>ATF2_CHICK (O93602) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2)
          Length = 487

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
 Frame = +3

Query: 42  HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*KV----------TQYTLRDTNRSMTS 191
           H P  + ++    ++   P IPG   PQP +S+ K+           Q T  DT +   S
Sbjct: 223 HVPAAVPLVRPVTMVPSIPGIPGPSSPQPVQSEAKLRLKAALTQQHPQVTNGDTAKGHPS 282

Query: 192 GRTTTERRKQRPCSAQMETLLGMPMAVSPS 281
           G   T+  + RP S Q           SP+
Sbjct: 283 GLVRTQSEEPRPQSLQQPATSTTETPASPA 312

>GATA6_HUMAN (Q92908) Transcription factor GATA-6 (GATA-binding factor 6)|
          Length = 449

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 44  LSSPYQHHLRHNHHFPSSTNPW---QLITATTQKPMKSNTIH 160
           L+  Y HH  H+HH PS  +P+    L  A    P ++  +H
Sbjct: 173 LNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLH 214

>HXA1_MOUSE (P09022) Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein|
           ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein
           ERA-1-399)
          Length = 331

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 44  LSSPYQHHLRHNHHFPSS 97
           +SSP+ HH  H+HH P +
Sbjct: 56  ISSPHHHHHHHHHHHPQT 73

>C18AA_PAEPP (Q45358) Parasporal crystal protein cry18Aa (Parasporal|
           delta-endotoxin CryXVIIIA(a)) (Crystaline parasporal
           protoxin) (79 kDa crystal protein)
          Length = 706

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 137 PMKSNTIHLARHEPIHDQRTDDYRKKETKTM 229
           P+ +NTI      PI+  RTD +RKK T+ +
Sbjct: 74  PIDNNTICSTDFTPINVMRTDPFRKKSTQEL 104

>ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2) (cAMP response
           element-binding protein CRE-BP1) (MXBP protein)
          Length = 487

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
 Frame = +3

Query: 42  HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 191
           H P  + ++    ++   P IPG   PQP +S+ K      +TQ     T  DT +   S
Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282

Query: 192 GRTTTERRKQRPCSAQMETLLGMPMAVSPS 281
           G   T+  + RP S Q           SP+
Sbjct: 283 GLVRTQSEESRPQSLQQPATSTTETPASPA 312

>ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2) (cAMP response
           element-binding protein CRE-BP1) (HB16)
          Length = 487

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
 Frame = +3

Query: 42  HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 191
           H P  + ++    ++   P IPG   PQP +S+ K      +TQ     T  DT +   S
Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282

Query: 192 GRTTTERRKQRPCSAQMETLLGMPMAVSPS 281
           G   T+  + RP S Q           SP+
Sbjct: 283 GLVRTQSEESRPQSLQQPATSTTETPASPA 312

>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)|
          Length = 877

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = -2

Query: 277 GLTAMGIPNSVSI 239
           GLTAMGIPNS+SI
Sbjct: 865 GLTAMGIPNSISI 877

>AHC1_YEAST (Q12433) Protein AHC1 (ADA HAT complex component 1)|
          Length = 566

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
 Frame = +2

Query: 44  LSSPYQHHLRHNHHFPSS--------TNPWQLITATTQKPMKSN 151
           + SP Q  L+H HH P+S        TN +Q+ T  + + +++N
Sbjct: 1   MMSPAQDKLQHQHHNPNSSSSSSSKMTNVYQVTTPKSPQDLENN 44

>DDLA_SHIFL (P0A6K0) D-alanine--D-alanine ligase A (EC 6.3.2.4)|
           (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A)
          Length = 364

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 147 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 281
           VT+  LRD   ++    T T   +     A++E+ LG+P+ V P+
Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187

>DDLA_ECOLI (P0A6J8) D-alanine--D-alanine ligase A (EC 6.3.2.4)|
           (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A)
          Length = 364

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 147 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 281
           VT+  LRD   ++    T T   +     A++E+ LG+P+ V P+
Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187

>DDLA_ECOL6 (Q8FKE3) D-alanine--D-alanine ligase A (EC 6.3.2.4)|
           (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A)
          Length = 364

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 147 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 281
           VT+  LRD   ++    T T   +     A++E+ LG+P+ V P+
Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187

>DDLA_ECO57 (P0A6J9) D-alanine--D-alanine ligase A (EC 6.3.2.4)|
           (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A)
          Length = 364

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 147 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 281
           VT+  LRD   ++    T T   +     A++E+ LG+P+ V P+
Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187

>VGLM_EBV (P03215) Glycoprotein M|
          Length = 405

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 117 LPQPPRSQ*KVTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPM 266
           L   PR +   T    R+  RS TS  ++   R+QRP S Q      +PM
Sbjct: 346 LESEPRPRPSRTPSPGRNRRRSSTSSSSSRSTRRQRPVSTQALVSSVLPM 395

>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)|
          Length = 387

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 35  HASLSSPYQHHLRHNHHFPSSTNPWQLITATTQKPMKS 148
           H +   P+ HH  H+HH P    P +   A  +   K+
Sbjct: 38  HHNSHHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75

>DYHC_TRIGR (P23098) Dynein beta chain, ciliary|
          Length = 4466

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 104  PWQLITATTQKPMKSNT-IHLARHEPIHDQRTDDYRKKETKTMLSSDGDAVGDAHGGEPQ 280
            P Q+  ATTQ    +   I  AR E  H+    DY KK+ + + +  G  +G    G+ Q
Sbjct: 1697 PAQVALATTQVWWTTEVNISFARLEEGHENSMKDYNKKQIQQLNTLIGLLIGKLTKGDRQ 1756

Query: 281  R 283
            +
Sbjct: 1757 K 1757

>HIPK4_RAT (Q4V793) Homeodomain-interacting protein kinase 4 (EC 2.7.11.1)|
          Length = 616

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 29  LIHASLSSPYQHHLRHNHHFPSSTNPWQL 115
           L+HA+  +   HH    +  P +TNPWQL
Sbjct: 238 LLHAARKA---HHFFKRNPHPDATNPWQL 263

>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
           (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1)
          Length = 451

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 35  HASLSSPYQHHLRHNHHFPSSTNPWQLITATTQKPMKS 148
           H +   P+ HH  H+HH P    P +   A  +   K+
Sbjct: 38  HHNSHHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 24.6 bits (52), Expect(2) = 8.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 23  RVLIHASLSSPYQHHLRHNHHFPSSTNPWQLITATT 130
           R+ + ++ ++   HH +H+HH P   +     T TT
Sbjct: 10  RLSLPSTTTTRDHHHQQHHHHPPPPPSRTHFTTITT 45



 Score = 21.2 bits (43), Expect(2) = 8.9
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = +1

Query: 106 LATNYRNHPEANEK*HNTPCETRTDP*PADGRLPKEGNKDH 228
           L  ++  HP    + H+ P   R    P D   P    +DH
Sbjct: 65  LFLSFPPHPPRPPQDHHRPTPARDHRDPRDHLPPTRTRRDH 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,808,275
Number of Sequences: 219361
Number of extensions: 749162
Number of successful extensions: 2441
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2404
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)