ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX640588.5| Zebrafish DNA sequence from clone DKEY-110L7 in ... 42 0.29
2emb|BX119974.5| Zebrafish DNA sequence from clone DKEY-237J17 in... 42 0.29
3dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.29
4gb|AC126448.3| Mus musculus BAC clone RP23-359M2 from chromosome... 40 1.1
5gb|AC122803.4| Mus musculus BAC clone RP23-292K9 from 17, comple... 40 1.1
6emb|AL163218.2|HS21C018 Homo sapiens chromosome 21 segment HS21C018 40 1.1
7gb|AC100868.2| Homo sapiens chromosome 8, clone RP11-246K8, comp... 40 1.1
8gb|AC104656.3| Homo sapiens BAC clone RP11-547J14 from 4, comple... 40 1.1
9ref|NG_002199.1| Homo sapiens olfactory receptor, family 51, sub... 40 1.1
10dbj|BS000045.1| Pan troglodytes chromosome 22 clone:RP43-179P23,... 40 1.1
11gb|AC167701.2| Reniera sp. JGI-2005 clone JGIBAYC-9B8, complete ... 40 1.1
12emb|X81445.2|HSHPFH6 Homo spaiens HPFH6OR gene for olfactory rec... 40 1.1
13dbj|AP001537.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 1.1
14gb|AC163107.3| Mus musculus BAC clone RP23-156A21 from chromosom... 38 4.5
15emb|CR931792.9| Zebrafish DNA sequence from clone DKEY-180L1 in ... 38 4.5
16gb|AC090691.16| Homo sapiens chromosome 8, clone RP11-338B22, co... 38 4.5
17emb|CR847826.13| Zebrafish DNA sequence from clone CH211-204D2 i... 38 4.5
18gb|AC108838.20| Mus musculus chromosome 18, clone RP23-326N14, c... 38 4.5
19gb|AC100797.4| Homo sapiens chromosome 8, clone RP11-43A14, comp... 38 4.5
20gb|AY091933.1| Macaca sp. secretogranin II gene, partial cds 38 4.5
21emb|AL133479.11| Human DNA sequence from clone RP11-299F23 on ch... 38 4.5
22emb|CR380947.1| Candida glabrata strain CBS138 chromosome A comp... 38 4.5
23gb|AC119041.6| Homo sapiens X BAC RP11-585K14 (Roswell Park Canc... 38 4.5
24gb|AC093601.4| Homo sapiens BAC clone RP11-338P22 from 4, comple... 38 4.5
25gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Par... 38 4.5
26dbj|AB169594.1| Macaca fascicularis brain cDNA, clone: QnpA-1548... 38 4.5
27gb|AC037423.16|AC037423 Homo sapiens chromosome 9 clone RP11-287... 38 4.5
28gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Canc... 38 4.5
29emb|AL135818.3|CNS01DVH Human chromosome 14 DNA sequence BAC C-2... 38 4.5
30emb|AL133153.3|CNS01DU3 Human chromosome 14 DNA sequence BAC R-8... 38 4.5
31gb|AC141482.4| Mus musculus BAC clone RP23-159C3 from 16, comple... 38 4.5

>emb|BX640588.5| Zebrafish DNA sequence from clone DKEY-110L7 in linkage group 6,
            complete sequence
          Length = 117506

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 5    ttcaactactttcaaataagtaatt 29
            |||||||| ||||||||||||||||
Sbjct: 6178 ttcaactaatttcaaataagtaatt 6154



to top

>emb|BX119974.5| Zebrafish DNA sequence from clone DKEY-237J17 in linkage group 6,
              complete sequence
          Length = 213058

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 5      ttcaactactttcaaataagtaatt 29
              |||||||| ||||||||||||||||
Sbjct: 125472 ttcaactaatttcaaataagtaatt 125448



to top

>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full
            insert sequence
          Length = 1094

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 82   gcgcgaaattatattttcacg 102
            |||||||||||||||||||||
Sbjct: 1094 gcgcgaaattatattttcacg 1074



to top

>gb|AC126448.3| Mus musculus BAC clone RP23-359M2 from chromosome 17, complete sequence
          Length = 207537

