ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X63052.1|HVCP29 Hordeum vulgare gene for CP29 precursor for ... 561 e-157
2gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome... 155 9e-35
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 155 9e-35
4dbj|AK104824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 9e-35
5dbj|AK098872.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 9e-35
6dbj|AK061295.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 9e-35
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 155 9e-35
8dbj|D85512.1| Oryza sativa (japonica cultivar-group) CP26 mRNA, ... 155 9e-35
9gb|AY105650.1| Zea mays PCO135935 mRNA sequence 145 9e-32
10gb|U23188.1|ZMU23188 Zea mays chlorophyll a/b-binding apoprotein... 145 9e-32
11gb|U23189.1|ZMU23189 Zea mays chlorophyll a/b-binding apoprotein... 123 3e-25
12gb|AY855171.1| Eleusine coracana subsp. coracana clone 1 light h... 115 8e-23
13gb|BT014450.1| Lycopersicon esculentum clone 133776F, mRNA sequence 48 0.016
14emb|X61287.1|LECAB9 L.esculentum Cab9 gene for type I (26 kD) CP... 48 0.016
15dbj|AB050007.2| Chlamydomonas reinhardtii lhcb5 mRNA for CP26, c... 46 0.062
16gb|AC145591.5| Mus musculus BAC clone RP24-176N2 from chromosome... 42 0.97
17gb|U25812.1|PSU25812 Pseudomonas syringae pv. syringae hrp gene ... 42 0.97
18gb|AC139637.17| Mus musculus chromosome 15, clone RP24-253M12, c... 40 3.8
19ref|NM_001039970.1| Homo sapiens protein tyrosine phosphatase, n... 40 3.8
20ref|NM_032781.3| Homo sapiens protein tyrosine phosphatase, non-... 40 3.8
21ref|NM_006906.1| Homo sapiens protein tyrosine phosphatase, non-... 40 3.8
22gb|AC142474.4| Mus musculus BAC clone RP24-362N7 from chromosome... 40 3.8
23ref|XM_883654.1| Candida albicans SC5314 hypothetical protein (C... 40 3.8
24ref|XM_707383.1| Candida albicans SC5314 potential guanine nucle... 40 3.8
25gb|BC046435.1| Homo sapiens protein tyrosine phosphatase, non-re... 40 3.8
26gb|BC064807.1| Homo sapiens protein tyrosine phosphatase, non-re... 40 3.8
27gb|BC039897.1| Homo sapiens protein tyrosine phosphatase, non-re... 40 3.8
28emb|AL832541.1|HSM803850 Homo sapiens mRNA; cDNA DKFZp547A0817 (... 40 3.8
29emb|AL806524.10| Mouse DNA sequence from clone RP23-158E10 on ch... 40 3.8
30dbj|AK127312.1| Homo sapiens cDNA FLJ45381 fis, clone BRHIP30210... 40 3.8
31dbj|AK090923.1| Homo sapiens cDNA FLJ33604 fis, clone BRAMY20152... 40 3.8
32dbj|AK027333.1| Homo sapiens cDNA FLJ14427 fis, clone HEMBA1006173 40 3.8
33dbj|AK055450.1| Homo sapiens cDNA FLJ30888 fis, clone FEBRA20050... 40 3.8
34gb|AC103974.6| Homo sapiens chromosome 11, clone RP11-1081L13, c... 40 3.8
35emb|BX530075.7| Zebrafish DNA sequence from clone CH211-1O14 in ... 40 3.8
36gb|BC047349.1| Mus musculus, clone IMAGE:3595895, mRNA 40 3.8
37dbj|AB060245.1| Macaca fascicularis brain cDNA clone:QflA-15249,... 40 3.8
38gb|U68715.1|BFU68715 Botryotinia fuckeliana endopolygalacturonas... 40 3.8
39dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, comp... 40 3.8
40gb|AD000005.1|MSGY42 Mycobacterium tuberculosis sequence from cl... 40 3.8
41emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-9... 40 3.8
42gb|M12152.1|LGIAB19A Lemna gibba chlorophyll a/b apoprotein gene... 40 3.8 
>emb|X63052.1|HVCP29 Hordeum vulgare gene for CP29 precursor for core chlorophyll a/b
            binding (CAB) protein of photosystem II (PSII)
          Length = 2689

