ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ243524.1|PPR243524 Phleum pratense mRNA for putative fruct... 66 4e-08
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.15
3dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.15
4dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.15
5dbj|AK104719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.15
6dbj|AK073770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.15
7dbj|AK062270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.15
8gb|AC159205.2| Mus musculus BAC clone RP23-233O17 from chromosom... 42 0.57
9gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca co... 42 0.57
10gb|AC113342.2| Homo sapiens chromosome 5 clone CTD-2344D1, compl... 42 0.57
11gb|AC092271.3| Homo sapiens chromosome 5 clone CTC-305H13, compl... 42 0.57
12gb|AC026307.16|AC026307 Homo sapiens 12 BAC RP11-753N8 (Roswell ... 42 0.57
13gb|DQ235192.1| Solanum tuberosum clone 167F07 unknown mRNA 40 2.3
14gb|DQ207873.1| Solanum tuberosum clone 088H05 unknown mRNA 40 2.3
15gb|BT014505.1| Lycopersicon esculentum clone 133880F, mRNA sequence 40 2.3
16gb|AC122047.4| Mus musculus BAC clone RP24-456A9 from chromosome... 40 2.3
17gb|AC128715.5| Homo sapiens 3 BAC RP11-727B20 (Roswell Park Canc... 40 2.3
18gb|AC116442.3| Homo sapiens chromosome 3 clone RP11-534H12, comp... 40 2.3
19emb|BX323467.8| Zebrafish DNA sequence from clone DKEY-48N15, co... 40 2.3
20gb|AC157328.2| Mus musculus BAC clone RP23-230P11 from chromosom... 40 2.3
21gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome 40 2.3
22emb|AL928635.5| Mouse DNA sequence from clone RP23-410E7 on chro... 40 2.3
23ref|NM_118953.2| Arabidopsis thaliana diacylglycerol kinase AT4G... 38 8.9
24gb|AC162448.10| Mus musculus chromosome 1, clone RP24-405F23, co... 38 8.9
25gb|AC154193.2| Mus musculus BAC clone RP24-398A6 from chromosome... 38 8.9
26gb|AC120348.9| Mus musculus chromosome 5, clone RP23-55P22, comp... 38 8.9
27gb|AC138641.10| Mus musculus chromosome 5, clone RP23-466K15, co... 38 8.9
28gb|AC146066.4| Pan troglodytes BAC clone RP43-60F19 from 7, comp... 38 8.9
29gb|AC182749.2| Mus musculus BAC clone RP23-464D14 from chromosom... 38 8.9
30gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, comp... 38 8.9
31emb|CT009539.5| Mouse DNA sequence from clone RP23-10G6 on chrom... 38 8.9
32emb|CR812847.5| Zebrafish DNA sequence from clone DKEY-9I15 in l... 38 8.9
33emb|BX927327.14| Zebrafish DNA sequence from clone CH211-11C15 i... 38 8.9
34gb|AC125109.3| Mus musculus BAC clone RP24-232H5 from chromosome... 38 8.9
35gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome... 38 8.9
36gb|AC130817.4| Mus musculus BAC clone RP23-68J13 from 16, comple... 38 8.9
37gb|AC113068.9| Mus musculus chromosome 1, clone RP23-269F19, com... 38 8.9
38gb|AC002451.1| Homo sapiens BAC clone GS1-306C12 from 7, complet... 38 8.9
39gb|AC102604.13| Mus musculus chromosome 19, clone RP23-385L22, c... 38 8.9
40gb|AC162909.2| Mus musculus BAC clone RP24-308O19 from chromosom... 38 8.9
41emb|Z93242.1|HS389A20 Human DNA sequence from clone RP3-389A20 o... 38 8.9
42emb|AL360174.7| Human DNA sequence from clone RP3-465D4 on chrom... 38 8.9
43emb|AL359076.16| Human DNA sequence from clone RP11-264I13 on ch... 38 8.9
44emb|AL161779.32| Human DNA sequence from clone RP6-29D12 on chro... 38 8.9
45emb|AL138771.10| Human DNA sequence from clone RP4-542G16 on chr... 38 8.9
46emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, ... 38 8.9
47emb|AL035524.1|ATT13J8 Arabidopsis thaliana DNA chromosome 4, BA... 38 8.9
48emb|BX510929.10| Zebrafish DNA sequence from clone CH211-261F9, ... 38 8.9
49gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone mth2-7... 38 8.9
50gb|AC154027.5| Mus musculus chromosome 16, clone wi1-10D11, comp... 38 8.9
51gb|AC175822.2| Pan troglodytes BAC clone CH251-442M6 from chromo... 38 8.9
52gb|AC021887.4|AC021887 Homo sapiens BAC clone RP11-777M17 from 1... 38 8.9
53ref|XM_623848.1| PREDICTED: Apis mellifera similar to CG31229-PA... 38 8.9
54gb|AC133939.4| Mus musculus BAC clone RP23-402F1 from chromosome... 38 8.9
55emb|BX005228.7| Zebrafish DNA sequence from clone CH211-163M17 i... 38 8.9
56gb|AC112944.7| Mus musculus chromosome 5, clone RP23-411F8, comp... 38 8.9
57gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 38 8.9
58dbj|AK129691.1| Homo sapiens cDNA FLJ26180 fis, clone ADG04221 38 8.9
59emb|AM180254.1| Lawsonia intracellularis PHE/MN1-00 plasmid 2 38 8.9
60emb|AL117356.5|CNS01DRK Human chromosome 14 DNA sequence BAC R-6... 38 8.9
61gb|AC117808.8| Mus musculus chromosome 1, clone RP24-570C24, com... 38 8.9
62gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 38 8.9
63gb|AC173477.2| Mus musculus BAC clone RP24-344P5 from chromosome... 38 8.9
64gb|AC102620.11| Mus musculus chromosome 5, clone RP23-429E19, co... 38 8.9 
>emb|AJ243524.1|PPR243524 Phleum pratense mRNA for putative fructose-bisphosphate aldolase,
           partial
          Length = 963