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     tttgcaaatatgaaaattac 68
              ||||||||||||||||||||
Sbjct: 189983 tttgcaaatatgaaaattac 190002



to top

>gb|AC122803.4| Mus musculus BAC clone RP23-292K9 from 17, complete sequence
          Length = 149990

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    tttgcaaatatgaaaattac 68
             ||||||||||||||||||||
Sbjct: 40695 tttgcaaatatgaaaattac 40714



to top

>emb|AL163218.2|HS21C018 Homo sapiens chromosome 21 segment HS21C018
          Length = 340000

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     aaataagtaattactctagg 37
              ||||||||||||||||||||
Sbjct: 330114 aaataagtaattactctagg 330133



to top

>gb|AC100868.2| Homo sapiens chromosome 8, clone RP11-246K8, complete sequence
          Length = 160939

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     ttcaaataagtaattactct 34
              ||||||||||||||||||||
Sbjct: 122959 ttcaaataagtaattactct 122978



to top

>gb|AC104656.3| Homo sapiens BAC clone RP11-547J14 from 4, complete sequence
          Length = 175350

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     gctttgcaaatatgaaaatt 66
              ||||||||||||||||||||
Sbjct: 104796 gctttgcaaatatgaaaatt 104815



to top

>ref|NG_002199.1| Homo sapiens olfactory receptor, family 51, subfamily A, member 1
            pseudogene (OR51A1P) on chromosome 11
          Length = 1265

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 47   gctttgcaaatatgaaaatt 66
            ||||||||||||||||||||
Sbjct: 1034 gctttgcaaatatgaaaatt 1053



to top

>dbj|BS000045.1| Pan troglodytes chromosome 22 clone:RP43-179P23, map 22, complete
              sequences
          Length = 179114

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     aaataagtaattactctagg 37
              ||||||||||||||||||||
Sbjct: 132703 aaataagtaattactctagg 132722



to top

>gb|AC167701.2| Reniera sp. JGI-2005 clone JGIBAYC-9B8, complete sequence
          Length = 41777

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    tactttcaaataagtaatta 30
             ||||||||||||||||||||
Sbjct: 38626 tactttcaaataagtaatta 38607



to top

>emb|X81445.2|HSHPFH6 Homo spaiens HPFH6OR gene for olfactory receptor
          Length = 3157

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 47   gctttgcaaatatgaaaatt 66
            ||||||||||||||||||||
Sbjct: 2452 gctttgcaaatatgaaaatt 2471



to top

>dbj|AP001537.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B749F18,
             LL56-APP region, complete sequence
          Length = 81450

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    aaataagtaattactctagg 37
             ||||||||||||||||||||
Sbjct: 66415 aaataagtaattactctagg 66434



to top

>gb|AC163107.3| Mus musculus BAC clone RP23-156A21 from chromosome 16, complete sequence
          Length = 221691

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      ttcaactactttcaaataa 23
              |||||||||||||||||||
Sbjct: 148209 ttcaactactttcaaataa 148191



to top

>emb|CR931792.9| Zebrafish DNA sequence from clone DKEY-180L1 in linkage group 13,
             complete sequence
          Length = 163673

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    caaatatgaaaattacacg 71
             |||||||||||||||||||
Sbjct: 28131 caaatatgaaaattacacg 28113



to top

>gb|AC090691.16| Homo sapiens chromosome 8, clone RP11-338B22, complete sequence
          Length = 180766

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     gctttgcaaatatgaaaat 65
              |||||||||||||||||||
Sbjct: 124697 gctttgcaaatatgaaaat 124679



to top

>emb|CR847826.13| Zebrafish DNA sequence from clone CH211-204D2 in linkage group 8,
             complete sequence
          Length = 150519

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 29/31 (93%), Gaps = 1/31 (3%)
 Strand = Plus / Minus

                                            
Query: 19    aataagtaattactctaggtaggtagtggct 49
             ||||| ||||||||||| |||||||||||||
Sbjct: 42507 aataaataattactcta-gtaggtagtggct 42478



to top

>gb|AC108838.20| Mus musculus chromosome 18, clone RP23-326N14, complete sequence
          Length = 173862

