Clone Information

BLAST Search Result

Clone Name	rbaet98b06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Co...	39	0.003
2	7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) ...	37	0.013
3	SOX4_HUMAN (Q06945) Transcription factor SOX-4	31	0.92
4	CENPH_HUMAN (Q9H3R5) Centromere protein H (Kinetochore protein C...	30	1.2
5	SASH1_HUMAN (O94885) SAM and SH3 domain-containing protein 1 (Pr...	30	1.2
6	EPAS1_HUMAN (Q99814) Endothelial PAS domain-containing protein 1...	30	1.6
7	EPAS1_RAT (Q9JHS1) Endothelial PAS domain-containing protein 1 (...	30	1.6
8	ADCY5_CANFA (P30803) Adenylate cyclase type 5 (EC 4.6.1.1) (Aden...	30	2.0
9	LMP2_EBV (P13285) Latent membrane protein 2 (Terminal protein)	30	2.0
10	EPAS1_MOUSE (P97481) Endothelial PAS domain-containing protein 1...	29	2.7
11	COL13_CAEEL (P20631) Cuticle collagen 13 precursor	29	2.7
12	COL12_CAEEL (P20630) Cuticle collagen 12 precursor	29	2.7
13	DBPA_XENLA (Q5PQD5) DNA-binding protein A (Cold shock domain-con...	29	2.7
14	DBPA_RAT (Q62764) DNA-binding protein A (Cold shock domain-conta...	29	2.7
15	DBPA_MOUSE (Q9JKB3) DNA-binding protein A (Cold shock domain-con...	29	2.7
16	D103A_PANTR (Q95JD2) Beta-defensin 103A precursor (Defensin, bet...	29	3.5
17	D103A_HUMAN (P81534) Beta-defensin 103A precursor (Beta-defensin...	29	3.5
18	PGCA_BOVIN (P13608) Aggrecan core protein precursor (Cartilage-s...	28	4.6
19	SOX4_MOUSE (Q06831) Transcription factor SOX-4	28	4.6
20	HXD3_MOUSE (P09027) Homeobox protein Hox-D3 (Hox-4.1) (MH-19)	28	4.6
21	CXGS_CONGE (P15472) Conotoxin GS (CGS)	28	4.6
22	FMN1B_MOUSE (Q05859) Formin-1 isoform IV (Limb deformity protein)	28	4.6
23	LARP1_HUMAN (Q6PKG0) La-related protein 1 (La ribonucleoprotein ...	28	4.6
24	DPOLA_LEIDO (O00874) DNA polymerase alpha catalytic subunit (EC ...	28	4.6
25	FMN1A_MOUSE (Q05860) Formin-1 isoforms I/II/III (Limb deformity ...	28	4.6
26	DISC1_HUMAN (Q9NRI5) Disrupted in schizophrenia 1 protein	28	4.6
27	FUR1C_DROME (P30430) Furin-like protease 1, isoform 1-CRR precur...	28	6.0
28	FUR11_DROME (P26016) Furin-like protease 1, isoforms 1/1-X/2 pre...	28	6.0
29	AMOL2_MOUSE (Q8K371) Angiomotin-like protein 2	28	6.0
30	DEND_HUMAN (O94850) Dendrin	28	6.0
31	CECR6_HUMAN (Q9BXQ6) Cat eye syndrome critical region protein 6	28	6.0
32	KIC1_YEAST (P38692) Serine/threonine-protein kinase KIC1 (EC 2.7...	28	6.0
33	OPSR_CANFA (O18914) Red-sensitive opsin (Red cone photoreceptor ...	28	6.0
34	AXUD1_HUMAN (Q96S65) Axin-1 up-regulated gene 1 protein (TGF-bet...	28	6.0
35	OPSG_CAVPO (Q9R024) Green-sensitive opsin (Green cone photorecep...	28	6.0
36	TROAP_HUMAN (Q12815) Trophinin-associated protein (Tastin) (Trop...	28	6.0
37	AAPK1_RAT (P54645) 5'-AMP-activated protein kinase catalytic sub...	28	7.8
38	AAPK1_MOUSE (Q5EG47) 5'-AMP-activated protein kinase catalytic s...	28	7.8
39	OPSL_CALJA (P34989) Opsin, longwave 563 nm (Fragment)	28	7.8
40	AAPK1_PONPY (Q5RDH5) 5'-AMP-activated protein kinase catalytic s...	28	7.8
41	AAPK1_HUMAN (Q13131) 5'-AMP-activated protein kinase catalytic s...	28	7.8

>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic|
           7S globulin high-kDa subunit; Basic 7S globulin low-kDa
           subunit]
          Length = 427