 Score =  561 bits (283), Expect = e-157
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                        
Query: 4    aaatcaaaacggtcatgtttcttctgcccttgataatttacacgtacggcacattcgtac 63
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2417 aaatcagaacggtcatgtttcttctgcccttgataatttacacgtacggcacattcgtac 2358

                                                                        
Query: 64   tctcatacttttccccggtaaaattcacacagcacatcatgctgcatcgcacgcacgcat 123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2357 tctcatacttttccccggtaaaattcacacagcacatcatgctgcatcgcacgcacgcat 2298

                                                                        
Query: 124  gcagctgagcatcaacagccgacggcggcggacgggcaatcaacggccagctcacaggct 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 gcagctgagcatcaacagccgacggcggcggacgggcaatcaacggccagctcacaggct 2238

                                                                        
Query: 184  gggcaccctctcggcggcgccggaaatgacggtgagcaggttgttgccgaaggggtcgct 243
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2237 gggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaaggggtcgct 2178

                                                               
Query: 244  gaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctg 294
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2177 gaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctg 2127
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>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0091I11, complete sequence
          Length = 135993

 Score =  155 bits (78), Expect = 9e-35
 Identities = 108/118 (91%)
 Strand = Plus / Minus

                                                                         
Query: 177   acaggctgggcaccctctcggcggcgccggaaatgacggtgagcaggttgttgccgaagg 236
             |||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 40261 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 40202

                                                                       
Query: 237   ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctg 294
             |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||
Sbjct: 40201 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctg 40144
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  155 bits (78), Expect = 9e-35
 Identities = 108/118 (91%)
 Strand = Plus / Minus

                                                                           
Query: 177     acaggctgggcaccctctcggcggcgccggaaatgacggtgagcaggttgttgccgaagg 236
               |||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7581175 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 7581116

                                                                         
Query: 237     ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctg 294
               |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||
Sbjct: 7581115 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctg 7581058
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>dbj|AK104824.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F05, full
           insert sequence
          Length = 1157

 Score =  155 bits (78), Expect = 9e-35
 Identities = 108/118 (91%)
 Strand = Plus / Minus

                                                                       
Query: 177 acaggctgggcaccctctcggcggcgccggaaatgacggtgagcaggttgttgccgaagg 236
           |||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 940 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 881

                                                                     
Query: 237 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctg 294
           |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||
Sbjct: 880 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctg 823
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>dbj|AK098872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B10, full
           insert sequence
          Length = 1101

 Score =  155 bits (78), Expect = 9e-35
 Identities = 108/118 (91%)
 Strand = Plus / Minus

                                                                       
Query: 177 acaggctgggcaccctctcggcggcgccggaaatgacggtgagcaggttgttgccgaagg 236
           |||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 930 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 871

                                                                     
Query: 237 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctg 294
           |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||
Sbjct: 870 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctg 813
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>dbj|AK061295.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D05, full
           insert sequence
          Length = 1186

 Score =  155 bits (78), Expect = 9e-35
 Identities = 108/118 (91%)
 Strand = Plus / Minus

                                                                       
Query: 177 acaggctgggcaccctctcggcggcgccggaaatgacggtgagcaggttgttgccgaagg 236
           |||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 941 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 882

                                                                     
Query: 237 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctg 294
           |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||
Sbjct: 881 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctg 824
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  155 bits (78), Expect = 9e-35
 Identities = 108/118 (91%)
 Strand = Plus / Minus

                                                                           
Query: 177     acaggctgggcaccctctcggcggcgccggaaatgacggtgagcaggttgttgccgaagg 236
               |||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7651262 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 7651203

                                                                         
Query: 237     ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctg 294
               |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||
Sbjct: 7651202 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctg 7651145
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>dbj|D85512.1| Oryza sativa (japonica cultivar-group) CP26 mRNA, partial sequence
          Length = 556

 Score =  155 bits (78), Expect = 9e-35
 Identities = 108/118 (91%)
 Strand = Plus / Minus

                                                                       
Query: 177 acaggctgggcaccctctcggcggcgccggaaatgacggtgagcaggttgttgccgaagg 236
           |||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 395 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 336

                                                                     
Query: 237 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctg 294
           |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||
Sbjct: 335 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctg 278
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>gb|AY105650.1| Zea mays PCO135935 mRNA sequence
          Length = 1366