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 5      ttcaactactttcaaataa 23
              |||||||||||||||||||
Sbjct: 125614 ttcaactactttcaaataa 125632



to top

>gb|AC100797.4| Homo sapiens chromosome 8, clone RP11-43A14, complete sequence
          Length = 200340

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 47   gctttgcaaatatgaaaat 65
            |||||||||||||||||||
Sbjct: 1659 gctttgcaaatatgaaaat 1641



to top

>gb|AY091933.1| Macaca sp. secretogranin II gene, partial cds
          Length = 1017

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  tttcaaataagtaattact 32
           |||||||||||||||||||
Sbjct: 888 tttcaaataagtaattact 870



to top

>emb|AL133479.11| Human DNA sequence from clone RP11-299F23 on chromosome 9p23-24.3,
             complete sequence
          Length = 167497

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    tgcaaatatgaaaattaca 69
             |||||||||||||||||||
Sbjct: 10842 tgcaaatatgaaaattaca 10860



to top

>emb|CR380947.1| Candida glabrata strain CBS138 chromosome A complete sequence
          Length = 485192

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 77     ggtttgcgcgaaattatat 95
              |||||||||||||||||||
Sbjct: 177753 ggtttgcgcgaaattatat 177735



to top

>gb|AC119041.6| Homo sapiens X BAC RP11-585K14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 100000

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 2     gcattcaactactttcaaataagtaat 28
             ||||||| |||||| ||||||||||||
Sbjct: 88163 gcattcatctacttacaaataagtaat 88137



to top

>gb|AC093601.4| Homo sapiens BAC clone RP11-338P22 from 4, complete sequence
          Length = 118129

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     cattcaactactttcaaat 21
             |||||||||||||||||||
Sbjct: 36329 cattcaactactttcaaat 36311



to top

>gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 179854

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     ttcaactactttcaaataa 23
             |||||||||||||||||||
Sbjct: 79205 ttcaactactttcaaataa 79223



to top

>dbj|AB169594.1| Macaca fascicularis brain cDNA, clone: QnpA-15483, similar to human
            secretogranin II (chromogranin C) (SCG2), mRNA, RefSeq:
            NM_003469.2
          Length = 2385

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 14   tttcaaataagtaattact 32
            |||||||||||||||||||
Sbjct: 1036 tttcaaataagtaattact 1018



to top

>gb|AC037423.16|AC037423 Homo sapiens chromosome 9 clone RP11-287F15, complete sequence
          Length = 171029

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    tgcaaatatgaaaattaca 69
             |||||||||||||||||||
Sbjct: 76043 tgcaaatatgaaaattaca 76061



to top

>gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205164

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 7      caactactttcaaataagt 25
              |||||||||||||||||||
Sbjct: 152911 caactactttcaaataagt 152893



to top

>emb|AL135818.3|CNS01DVH Human chromosome 14 DNA sequence BAC C-2547L24 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 203777

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 49     tttgcaaatatgaaaatta 67
              |||||||||||||||||||
Sbjct: 136693 tttgcaaatatgaaaatta 136711



to top

>emb|AL133153.3|CNS01DU3 Human chromosome 14 DNA sequence BAC R-895M11 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 231490

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 49    tttgcaaatatgaaaatta 67
             |||||||||||||||||||
Sbjct: 48243 tttgcaaatatgaaaatta 48261



to top

>gb|AC141482.4| Mus musculus BAC clone RP23-159C3 from 16, complete sequence
          Length = 180832

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 5      ttcaactactttcaaataa 23
              |||||||||||||||||||
Sbjct: 135402 ttcaactactttcaaataa 135420


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,253,350
Number of Sequences: 3902068
Number of extensions: 1253350
Number of successful extensions: 95855
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 95784
Number of HSP's gapped (non-prelim): 72
length of query: 102
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 81
effective length of database: 17,151,101,840
effective search space: 1389239249040
effective search space used: 1389239249040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top