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 1   gaacaaaaacctgctgctccaatttacgatacgcagcaccc 41
           ||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 919 gaacaaaaaccagctgctccaatttaccatacgcagcaccc 879



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 62/70 (88%), Gaps = 4/70 (5%)
 Strand = Plus / Minus

                                                                       
Query: 106 attattaaaaacgaggttcgatatccgaagaatatatctcaggactctgaaaaccaaaca 165
           |||||||||||||| ||||||||||||||| ||||||   ||||||| |||||| |||||
Sbjct: 808 attattaaaaacgatgttcgatatccgaag-atatat---aggactcagaaaacgaaaca 753

                     
Query: 166 atgatactgg 175
           || |||||||
Sbjct: 752 ataatactgg 743
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 13       gctgctccaatttacgatacgcagca 38
                ||||||||||||||| ||||||||||
Sbjct: 39426738 gctgctccaatttaccatacgcagca 39426763
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>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1417F08
          Length = 155536

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 13   gctgctccaatttacgatacgcagca 38
            ||||||||||||||| ||||||||||
Sbjct: 1752 gctgctccaatttaccatacgcagca 1777
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>dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             fosmid clone:OSJNOa108M02
          Length = 38208

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 13    gctgctccaatttacgatacgcagca 38
             ||||||||||||||| ||||||||||
Sbjct: 37262 gctgctccaatttaccatacgcagca 37287
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>dbj|AK104719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A10, full
            insert sequence
          Length = 1399

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 13   gctgctccaatttacgatacgcagca 38
            ||||||||||||||| ||||||||||
Sbjct: 1368 gctgctccaatttaccatacgcagca 1343
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>dbj|AK073770.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068A16, full
            insert sequence
          Length = 1486

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 13   gctgctccaatttacgatacgcagca 38
            ||||||||||||||| ||||||||||
Sbjct: 1415 gctgctccaatttaccatacgcagca 1390
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>dbj|AK062270.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A06, full
           insert sequence
          Length = 732

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 13  gctgctccaatttacgatacgcagca 38
           ||||||||||||||| ||||||||||
Sbjct: 715 gctgctccaatttaccatacgcagca 690
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>gb|AC159205.2| Mus musculus BAC clone RP23-233O17 from chromosome 13, complete sequence
          Length = 202409