 Score =  145 bits (73), Expect = 9e-32
 Identities = 109/121 (90%)
 Strand = Plus / Minus

                                                                        
Query: 174  ctcacaggctgggcaccctctcggcggcgccggaaatgacggtgagcaggttgttgccga 233
            ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1028 ctcacaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccga 969

                                                                        
Query: 234  aggggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcct 293
            ||||||||||||||||   |   |||||||||| ||| || |||||||||||||||||||
Sbjct: 968  aggggtcgctgaggtgcttggcgaggttctcgacggggccttcgccggtgacgtaggcct 909

             
Query: 294  g 294
            |
Sbjct: 908  g 908
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>gb|U23188.1|ZMU23188 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-1) mRNA,
           complete cds
          Length = 957

 Score =  145 bits (73), Expect = 9e-32
 Identities = 109/121 (90%)
 Strand = Plus / Minus

                                                                       
Query: 174 ctcacaggctgggcaccctctcggcggcgccggaaatgacggtgagcaggttgttgccga 233
           ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 886 ctcacaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccga 827

                                                                       
Query: 234 aggggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcct 293
           ||||||||||||||||   |   |||||||||| ||| || |||||||||||||||||||
Sbjct: 826 aggggtcgctgaggtgcttggcgaggttctcgacggggccttcgccggtgacgtaggcct 767

            
Query: 294 g 294
           |
Sbjct: 766 g 766
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>gb|U23189.1|ZMU23189 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-2) mRNA,
           complete cds
          Length = 1073

 Score =  123 bits (62), Expect = 3e-25
 Identities = 104/118 (88%)
 Strand = Plus / Minus

                                                                       
Query: 177 acaggctgggcaccctctcggcggcgccggaaatgacggtgagcaggttgttgccgaagg 236
           ||||||| |||  |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 881 acaggctaggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 822

                                                                     
Query: 237 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctg 294
           |||||||||||||   |   |||||||| | ||| || ||||||||||||||||||||
Sbjct: 821 ggtcgctgaggtgcttggcgaggttctccacggggccttcgccggtgacgtaggcctg 764
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>gb|AY855171.1| Eleusine coracana subsp. coracana clone 1 light harvesting protein
           mRNA, partial cds
          Length = 364

 Score =  115 bits (58), Expect = 8e-23
 Identities = 103/118 (87%)
 Strand = Plus / Minus

                                                                       
Query: 177 acaggctgggcaccctctcggcggcgccggaaatgacggtgagcaggttgttgccgaagg 236
           ||||||||||  ||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 193 acaggctgggtgccctctcggcggcaccagagatgacggtgagcaggttgttgccgaagg 134

                                                                     
Query: 237 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctg 294
           |||||||||||||   |   |||||||||| ||| ||| |||| ||||||||||||||
Sbjct: 133 ggtcgctgaggtgcttggcgaggttctcgacgggacccccgcctgtgacgtaggcctg 76



 Score = 44.1 bits (22), Expect = 0.25
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 32  cttgataatttacacgtacggcacattcgtactctcat 69
           |||||||||||||||| |||| ||||||  ||||||||
Sbjct: 319 cttgataatttacacgcacggtacattcagactctcat 282
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>gb|BT014450.1| Lycopersicon esculentum clone 133776F, mRNA sequence
          Length = 1196

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 209 atgacggtgagcaggttgttgccgaaggggtc 240
           ||||||||||||| ||||||||| ||||||||
Sbjct: 906 atgacggtgagcaagttgttgccaaaggggtc 875
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>emb|X61287.1|LECAB9 L.esculentum Cab9 gene for type I (26 kD) CP29 polypeptide
          Length = 2327

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 209  atgacggtgagcaggttgttgccgaaggggtc 240
            ||||||||||||| ||||||||| ||||||||
Sbjct: 1938 atgacggtgagcaagttgttgccaaaggggtc 1907
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>dbj|AB050007.2| Chlamydomonas reinhardtii lhcb5 mRNA for CP26, complete cds
          Length = 952

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 211 gacggtgagcaggttgttgccgaaggggtcg 241
           |||||| |||||||||| |||||||||||||
Sbjct: 883 gacggtcagcaggttgtagccgaaggggtcg 853
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>gb|AC145591.5| Mus musculus BAC clone RP24-176N2 from chromosome 18, complete sequence
          Length = 167532

