ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full... 141 2e-30
2gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete... 74 4e-10
3gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
6gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 58 2e-05
7dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
8dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
9gb|AY107519.1| Zea mays PCO078033 mRNA sequence 56 1e-04
10gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
11gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
12gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
13gb|AC121845.3| Mus musculus BAC clone RP24-82B23 from 5, complet... 48 0.024
14emb|AL354682.22| Human DNA sequence from clone RP11-282L14 on ch... 42 1.5
15gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, co... 42 1.5
16dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 42 1.5
17gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, compl... 42 1.5
18gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D... 42 1.5
19gb|AC168116.3| Mus musculus BAC clone RP24-108N24 from chromosom... 40 5.8
20ref|XM_506587.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.8
21gb|AC117648.14| Mus musculus, clone RP23-254P23, complete sequence 40 5.8
22emb|AL591622.6| Human DNA sequence from clone RP11-141L16 on chr... 40 5.8
23emb|AL136128.9| Human DNA sequence from clone RP1-84N20 on chrom... 40 5.8
24gb|AC137767.16| Homo sapiens 12 BAC RP13-942N8 (Roswell Park Can... 40 5.8
25gb|AC137631.2| Homo sapiens 12 BAC RP11-1018F11 (Roswell Park Ca... 40 5.8
26emb|BX546473.10| Zebrafish DNA sequence from clone DKEYP-51F2 in... 40 5.8
27gb|AC018563.7| Homo sapiens, clone RP11-122D10, complete sequence 40 5.8
28gb|AC019016.7| Homo sapiens chromosome 15, clone RP11-201P10, co... 40 5.8
29dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
30dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
31gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complet... 40 5.8
32dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
33dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
34dbj|AK108661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
35dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
36gb|AY103669.1| Zea mays PCO073521 mRNA sequence 40 5.8
37gb|AC161367.4| Mus musculus BAC clone RP23-450F3 from chromosome... 40 5.8
38gb|AF033496.1|AF033496 Zea mays herbicide safener binding protei... 40 5.8
39gb|AC153843.6| Mus musculus 10 BAC RP23-273P15 (Roswell Park Can... 40 5.8
40emb|AL355432.7|HS56F10 Homo sapiens chromosome 9 BAC RP11-56F10,... 40 5.8 
>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score =  141 bits (71), Expect = 2e-30
 Identities = 122/139 (87%)
 Strand = Plus / Minus

                                                                       
Query: 287 cttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgc 346
           ||||||||||||||||||||| |||||||   || |||||||||||||||||||||| ||
Sbjct: 513 cttatggatagacctcgatgacacctcgatggccaagtttcttgacaatcttatagttgc 454

                                                                       
Query: 347 taaatcctgcttttgtaaagattgtgctccagtcattttcatctcgttgccgtccttttg 406
           |||| |||||||| |||||||| |||||||| || |||||||| |||||||||||| | |
Sbjct: 453 taaaccctgctttcgtaaagatcgtgctccactccttttcatcccgttgccgtcctctgg 394

                              
Query: 407 tacataccaacatgagcat 425
           ||||||  ||||| |||||
Sbjct: 393 tacatatgaacatcagcat 375
to top
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                        
Query: 295  tagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatcct 354
            ||||||||||| | |||||| || ||||||||||||||||| || ||||||||||| |||
Sbjct: 1132 tagacctcgataacacctcgtgcacccagtttcttgacaattttgtagtcgctaaaccct 1073

                 
Query: 355  gcttt 359
            |||||
Sbjct: 1072 gcttt 1068
to top
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0005P21, complete sequence
          Length = 147381

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                         
Query: 293   gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 352
             |||||||||||| || | ||||||| || |||||||| |||||||||||||| || ||||
Sbjct: 64473 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 64414

                  
Query: 353   ctgct 357
             |||||
Sbjct: 64413 ctgct 64409



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                          
Query: 283    caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 342
              |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 123169 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 123110

                               
Query: 343    tcgctaaatcctgcttt 359
              ||  | |||||||||||
Sbjct: 123109 tcattgaatcctgcttt 123093
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 293      gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 352
                |||||||||||| || | ||||||| || |||||||| |||||||||||||| || ||||
Sbjct: 11549315 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11549374