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 92     aaagcaagttcagcattattaaaaa 116
              |||||||||||||||||| ||||||
Sbjct: 118643 aaagcaagttcagcattagtaaaaa 118619
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>gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete
            genome
          Length = 686194

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 54   attcatcaactccaaaaagaaacta 78
            |||||| ||||||||||||||||||
Sbjct: 8962 attcatgaactccaaaaagaaacta 8938
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>gb|AC113342.2| Homo sapiens chromosome 5 clone CTD-2344D1, complete sequence
          Length = 100133

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 146   aggactctgaaaaccaaacaa 166
             |||||||||||||||||||||
Sbjct: 85413 aggactctgaaaaccaaacaa 85433
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>gb|AC092271.3| Homo sapiens chromosome 5 clone CTC-305H13, complete sequence
          Length = 84971

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 146   aggactctgaaaaccaaacaa 166
             |||||||||||||||||||||
Sbjct: 54918 aggactctgaaaaccaaacaa 54898
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>gb|AC026307.16|AC026307 Homo sapiens 12 BAC RP11-753N8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166357

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 88    tatgaaagcaagttcagcattattaaaaa 116
             ||||||||||| ||||||||||| |||||
Sbjct: 67517 tatgaaagcaatttcagcattatcaaaaa 67545
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>gb|DQ235192.1| Solanum tuberosum clone 167F07 unknown mRNA
          Length = 1536

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 94  agcaagttcagcattattaaaaac 117
           ||||| ||||||||||||||||||
Sbjct: 890 agcaaattcagcattattaaaaac 913
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>gb|DQ207873.1| Solanum tuberosum clone 088H05 unknown mRNA
          Length = 1497

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 94  agcaagttcagcattattaaaaac 117
           ||||| ||||||||||||||||||
Sbjct: 873 agcaaattcagcattattaaaaac 896
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>gb|BT014505.1| Lycopersicon esculentum clone 133880F, mRNA sequence
          Length = 1465

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 94  agcaagttcagcattattaaaaac 117
           ||||| ||||||||||||||||||
Sbjct: 916 agcaaattcagcattattaaaaac 939
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>gb|AC122047.4| Mus musculus BAC clone RP24-456A9 from chromosome 2, complete sequence
          Length = 172110

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    aactccaaaaagaaactact 80
             ||||||||||||||||||||
Sbjct: 91138 aactccaaaaagaaactact 91119
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>gb|AC128715.5| Homo sapiens 3 BAC RP11-727B20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 100845

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 53    tattcatcaactccaaaaagaaac 76
             ||||||||| ||||||||||||||
Sbjct: 27322 tattcatcacctccaaaaagaaac 27345
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>gb|AC116442.3| Homo sapiens chromosome 3 clone RP11-534H12, complete sequence
          Length = 175610

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     tattcatcaactccaaaaagaaac 76
              ||||||||| ||||||||||||||
Sbjct: 106662 tattcatcacctccaaaaagaaac 106685
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>emb|BX323467.8| Zebrafish DNA sequence from clone DKEY-48N15, complete sequence
          Length = 116326

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aaaacctgctgctccaattt 25
             ||||||||||||||||||||
Sbjct: 93592 aaaacctgctgctccaattt 93573
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>gb|AC157328.2| Mus musculus BAC clone RP23-230P11 from chromosome 9, complete sequence
          Length = 206694

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 153   tgaaaaccaaacaatgatactggt 176
             ||||||| ||||||||||||||||
Sbjct: 56439 tgaaaacgaaacaatgatactggt 56462
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>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome
          Length = 1993564

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      acaaaaacctgctgctccaa 22
              ||||||||||||||||||||
Sbjct: 259916 acaaaaacctgctgctccaa 259897
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>emb|AL928635.5| Mouse DNA sequence from clone RP23-410E7 on chromosome 2, complete
              sequence
          Length = 175392

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     aactccaaaaagaaactact 80
              ||||||||||||||||||||
Sbjct: 133469 aactccaaaaagaaactact 133488
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>ref|NM_118953.2| Arabidopsis thaliana diacylglycerol kinase AT4G28130 mRNA, complete
           cds
          Length = 1401