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    aaattcacacagcacatcatg 104
             |||||||||||||||||||||
Sbjct: 74556 aaattcacacagcacatcatg 74536
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>gb|U25812.1|PSU25812 Pseudomonas syringae pv. syringae hrp gene cluster, hrpU, hrpW,
           hrpO, hrpX, and hrpY genes, complete cds, and hrpU2,
           partial cds
          Length = 3672

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 212 acggtgagcaggttgttgccgaagg 236
           ||||||||||||| |||||||||||
Sbjct: 488 acggtgagcaggtggttgccgaagg 512
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>gb|AC139637.17| Mus musculus chromosome 15, clone RP24-253M12, complete sequence
          Length = 136076

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   caggctgggcaccctctcgg 197
             ||||||||||||||||||||
Sbjct: 97871 caggctgggcaccctctcgg 97852
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>ref|NM_001039970.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched) (PTPN5), transcript variant 3, mRNA
          Length = 3105

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  ctcacaggctgggcaccctc 193
            ||||||||||||||||||||
Sbjct: 2657 ctcacaggctgggcaccctc 2638
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>ref|NM_032781.3| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched) (PTPN5), transcript variant 2, mRNA
          Length = 3156

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  ctcacaggctgggcaccctc 193
            ||||||||||||||||||||
Sbjct: 2708 ctcacaggctgggcaccctc 2689
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>ref|NM_006906.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched) (PTPN5), transcript variant 1, mRNA
          Length = 3201

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  ctcacaggctgggcaccctc 193
            ||||||||||||||||||||
Sbjct: 2753 ctcacaggctgggcaccctc 2734
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>gb|AC142474.4| Mus musculus BAC clone RP24-362N7 from chromosome 15, complete sequence
          Length = 172879

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    caggctgggcaccctctcgg 197
              ||||||||||||||||||||
Sbjct: 152256 caggctgggcaccctctcgg 152275
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>ref|XM_883654.1| Candida albicans SC5314 hypothetical protein (CaJ7.0138) partial
           mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 222 ggttgttgccgaaggggtcgctga 245
           ||||| ||||||||||||||||||
Sbjct: 588 ggttggtgccgaaggggtcgctga 611
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>ref|XM_707383.1| Candida albicans SC5314 potential guanine nucleotide exchange
           factor eIF-2B alpha subunit (GCN3) partial mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 222 ggttgttgccgaaggggtcgctga 245
           ||||| ||||||||||||||||||
Sbjct: 588 ggttggtgccgaaggggtcgctga 611
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>gb|BC046435.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched), mRNA (cDNA clone IMAGE:5198635),
            partial cds
          Length = 1680

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  ctcacaggctgggcaccctc 193
            ||||||||||||||||||||
Sbjct: 1232 ctcacaggctgggcaccctc 1213
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>gb|BC064807.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched), transcript variant 1, mRNA (cDNA
            clone MGC:65158 IMAGE:5726473), complete cds
          Length = 2947

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  ctcacaggctgggcaccctc 193
            ||||||||||||||||||||
Sbjct: 2517 ctcacaggctgggcaccctc 2498
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>gb|BC039897.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched), mRNA (cDNA clone IMAGE:5196107),
            partial cds
          Length = 2860

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  ctcacaggctgggcaccctc 193
            ||||||||||||||||||||
Sbjct: 2416 ctcacaggctgggcaccctc 2397
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>emb|AL832541.1|HSM803850 Homo sapiens mRNA; cDNA DKFZp547A0817 (from clone DKFZp547A0817)
          Length = 3149

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  ctcacaggctgggcaccctc 193
            ||||||||||||||||||||
Sbjct: 2751 ctcacaggctgggcaccctc 2732
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>emb|AL806524.10| Mouse DNA sequence from clone RP23-158E10 on chromosome 4, complete
             sequence
          Length = 211513

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    tcacacagcacatcatgctg 107
             ||||||||||||||||||||
Sbjct: 62126 tcacacagcacatcatgctg 62107
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>dbj|AK127312.1| Homo sapiens cDNA FLJ45381 fis, clone BRHIP3021019, highly  similar
            to Protein-tyrosine phosphatase, non-receptor type 5 (EC
            3.1.3.48)
          Length = 3871