                     
Query: 353      ctgct 357
                |||||
Sbjct: 11549375 ctgct 11549379



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                            
Query: 283      caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 342
                |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 11490619 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11490678

                                 
Query: 343      tcgctaaatcctgcttt 359
                ||  | |||||||||||
Sbjct: 11490679 tcattgaatcctgcttt 11490695



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                            
Query: 289      tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 348
                ||||| |||||||| | ||  |||||||||||||||||||| ||||| || ||||| || 
Sbjct: 11353886 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11353945

                           
Query: 349      aatcctgcttt 359
                || ||||||||
Sbjct: 11353946 aagcctgcttt 11353956



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                           
Query: 284     aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 343
               ||||| |||||||||||||||  | | |||||||||| || |||||| | ||||||||||
Sbjct: 7137521 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 7137580

                         
Query: 344     cgctaaatcc 353
               | || |||||
Sbjct: 7137581 cactgaatcc 7137590



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                            
Query: 293      gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 352
                |||||||||| |  ||| ||||||||||||||| ||| |||||||||||||| || || |
Sbjct: 11352004 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 11352062

                     
Query: 353      ctgct 357
                |||||
Sbjct: 11352063 ctgct 11352067



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 292      ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 344
                ||||||||||| |||| ||  |||| ||||| |||||| |||||||| |||||
Sbjct: 11294531 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11294583



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 292      ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 343
                ||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 11329598 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 11329649
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 293      gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 352
                |||||||||||| || | ||||||| || |||||||| |||||||||||||| || ||||
Sbjct: 11628504 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11628563

                     
Query: 353      ctgct 357
                |||||
Sbjct: 11628564 ctgct 11628568



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                            
Query: 283      caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 342
                |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 11569808 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11569867

                                 
Query: 343      tcgctaaatcctgcttt 359
                ||  | |||||||||||
Sbjct: 11569868 tcattgaatcctgcttt 11569884



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                            
Query: 289      tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 348
                ||||| |||||||| | ||  |||||||||||||||||||| ||||| || ||||| || 
Sbjct: 11433075 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11433134

                           
Query: 349      aatcctgcttt 359
                || ||||||||
Sbjct: 11433135 aagcctgcttt 11433145



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                           
Query: 284     aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 343
               ||||| |||||||||||||||  | | |||||||||| || |||||| | ||||||||||
Sbjct: 7203492 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 7203551

                         
Query: 344     cgctaaatcc 353
               | || |||||
Sbjct: 7203552 cactgaatcc 7203561



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                            
Query: 293      gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 352
                |||||||||| |  ||| ||||||||||||||| ||| |||||||||||||| || || |
Sbjct: 11431193 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 11431251

                     
Query: 353      ctgct 357
                |||||
Sbjct: 11431252 ctgct 11431256



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 292      ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 344
                ||||||||||| |||| ||  |||| ||||| |||||| |||||||| |||||
Sbjct: 11373720 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11373772



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 292      ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 343
                ||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 11408787 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 11408838
to top
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 283  caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 342
            |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 8918 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 8859

                             
Query: 343  tcgctaaatcctgcttt 359
            ||  | |||||||||||
Sbjct: 8858 tcattgaatcctgcttt 8842
to top
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
            insert sequence
          Length = 1362

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 283  caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 342
            |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 1162 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 1103

                             
Query: 343  tcgctaaatcctgcttt 359
            ||  | |||||||||||
Sbjct: 1102 tcattgaatcctgcttt 1086
to top
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
            insert sequence
          Length = 1264

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 283  caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 342
            |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 1167 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 1108

                             
Query: 343  tcgctaaatcctgcttt 359
            ||  | |||||||||||
Sbjct: 1107 tcattgaatcctgcttt 1091
to top
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 290  atggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcg 345
            |||| ||||||||||||| ||| |||||||| | ||||||||||| ||| ||||||
Sbjct: 1107 atgggtagacctcgatgacaccacgagctccgattttcttgacaaccttgtagtcg 1052
to top
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
              map C53961S, complete sequence
          Length = 175121

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                          
Query: 289    tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 348
              ||||| |||||||| | ||  |||||||||||||||||||| ||||| || ||||| || 
Sbjct: 140244 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 140303