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = -2

Query: 291 PRTSVVIGGHTMEDNLLEFDLQRARLGFSSSLL 193
           PR  + +G   +E+NL+ FDL R+R+GFS+S L
Sbjct: 379 PRAEITLGARQLEENLVVFDLARSRVGFSTSSL 411

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>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:|
           Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin
           2 low-kDa subunit]
          Length = 433

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = -2

Query: 291 PRTSVVIGGHTMEDNLLEFDLQRARLGFSSSLL 193
           PR  V +G   +E+ L+ FDL R+R+GFS+S L
Sbjct: 385 PRAEVTLGTRQLEEKLMVFDLARSRVGFSTSSL 417

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>SOX4_HUMAN (Q06945) Transcription factor SOX-4|
          Length = 474

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
 Frame = +3

Query: 138 PFHLLSTQGGSCCRSSAGTAGRS*TRASPAADRTPAG-------CPPSCAPRSPPTSA 290
           P  L   +G  C   +   +GRS   +SPAA R+PA           S AP S P+ A
Sbjct: 321 PLGLYEEEGAGCSPDAPSLSGRSSAASSPAAGRSPADHRGYASLRAASPAPSSAPSHA 378

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>CENPH_HUMAN (Q9H3R5) Centromere protein H (Kinetochore protein CENP-H)|
          Length = 247

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -1

Query: 292 PADVGGDRGAHDGGQPAGVRSAAGEARVQLLPAVPADDLQQL 167
           PAD GG+  A    Q AG ++A  E R+ LL  + A   QQL
Sbjct: 13  PADSGGEGRAGGPPQVAGAQAACSEDRMTLLLRLRAQTKQQL 54

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>SASH1_HUMAN (O94885) SAM and SH3 domain-containing protein 1 (Proline-glutamate|
            repeat-containing protein)
          Length = 1247

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 8/33 (24%)
 Frame = +3

Query: 213  RASPAADRTPAGCPPSCAPR--------SPPTS 287
            R SPA+  +P+ CPP+ APR        SPP++
Sbjct: 1023 RGSPASPTSPSDCPPALAPRPLSGQAPGSPPST 1055

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>EPAS1_HUMAN (Q99814) Endothelial PAS domain-containing protein 1 (EPAS-1)|
           (Member of PAS protein 2) (MOP2) (Hypoxia-inducible
           factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) (HIF-1
           alpha-like factor) (HLF)
          Length = 870

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 239 SSICSGRGS-GSAPPCCSGRRPATTSALGRQQMEWHPD 129
           SSI    GS  S PPCC       +S  GR   +W PD
Sbjct: 605 SSIFFDAGSKASLPPCCGQASTPLSSMGGRSNTQWPPD 642

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>EPAS1_RAT (Q9JHS1) Endothelial PAS domain-containing protein 1 (EPAS-1)|
           (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2
           alpha)
          Length = 874

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 239 SSICSGRGS-GSAPPCCSGRRPATTSALGRQQMEWHPD 129
           S+I    GS GS PPCC       +S  GR    W PD
Sbjct: 604 STIFFDAGSKGSLPPCCGQASTPLSSMGGRSNTPWPPD 641

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>ADCY5_CANFA (P30803) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase|
           type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5)
           (Ca(2+)-inhibitable adenylyl cyclase)
          Length = 1265

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 280 GGDRGAHDGGQPAGVRSAAGEARVQLLPA--VPADDLQQL 167
           GGDRGA DG  PAG   A   A +Q+  +   P+D L++L
Sbjct: 194 GGDRGARDGDGPAG-PGACCRALLQIFRSKKFPSDKLERL 232

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>LMP2_EBV (P13285) Latent membrane protein 2 (Terminal protein)|
          Length = 497

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = -1

Query: 295 GPADVGGDRGAHDGGQPAGVRSAAGEARVQLLPAVPADDLQQL-----PPWVDNKW-NGI 134
           GP   GGD   +DGG  +   SA+G +     P  P D+ ++      PP+ D  W NG 
Sbjct: 12  GPPSPGGDPDGYDGGNNSQYPSASGSS--GNTPTPPNDEERESNEEPPPPYEDPYWGNGD 69

Query: 133 R 131
           R
Sbjct: 70  R 70

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>EPAS1_MOUSE (P97481) Endothelial PAS domain-containing protein 1 (EPAS-1)|
           (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2
           alpha) (HIF-1 alpha-like factor) (MHLF) (HIF-related
           factor) (HRF)
          Length = 874

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 239 SSICSGRGS-GSAPPCCSGRRPATTSALGRQQMEWHPD 129
           SSI    GS GS  PCC       +S  GR   +W PD
Sbjct: 604 SSIFFDAGSKGSLSPCCGQASTPLSSMGGRSNTQWPPD 641