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 52  gtattcatcaactccaaaa 70
           |||||||||||||||||||
Sbjct: 148 gtattcatcaactccaaaa 166
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>gb|AC162448.10| Mus musculus chromosome 1, clone RP24-405F23, complete sequence
          Length = 180366

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 60     caactccaaaaagaaacta 78
              |||||||||||||||||||
Sbjct: 123924 caactccaaaaagaaacta 123906
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>gb|AC154193.2| Mus musculus BAC clone RP24-398A6 from chromosome 14, complete sequence
          Length = 161686

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 55     ttcatcaactccaaaaaga 73
              |||||||||||||||||||
Sbjct: 153601 ttcatcaactccaaaaaga 153583
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>gb|AC120348.9| Mus musculus chromosome 5, clone RP23-55P22, complete sequence
          Length = 244565

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 60    caactccaaaaagaaacta 78
             |||||||||||||||||||
Sbjct: 53363 caactccaaaaagaaacta 53381
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>gb|AC138641.10| Mus musculus chromosome 5, clone RP23-466K15, complete sequence
          Length = 175628

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 60    caactccaaaaagaaacta 78
             |||||||||||||||||||
Sbjct: 47492 caactccaaaaagaaacta 47474
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>gb|AC146066.4| Pan troglodytes BAC clone RP43-60F19 from 7, complete sequence
          Length = 183557

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    atttacagggtattcatca 61
             |||||||||||||||||||
Sbjct: 65106 atttacagggtattcatca 65088
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>gb|AC182749.2| Mus musculus BAC clone RP23-464D14 from chromosome 17, complete sequence
          Length = 211198

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 153    tgaaaaccaaacaatgata 171
              |||||||||||||||||||
Sbjct: 195001 tgaaaaccaaacaatgata 194983
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>gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, complete sequence
          Length = 213684

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 91     gaaagcaagttcagcatta 109
              |||||||||||||||||||
Sbjct: 150451 gaaagcaagttcagcatta 150433
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>emb|CT009539.5| Mouse DNA sequence from clone RP23-10G6 on chromosome 14, complete
              sequence
          Length = 170619

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 55     ttcatcaactccaaaaaga 73
              |||||||||||||||||||
Sbjct: 120557 ttcatcaactccaaaaaga 120539
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>emb|CR812847.5| Zebrafish DNA sequence from clone DKEY-9I15 in linkage group 14, complete
              sequence
          Length = 230522

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 97     aagttcagcattattaaaa 115
              |||||||||||||||||||
Sbjct: 147566 aagttcagcattattaaaa 147584
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>emb|BX927327.14| Zebrafish DNA sequence from clone CH211-11C15 in linkage group 14,
            complete sequence
          Length = 182779

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 100  ttcagcattattaaaaacg 118
            |||||||||||||||||||
Sbjct: 2531 ttcagcattattaaaaacg 2549
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>gb|AC125109.3| Mus musculus BAC clone RP24-232H5 from chromosome 3, complete sequence
          Length = 165361

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 97     aagttcagcattattaaaa 115
              |||||||||||||||||||
Sbjct: 102118 aagttcagcattattaaaa 102136
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>gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome 5, complete sequence
          Length = 198245

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 91    gaaagcaagttcagcatta 109
             |||||||||||||||||||
Sbjct: 51031 gaaagcaagttcagcatta 51013
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>gb|AC130817.4| Mus musculus BAC clone RP23-68J13 from 16, complete sequence
          Length = 193917

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 142   tctcaggactctgaaaacc 160
             |||||||||||||||||||
Sbjct: 52024 tctcaggactctgaaaacc 52006
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>gb|AC113068.9| Mus musculus chromosome 1, clone RP23-269F19, complete sequence
          Length = 188836

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    aaaagaaactactacggta 86
             |||||||||||||||||||
Sbjct: 25277 aaaagaaactactacggta 25259
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>gb|AC002451.1| Homo sapiens BAC clone GS1-306C12 from 7, complete sequence
          Length = 157099