                         
Query: 349    aatcctgcttt 359
              || ||||||||
Sbjct: 140304 aagcctgcttt 140314



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                          
Query: 293    gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 352
              |||||||||| |  ||| ||||||||||||||| ||| |||||||||||||| || || |
Sbjct: 138362 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 138420

                   
Query: 353    ctgct 357
              |||||
Sbjct: 138421 ctgct 138425



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 292   ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 344
             ||||||||||| |||| ||  |||| ||||| |||||| |||||||| |||||
Sbjct: 80889 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 80941



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                  
Query: 292    ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 343
              ||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 115956 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 116007
to top
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                         
Query: 284   aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 343
             ||||| |||||||||||||||  | | |||||||||| || |||||| | ||||||||||
Sbjct: 45034 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 44975

                       
Query: 344   cgctaaatcc 353
             | || |||||
Sbjct: 44974 cactgaatcc 44965
to top
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                         
Query: 284   aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 343
             ||||| |||||||||||||||  | | |||||||||| || |||||| | ||||||||||
Sbjct: 50741 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 50800

                       
Query: 344   cgctaaatcc 353
             | || |||||
Sbjct: 50801 cactgaatcc 50810
to top
>gb|AC121845.3| Mus musculus BAC clone RP24-82B23 from 5, complete sequence
          Length = 217530

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 56    catacatatacccatacaactcacacca 83
             |||||||||||||||||||| |||||||
Sbjct: 92220 catacatatacccatacaacccacacca 92247



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    catacatatacccatacaac 75
             ||||||||||||||||||||
Sbjct: 92193 catacatatacccatacaac 92212
to top
>emb|AL354682.22| Human DNA sequence from clone RP11-282L14 on chromosome 9, complete
             sequence
          Length = 108785

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     taacaaaatataatactttta 26
             |||||||||||||||||||||
Sbjct: 23332 taacaaaatataatactttta 23312
to top
>gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, complete sequence
          Length = 197907

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   ttacaaacttggtcattgccc 205
             |||||||||||||||||||||
Sbjct: 98423 ttacaaacttggtcattgccc 98403
to top
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 267     cgaggcacttggcacacaatc 287
               |||||||||||||||||||||
Sbjct: 2961124 cgaggcacttggcacacaatc 2961104
to top
>gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, complete sequence
          Length = 133862

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 54    gacatacatatacccatacaa 74
             |||||||||||||||||||||
Sbjct: 59300 gacatacatatacccatacaa 59280
to top
>gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D23, complete sequence
          Length = 98620

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 54   gacatacatatacccatacaa 74
            |||||||||||||||||||||
Sbjct: 1205 gacatacatatacccatacaa 1185
to top
>gb|AC168116.3| Mus musculus BAC clone RP24-108N24 from chromosome 1, complete sequence
          Length = 158847

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     acatacatatacccatacaa 74
              ||||||||||||||||||||
Sbjct: 115847 acatacatatacccatacaa 115828
to top
>ref|XM_506587.1| PREDICTED Oryza sativa (japonica cultivar-group), P0597G07.108
           patrial mRNA
          Length = 1493

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 315 agctcccagtttcttgacaa 334
           ||||||||||||||||||||
Sbjct: 441 agctcccagtttcttgacaa 460
to top
>gb|AC117648.14| Mus musculus, clone RP23-254P23, complete sequence
          Length = 228273

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     acatacatatacccatacaa 74
              ||||||||||||||||||||
Sbjct: 228231 acatacatatacccatacaa 228250
to top
>emb|AL591622.6| Human DNA sequence from clone RP11-141L16 on chromosome 9, complete
            sequence
          Length = 89944

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tattgaaactaaagatacat 119
            ||||||||||||||||||||
Sbjct: 5621 tattgaaactaaagatacat 5602
to top
>emb|AL136128.9| Human DNA sequence from clone RP1-84N20 on chromosome 6 Contains a novel
              gene, the 5' end of the TPD52L1 gene encoding two variants
              of tumor protein D52-like 1 protein and two CpG islands,
              complete sequence
          Length = 151875