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  ctcacaggctgggcaccctc 193
            ||||||||||||||||||||
Sbjct: 3491 ctcacaggctgggcaccctc 3472
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>dbj|AK090923.1| Homo sapiens cDNA FLJ33604 fis, clone BRAMY2015251, highly similar to
            PROTEIN-TYROSINE PHOSPHATASE STRIATUM-ENRICHED (EC
            3.1.3.48)
          Length = 2965

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  ctcacaggctgggcaccctc 193
            ||||||||||||||||||||
Sbjct: 2617 ctcacaggctgggcaccctc 2598
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>dbj|AK027333.1| Homo sapiens cDNA FLJ14427 fis, clone HEMBA1006173
          Length = 1074

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 174 ctcacaggctgggcaccctc 193
           ||||||||||||||||||||
Sbjct: 694 ctcacaggctgggcaccctc 675
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>dbj|AK055450.1| Homo sapiens cDNA FLJ30888 fis, clone FEBRA2005079, highly similar to
            PROTEIN-TYROSINE PHOSPHATASE STRIATUM-ENRICHED (EC
            3.1.3.48)
          Length = 2299

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  ctcacaggctgggcaccctc 193
            ||||||||||||||||||||
Sbjct: 1919 ctcacaggctgggcaccctc 1900
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>gb|AC103974.6| Homo sapiens chromosome 11, clone RP11-1081L13, complete sequence
          Length = 189230

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    ctcacaggctgggcaccctc 193
              ||||||||||||||||||||
Sbjct: 153760 ctcacaggctgggcaccctc 153741
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>emb|BX530075.7| Zebrafish DNA sequence from clone CH211-1O14 in linkage group 5, complete
              sequence
          Length = 176078

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    cgcacgcacgcatgcagctg 130
              ||||||||||||||||||||
Sbjct: 134568 cgcacgcacgcatgcagctg 134587
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>gb|BC047349.1| Mus musculus, clone IMAGE:3595895, mRNA
          Length = 1680

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  ctcacaggctgggcaccctc 193
            ||||||||||||||||||||
Sbjct: 1232 ctcacaggctgggcaccctc 1213
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>dbj|AB060245.1| Macaca fascicularis brain cDNA clone:QflA-15249, full insert sequence
          Length = 2837

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  ctcacaggctgggcaccctc 193
            ||||||||||||||||||||
Sbjct: 2441 ctcacaggctgggcaccctc 2422
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>gb|U68715.1|BFU68715 Botryotinia fuckeliana endopolygalacturonase 1 (BcPGA1) gene,
           complete cds
          Length = 2291

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 132 gcatcaacagccgacggcgg 151
           ||||||||||||||||||||
Sbjct: 669 gcatcaacagccgacggcgg 688
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>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
          Length = 949626

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 222    ggttgttgccgaaggggtcgctga 245
              ||||| ||||||||||||||||||
Sbjct: 254994 ggttggtgccgaaggggtcgctga 255017
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>gb|AD000005.1|MSGY42 Mycobacterium tuberculosis sequence from clone y42
          Length = 36526

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   ctcggcggcgccggaaatga 212
             ||||||||||||||||||||
Sbjct: 15459 ctcggcggcgccggaaatga 15440
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>emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-991C1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177792

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    gcacgcatgcagctgagcat 135
              ||||||||||||||||||||
Sbjct: 109052 gcacgcatgcagctgagcat 109033
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>gb|M12152.1|LGIAB19A Lemna gibba chlorophyll a/b apoprotein gene, complete cds
          Length = 1913

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                        
Query: 223  gttgttgccgaaggggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggt 282
            ||||||| ||| |||||||  || |||| ||  ||||||||||| ||| |||| ||||||
Sbjct: 1495 gttgttggcgacggggtcggcgatgtggtcggccaggttctcgatggggcccttgccggt 1436

                
Query: 283  gacg 286
            ||||
Sbjct: 1435 gacg 1432


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,528,848
Number of Sequences: 3902068
Number of extensions: 2528848
Number of successful extensions: 40309
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40192
Number of HSP's gapped (non-prelim): 110
length of query: 294
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 272
effective length of database: 17,147,199,772
effective search space: 4664038337984
effective search space used: 4664038337984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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