ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_115353.3| Arabidopsis thaliana ATPDIL1-3; electron transp... 38 3.4
2gb|AC139043.6| Mus musculus chromosome 3, clone RP23-321I11, com... 38 3.4
3gb|BT000172.1| Arabidopsis thaliana protein disulfide-isomerase-... 38 3.4
4emb|AL132970.2|ATT15C9 Arabidopsis thaliana DNA chromosome 3, BA... 38 3.4
5emb|AL049655.2|ATF28P10 Arabidopsis thaliana DNA chromosome 3, B... 38 3.4
6emb|AJ271376.1|ATH271376 Arabidopsis thaliana mRNA for ERp72 (pd... 38 3.4
7gb|AY093115.1| Arabidopsis thaliana protein disulfide-isomerase-... 38 3.4
8emb|BX823657.1|CNS0A6MM Arabidopsis thaliana Full-length cDNA Co... 38 3.4
9dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 3.4

>ref|NM_115353.3| Arabidopsis thaliana ATPDIL1-3; electron transporter/ isomerase/
           thiol-disulfide exchange intermediate AT3G54960
           (ATPDIL1-3) mRNA, complete cds
          Length = 1960

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 54  aaaactgagatcgtcttcc 72
           |||||||||||||||||||
Sbjct: 780 aaaactgagatcgtcttcc 762



to top

>gb|AC139043.6| Mus musculus chromosome 3, clone RP23-321I11, complete sequence
          Length = 194537

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     tggtcagcagcacatttca 24
             |||||||||||||||||||
Sbjct: 14248 tggtcagcagcacatttca 14230



to top

>gb|BT000172.1| Arabidopsis thaliana protein disulfide-isomerase-like protein
           (At3g54960) mRNA, complete cds
          Length = 1817

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 54  aaaactgagatcgtcttcc 72
           |||||||||||||||||||
Sbjct: 762 aaaactgagatcgtcttcc 744



to top

>emb|AL132970.2|ATT15C9 Arabidopsis thaliana DNA chromosome 3, BAC clone T15C9
          Length = 84601

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    aaaactgagatcgtcttcc 72
             |||||||||||||||||||
Sbjct: 18281 aaaactgagatcgtcttcc 18299



to top

>emb|AL049655.2|ATF28P10 Arabidopsis thaliana DNA chromosome 3, BAC clone F28P10
          Length = 90736

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 54    aaaactgagatcgtcttcc 72
             |||||||||||||||||||
Sbjct: 21868 aaaactgagatcgtcttcc 21850



to top

>emb|AJ271376.1|ATH271376 Arabidopsis thaliana mRNA for ERp72 (pdi72 gene)
          Length = 2030

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 54  aaaactgagatcgtcttcc 72
           |||||||||||||||||||
Sbjct: 838 aaaactgagatcgtcttcc 820



to top

>gb|AY093115.1| Arabidopsis thaliana protein disulfide-isomerase-like protein
           (At3g54960) mRNA, complete cds
          Length = 1888

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 54  aaaactgagatcgtcttcc 72
           |||||||||||||||||||
Sbjct: 780 aaaactgagatcgtcttcc 762



to top

>emb|BX823657.1|CNS0A6MM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS62ZH05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1857

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 54  aaaactgagatcgtcttcc 72
           |||||||||||||||||||
Sbjct: 764 aaaactgagatcgtcttcc 746



to top

>dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-344L21, complete
             sequence
          Length = 186656

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     ttggtcagcagcacatttc 23
             |||||||||||||||||||
Sbjct: 90192 ttggtcagcagcacatttc 90210


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 568,959
Number of Sequences: 3902068
Number of extensions: 568959
Number of successful extensions: 31712
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31703
Number of HSP's gapped (non-prelim): 9
length of query: 82
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 61
effective length of database: 17,151,101,840
effective search space: 1046217212240
effective search space used: 1046217212240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top