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   atttacagggtattcatca 61
            |||||||||||||||||||
Sbjct: 4180 atttacagggtattcatca 4198
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>gb|AC102604.13| Mus musculus chromosome 19, clone RP23-385L22, complete sequence
          Length = 212387

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    tattcatcaactccaaaaa 71
             |||||||||||||||||||
Sbjct: 97847 tattcatcaactccaaaaa 97865
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>gb|AC162909.2| Mus musculus BAC clone RP24-308O19 from chromosome 17, complete
             sequence
          Length = 145512

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 63    ctccaaaaagaaactacta 81
             |||||||||||||||||||
Sbjct: 67222 ctccaaaaagaaactacta 67240
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>emb|Z93242.1|HS389A20 Human DNA sequence from clone RP3-389A20 on chromosome Xp22.11-22.2
              Contains a calcium binding protein P22 (CHP)pseudogene, a
              novel gene, the 3' end of the NHS gene for Nance-Horan
              syndrome (congenital cataracts and dental anomalies), the
              SCML1 gene for sex comb on midleg-like 1 (Drosophila), a
              novel pseudogene and the RAI2 gene for retinoic acid
              induced 2, complete sequence
          Length = 208609

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 149    actctgaaaaccaaacaat 167
              |||||||||||||||||||
Sbjct: 175149 actctgaaaaccaaacaat 175167
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>emb|AL360174.7| Human DNA sequence from clone RP3-465D4 on chromosome Xq23, complete
             sequence
          Length = 74918

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 55    ttcatcaactccaaaaagaaact 77
             ||||||| |||||||||||||||
Sbjct: 18456 ttcatcatctccaaaaagaaact 18478
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>emb|AL359076.16| Human DNA sequence from clone RP11-264I13 on chromosome 9 Contains the
             5' end of the SMARCA2 gene for SWI/SNF related matrix
             associated actin dependent regulator of chromatin
             subfamily a member 2 (SNF2LA), a novel gene and two CpG
             islands, complete sequence
          Length = 138859

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 145   caggactctgaaaaccaaacaatgata 171
             ||||||||||| ||||||| |||||||
Sbjct: 68347 caggactctgataaccaaataatgata 68373
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>emb|AL161779.32| Human DNA sequence from clone RP6-29D12 on chromosome Xp11.1-11.23
             Contains the 3' end of the SMC1L1 gene for SMC1 structural
             maintenance of chromosomes 1-like 1 (yeast), a novel
             pseudogene, a ribosomal protein S13 (RPS13) pseudogene, a
             laminin receptor 1 (ribosomal protein SA 67kDa) (LAMR1)
             pseudogene, the 5' end of a novel gene KIAA0522 and a CpG
             island, complete sequence
          Length = 102528

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 58    atcaactccaaaaagaaac 76
             |||||||||||||||||||
Sbjct: 52814 atcaactccaaaaagaaac 52796
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>emb|AL138771.10| Human DNA sequence from clone RP4-542G16 on chromosome 10 Contains part
             of the gene for a novel protein (KIAA1617), complete
             sequence
          Length = 29145

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 161   aaacaatgatactggtaag 179
             |||||||||||||||||||
Sbjct: 18301 aaacaatgatactggtaag 18319
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>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68
          Length = 199749

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    gtattcatcaactccaaaa 70
             |||||||||||||||||||
Sbjct: 87182 gtattcatcaactccaaaa 87200
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>emb|AL035524.1|ATT13J8 Arabidopsis thaliana DNA chromosome 4, BAC clone T13J8 (ESSAII project)
          Length = 83693

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    gtattcatcaactccaaaa 70
             |||||||||||||||||||
Sbjct: 82046 gtattcatcaactccaaaa 82064
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>emb|BX510929.10| Zebrafish DNA sequence from clone CH211-261F9, complete sequence
          Length = 156428

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 94     agcaagttcagcattatta 112
              |||||||||||||||||||
Sbjct: 112539 agcaagttcagcattatta 112557
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>gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone mth2-76a9, complete sequence
          Length = 142579

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 58    atcaactccaaaaagaaac 76
             |||||||||||||||||||
Sbjct: 90581 atcaactccaaaaagaaac 90599
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>gb|AC154027.5| Mus musculus chromosome 16, clone wi1-10D11, complete sequence
          Length = 37350

