>CRTC_CHLTE (Q9F723) Hydroxyneurosporene dehydrogenase (EC 1.-.-.-)|
           (Hydroxyneurosporene synthase)
          Length = 382

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 228 GTSLFRRSMDSWWWLSAPSRRCAAFFYLL 142
           GT     S+D W+W    SRRC   +Y++
Sbjct: 207 GTVPMYESIDRWYWGRTFSRRCDLIYYVV 235

>NU4M_PONPY (P03908) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 459

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
 Frame = -2

Query: 246 IFLIIFGTSLFRRSMDSWWWLSAPSRRCAAFFYLLATLSSSL----KNTHHGETLQTHVL 79
           +F I+F T+L    +    W + P R  A  ++L  TL  SL      TH   TL +  +
Sbjct: 117 MFYILFETTLIPTLIIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALTHTHNTLGSLNI 176

Query: 78  RKNTKALSRCSLPWLS--QWLHFSLAF 4
              T      +  W +   WL +++AF
Sbjct: 177 MLLTLTARELTDSWSNSLMWLAYTMAF 203

>DNAJ_HELPJ (Q9ZJQ2) Chaperone protein dnaJ|
          Length = 369

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 8   AREKCSHCDSQGREHLDKAFVFFLSTC 88
           A E C  C+ QG+  + + F+ F  TC
Sbjct: 155 ALENCKQCNGQGQVFMRQGFMSFAQTC 181

>PYRG_BORBU (O51522) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 533

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 3   GMQEKNVAIVIAKEESISTKPLCSSLVHVFVEFLRGVC 116
           G + K +AI  A+E +I    +C  L    +EF R VC
Sbjct: 360 GYEGKIMAIKYARENNIPFLGICLGLQLAVIEFARNVC 397

>RUMB_YERPS (Q66CN7) 23S rRNA (uracil-5-)-methyltransferase rumB (EC 2.1.1.-)|
           (23S rRNA(M-5-U747)-methyltransferase)
          Length = 376

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 120 KNTHHGETLQTHVLRKNTK-ALSRCSLPWLSQWL 22
           ++T++GE +   VLR  TK A    +LPWL Q L
Sbjct: 129 ESTYNGELMLRFVLRSETKLAQLIAALPWLQQQL 162

>RUMB_YERPE (Q8ZGG1) 23S rRNA (uracil-5-)-methyltransferase rumB (EC 2.1.1.-)|
           (23S rRNA(M-5-U747)-methyltransferase)
          Length = 376

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 120 KNTHHGETLQTHVLRKNTK-ALSRCSLPWLSQWL 22
           ++T++GE +   VLR  TK A    +LPWL Q L
Sbjct: 129 ESTYNGELMLRFVLRSETKLAQLIAALPWLQQQL 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,628,869
Number of Sequences: 219361
Number of extensions: 442478
Number of successful extensions: 1557
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)