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>COL13_CAEEL (P20631) Cuticle collagen 13 precursor|
          Length = 316

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 156 TQGGSCCRSSAGTAGRS*TRASPAADRTPAGCPPSCAPRSPPTSA 290
           + GGSCC   +G AG +    SP  D  P       AP +P   A
Sbjct: 117 SSGGSCCSCGSGAAGPA---GSPGQDGAPGNDGAPGAPGNPGQDA 158

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>COL12_CAEEL (P20630) Cuticle collagen 12 precursor|
          Length = 316

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 156 TQGGSCCRSSAGTAGRS*TRASPAADRTPAGCPPSCAPRSPPTSA 290
           + GGSCC   +G AG +    SP  D  P       AP +P   A
Sbjct: 117 SSGGSCCSCGSGAAGPA---GSPGQDGAPGNDGAPGAPGNPGQDA 158

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>DBPA_XENLA (Q5PQD5) DNA-binding protein A (Cold shock domain-containing|
           protein A)
          Length = 361

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +3

Query: 180 SSAGTAGRS*TRASPAADRTPAGCPPSCAPRSPPTS 287
           S AG A    T    AA   PA  PP  AP+SP  S
Sbjct: 2   SEAGEATTGGTTLPQAAADAPAAAPPDPAPKSPAAS 37

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>DBPA_RAT (Q62764) DNA-binding protein A (Cold shock domain-containing|
           protein A) (Muscle Y-box protein YB2) (Y-box-binding
           protein-A) (RYB-A)
          Length = 361

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +3

Query: 180 SSAGTAGRS*TRASPAADRTPAGCPPSCAPRSPPTS 287
           S AG A    T    AA   PA  PP  AP+SP  S
Sbjct: 2   SEAGEATTGGTTLPQAAADAPAAAPPDPAPKSPAAS 37

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>DBPA_MOUSE (Q9JKB3) DNA-binding protein A (Cold shock domain-containing|
           protein A) (Y-box protein 3)
          Length = 361

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +3

Query: 180 SSAGTAGRS*TRASPAADRTPAGCPPSCAPRSPPTS 287
           S AG A    T    AA   PA  PP  AP+SP  S
Sbjct: 2   SEAGEATTGGTTLPQAAADAPAAAPPDPAPKSPAAS 37

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>D103A_PANTR (Q95JD2) Beta-defensin 103A precursor (Defensin, beta 103A)|
           (Defensin, beta 103) (Beta-defensin 3) (DEFB-3) (BD-3)
           (cBD-3)
          Length = 67

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +3

Query: 30  LFKQPKQNPGG--NTQTNFDCNLNNASTHIIFCNPIRMPFHLLSTQGGSCCR 179
           LF  P    GG  NT   + C +      ++ C P        ST+G  CCR
Sbjct: 13  LFLVPVPGHGGIINTLQKYYCRVRGGRCAVLTCLPKEEQIGKCSTRGRKCCR 64

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>D103A_HUMAN (P81534) Beta-defensin 103A precursor (Beta-defensin 3) (DEFB-3)|
           (BD-3) (hBD-3) (HBD3) (Defensin-like protein)
          Length = 67

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +3

Query: 30  LFKQPKQNPGG--NTQTNFDCNLNNASTHIIFCNPIRMPFHLLSTQGGSCCR 179
           LF  P    GG  NT   + C +      ++ C P        ST+G  CCR
Sbjct: 13  LFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCR 64

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>PGCA_BOVIN (P13608) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2364

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 109  ISSSAIPSGCHSICCLPKAEVVAGRLPEQQGGAEPEP 219
            +  S++P         P+AEV A   PE  GGA   P
Sbjct: 1924 VEVSSVPESSGETSAYPEAEVGASAAPEASGGASGSP 1960

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>SOX4_MOUSE (Q06831) Transcription factor SOX-4|
          Length = 440

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
 Frame = +3

Query: 138 PFHLLSTQGGSCCRSSAGTAGRS*TRASPAADRTPAG-------CPPSCAPRSPPTSA 290
           P  L    G  C       +GRS   +SPAA R+PA           S AP S P+ A
Sbjct: 289 PLGLYEDGGPGCSPDGRSLSGRSSAASSPAASRSPADHRGYASLRAASPAPSSAPSHA 346

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>HXD3_MOUSE (P09027) Homeobox protein Hox-D3 (Hox-4.1) (MH-19)|
          Length = 417

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
 Frame = +3

Query: 75  NFDCNLNNASTHIIFCNPIRMPFHLLSTQGGSCCRSSAGTAGRS*TRASPA---ADRTPA 245
           + D +  +++  I    P+R P H  +   GSC R   G +        P    +++ P 
Sbjct: 42  SLDSDYPSSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGNQPPGLNSEQQPP 101