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 40     tatacaaccacgctgacatacata 63
              |||||||||| |||||||||||||
Sbjct: 106180 tatacaaccatgctgacatacata 106203
to top
>gb|AC137767.16| Homo sapiens 12 BAC RP13-942N8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 86027

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    atacatatacccatacaact 76
             ||||||||||||||||||||
Sbjct: 47695 atacatatacccatacaact 47714
to top
>gb|AC137631.2| Homo sapiens 12 BAC RP11-1018F11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 55265

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    atacatatacccatacaact 76
             ||||||||||||||||||||
Sbjct: 16975 atacatatacccatacaact 16994
to top
>emb|BX546473.10| Zebrafish DNA sequence from clone DKEYP-51F2 in linkage group 3,
             complete sequence
          Length = 211253

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     caaaatataatacttttagcttgt 32
             |||| |||||||||||||||||||
Sbjct: 43087 caaagtataatacttttagcttgt 43110
to top
>gb|AC018563.7| Homo sapiens, clone RP11-122D10, complete sequence
          Length = 174691

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     acaaaatataatacttttag 27
             ||||||||||||||||||||
Sbjct: 12589 acaaaatataatacttttag 12570
to top
>gb|AC019016.7| Homo sapiens chromosome 15, clone RP11-201P10, complete sequence
          Length = 53718

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     acaaaatataatacttttag 27
             ||||||||||||||||||||
Sbjct: 16836 acaaaatataatacttttag 16855
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 315      agctcccagtttcttgacaa 334
                ||||||||||||||||||||
Sbjct: 29313283 agctcccagtttcttgacaa 29313302
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 10      aaaatataatacttttagct 29
               ||||||||||||||||||||
Sbjct: 2030402 aaaatataatacttttagct 2030383
to top
>gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complete sequence
          Length = 151319

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     acatacatatacccatacaa 74
              ||||||||||||||||||||
Sbjct: 140132 acatacatatacccatacaa 140113
to top
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0597G07
          Length = 152928

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    agctcccagtttcttgacaa 334
              ||||||||||||||||||||
Sbjct: 101972 agctcccagtttcttgacaa 101991
to top
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0026E05
          Length = 159860

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    aaaatataatacttttagct 29
             ||||||||||||||||||||
Sbjct: 80610 aaaatataatacttttagct 80591
to top
>dbj|AK108661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F02, full
           insert sequence
          Length = 1493

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 315 agctcccagtttcttgacaa 334
           ||||||||||||||||||||
Sbjct: 441 agctcccagtttcttgacaa 460
to top
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
            insert sequence
          Length = 1262

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 292  ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 343
            ||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 1167 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 1116
to top
>gb|AY103669.1| Zea mays PCO073521 mRNA sequence
          Length = 1503

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 372  gctccagtcattttcatctcgttgccgtccttttgt 407
            |||||| || ||||||||||  ||||||||||||||
Sbjct: 1040 gctccattctttttcatctctctgccgtccttttgt 1005
to top
>gb|AC161367.4| Mus musculus BAC clone RP23-450F3 from chromosome 1, complete sequence
          Length = 188588

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     acatacatatacccatacaa 74
              ||||||||||||||||||||
Sbjct: 158515 acatacatatacccatacaa 158534
to top
>gb|AF033496.1|AF033496 Zea mays herbicide safener binding protein (SBP1) mRNA, complete cds
          Length = 1438

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 372  gctccagtcattttcatctcgttgccgtccttttgt 407
            |||||| || ||||||||||  ||||||||||||||
Sbjct: 1038 gctccattctttttcatctctctgccgtccttttgt 1003
to top
>gb|AC153843.6| Mus musculus 10 BAC RP23-273P15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 202968

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    acatacatatacccatacaa 74
             ||||||||||||||||||||
Sbjct: 48112 acatacatatacccatacaa 48131
to top
>emb|AL355432.7|HS56F10 Homo sapiens chromosome 9 BAC RP11-56F10, complete sequence
          Length = 188491

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      ataacaaaatataatacttt 24
              ||||||||||||||||||||
Sbjct: 103072 ataacaaaatataatacttt 103053


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,351,815
Number of Sequences: 3902068
Number of extensions: 4351815
Number of successful extensions: 80912
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80645
Number of HSP's gapped (non-prelim): 264
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top