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 60    caactccaaaaagaaacta 78
             |||||||||||||||||||
Sbjct: 10650 caactccaaaaagaaacta 10632
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>gb|AC175822.2| Pan troglodytes BAC clone CH251-442M6 from chromosome 7, complete
              sequence
          Length = 163335

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 43     atttacagggtattcatca 61
              |||||||||||||||||||
Sbjct: 117793 atttacagggtattcatca 117775
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>gb|AC021887.4|AC021887 Homo sapiens BAC clone RP11-777M17 from 12, complete sequence
          Length = 194497

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 97    aagttcagcattattaaaa 115
             |||||||||||||||||||
Sbjct: 82328 aagttcagcattattaaaa 82310
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>ref|XM_623848.1| PREDICTED: Apis mellifera similar to CG31229-PA (LOC551456), mRNA
          Length = 534

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 6   aaaacctgctgctccaatt 24
           |||||||||||||||||||
Sbjct: 489 aaaacctgctgctccaatt 471
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>gb|AC133939.4| Mus musculus BAC clone RP23-402F1 from chromosome 5, complete sequence
          Length = 193121

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 54     attcatcaactccaaaaag 72
              |||||||||||||||||||
Sbjct: 192101 attcatcaactccaaaaag 192083
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>emb|BX005228.7| Zebrafish DNA sequence from clone CH211-163M17 in linkage group 14,
             complete sequence
          Length = 171037

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 97    aagttcagcattattaaaa 115
             |||||||||||||||||||
Sbjct: 80637 aagttcagcattattaaaa 80619
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>gb|AC112944.7| Mus musculus chromosome 5, clone RP23-411F8, complete sequence
          Length = 209174

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    attcatcaactccaaaaag 72
             |||||||||||||||||||
Sbjct: 79438 attcatcaactccaaaaag 79456
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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 77      tactacggtattatgaaag 95
               |||||||||||||||||||
Sbjct: 1993146 tactacggtattatgaaag 1993164
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>dbj|AK129691.1| Homo sapiens cDNA FLJ26180 fis, clone ADG04221
          Length = 2397

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   atttacagggtattcatca 61
            |||||||||||||||||||
Sbjct: 1771 atttacagggtattcatca 1789
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>emb|AM180254.1| Lawsonia intracellularis PHE/MN1-00 plasmid 2
          Length = 39794

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 45    ttacagggtattcatcaactcca 67
             ||||| |||||||||||||||||
Sbjct: 39114 ttacaaggtattcatcaactcca 39136
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>emb|AL117356.5|CNS01DRK Human chromosome 14 DNA sequence BAC R-606A16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178062

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 150   ctctgaaaaccaaacaatg 168
             |||||||||||||||||||
Sbjct: 62894 ctctgaaaaccaaacaatg 62876
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>gb|AC117808.8| Mus musculus chromosome 1, clone RP24-570C24, complete sequence
          Length = 189713

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    aaaagaaactactacggta 86
             |||||||||||||||||||
Sbjct: 32525 aaaagaaactactacggta 32543
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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 77      tactacggtattatgaaag 95
               |||||||||||||||||||
Sbjct: 1998210 tactacggtattatgaaag 1998228
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>gb|AC173477.2| Mus musculus BAC clone RP24-344P5 from chromosome 17, complete sequence
          Length = 155999

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 153   tgaaaaccaaacaatgata 171
             |||||||||||||||||||
Sbjct: 74274 tgaaaaccaaacaatgata 74256
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>gb|AC102620.11| Mus musculus chromosome 5, clone RP23-429E19, complete sequence
          Length = 208435

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 155   aaaaccaaacaatgatactggtaagcg 181
             ||||| ||||||||| |||||||||||
Sbjct: 86927 aaaacaaaacaatgaaactggtaagcg 86953


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,986,794
Number of Sequences: 3902068
Number of extensions: 1986794
Number of successful extensions: 141785
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141489
Number of HSP's gapped (non-prelim): 296
length of query: 182
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 160
effective length of database: 17,147,199,772
effective search space: 2743551963520
effective search space used: 2743551963520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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