Expect = 4.5 Identities = 25/27 (92%) Strand = Plus / Minus Query: 2 gcattcaactactttcaaataagtaat 28 ||||||| |||||| |||||||||||| Sbjct: 88163 gcattcatctacttacaaataagtaat 88137
>gb|AC093601.4| Homo sapiens BAC clone RP11-338P22 from 4, complete sequence Length = 118129 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 cattcaactactttcaaat 21 ||||||||||||||||||| Sbjct: 36329 cattcaactactttcaaat 36311
>gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179854 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 ttcaactactttcaaataa 23 ||||||||||||||||||| Sbjct: 79205 ttcaactactttcaaataa 79223
>dbj|AB169594.1| Macaca fascicularis brain cDNA, clone: QnpA-15483, similar to human secretogranin II (chromogranin C) (SCG2), mRNA, RefSeq: NM_003469.2 Length = 2385 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 14 tttcaaataagtaattact 32 ||||||||||||||||||| Sbjct: 1036 tttcaaataagtaattact 1018
>gb|AC037423.16|AC037423 Homo sapiens chromosome 9 clone RP11-287F15, complete sequence Length = 171029 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 tgcaaatatgaaaattaca 69 ||||||||||||||||||| Sbjct: 76043 tgcaaatatgaaaattaca 76061
>gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205164 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 caactactttcaaataagt 25 ||||||||||||||||||| Sbjct: 152911 caactactttcaaataagt 152893
>emb|AL135818.3|CNS01DVH Human chromosome 14 DNA sequence BAC C-2547L24 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 203777 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 49 tttgcaaatatgaaaatta 67 ||||||||||||||||||| Sbjct: 136693 tttgcaaatatgaaaatta 136711
>emb|AL133153.3|CNS01DU3 Human chromosome 14 DNA sequence BAC R-895M11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 231490 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 49 tttgcaaatatgaaaatta 67 ||||||||||||||||||| Sbjct: 48243 tttgcaaatatgaaaatta 48261
>gb|AC141482.4| Mus musculus BAC clone RP23-159C3 from 16, complete sequence Length = 180832 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 ttcaactactttcaaataa 23 ||||||||||||||||||| Sbjct: 135402 ttcaactactttcaaataa 135420 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,253,350 Number of Sequences: 3902068 Number of extensions: 1253350 Number of successful extensions: 95855 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 95784 Number of HSP's gapped (non-prelim): 72 length of query: 102 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 81 effective length of database: 17,151,101,840 effective search space: 1389239249040 effective search space used: 1389239249040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)