Query: 246 GCPPSCAPRSPPTS 287
             PP   P  PP+S
Sbjct: 102 QPPPPPPPTLPPSS 115

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>CXGS_CONGE (P15472) Conotoxin GS (CGS)|
          Length = 34

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -3

Query: 230 CSGRGSGSAPPCCSGRR 180
           CSGRGS   P CC G R
Sbjct: 2   CSGRGSRCPPQCCMGLR 18

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>FMN1B_MOUSE (Q05859) Formin-1 isoform IV (Limb deformity protein)|
          Length = 1206

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 189 GTAGRS*TRASPAADRTPAGCPPSCAPRSPPTSAG 293
           GT+  S  + SP A  TP   PP   P  PP   G
Sbjct: 633 GTSSSSQQKISPPAPPTPPPLPPPLIPPPPPLPPG 667

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>LARP1_HUMAN (Q6PKG0) La-related protein 1 (La ribonucleoprotein domain family|
           member 1)
          Length = 1096

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -1

Query: 295 GPADVGGDRGAHDGGQPAGVRSAAGEARVQLLPAVPADDLQQLPPWVDN 149
           GPA   G+ G  + G   G   AAG  R   + A P     ++ PW  N
Sbjct: 86  GPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPP----PKVNPWTKN 130

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>DPOLA_LEIDO (O00874) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)|
          Length = 1339

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 130 SGCHSICCLPKAEVVAGRLPEQQGGAEPEPRPLQIELQQ 246
           SG  +I  LP A+  A +L +   GA+P P+P Q  L Q
Sbjct: 48  SGDLTIPQLPSAKKAAKKLRKPPSGAKPTPKPKQQTLAQ 86

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>FMN1A_MOUSE (Q05860) Formin-1 isoforms I/II/III (Limb deformity protein)|
          Length = 1468

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 189 GTAGRS*TRASPAADRTPAGCPPSCAPRSPPTSAG 293
           GT+  S  + SP A  TP   PP   P  PP   G
Sbjct: 859 GTSSSSQQKISPPAPPTPPPLPPPLIPPPPPLPPG 893

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>DISC1_HUMAN (Q9NRI5) Disrupted in schizophrenia 1 protein|
          Length = 854

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 222 PAADRTPAGCPPSCAPRSPPTSAG 293
           P+A+ +   C P C P  PPT  G
Sbjct: 178 PSAELSSNSCSPGCGPEVPPTPPG 201

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>FUR1C_DROME (P30430) Furin-like protease 1, isoform 1-CRR precursor (EC|
           3.4.21.75) (Furin-1) (Kex2-like endoprotease 1)
           (dKLIP-1)
          Length = 1101

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
 Frame = +3

Query: 9   NRSISC*LFK-----QPKQNPGGNTQTNFDCNLNN--ASTHIIFCNPIRMPFHL-LSTQG 164
           N +  C LFK     Q KQ   G + +    N +   A T  +F   ++    + L    
Sbjct: 77  NFNFDCNLFKTSFLTQHKQKRSGKSSSKSKSNRSRPLAKTKAVFLLALQFSAVVFLCNIN 136

Query: 165 GSCCRSSAGTAGRS*TRASPAADRTPAGCPPSCA--PRSPPTSA 290
                 S  TA  S   +SPAA  +    PP+ A  P  PP+SA
Sbjct: 137 VGFVAGSVATAASSAGGSSPAAPSSAPSSPPTVAVPPPPPPSSA 180

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>FUR11_DROME (P26016) Furin-like protease 1, isoforms 1/1-X/2 precursor (EC|
           3.4.21.75) (Furin-1) (Kex2-like endoprotease 1)
           (dKLIP-1)
          Length = 1269

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
 Frame = +3

Query: 9   NRSISC*LFK-----QPKQNPGGNTQTNFDCNLNN--ASTHIIFCNPIRMPFHL-LSTQG 164
           N +  C LFK     Q KQ   G + +    N +   A T  +F   ++    + L    
Sbjct: 77  NFNFDCNLFKTSFLTQHKQKRSGKSSSKSKSNRSRPLAKTKAVFLLALQFSAVVFLCNIN 136

Query: 165 GSCCRSSAGTAGRS*TRASPAADRTPAGCPPSCA--PRSPPTSA 290
                 S  TA  S   +SPAA  +    PP+ A  P  PP+SA
Sbjct: 137 VGFVAGSVATAASSAGGSSPAAPSSAPSSPPTVAVPPPPPPSSA 180

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>AMOL2_MOUSE (Q8K371) Angiomotin-like protein 2|
          Length = 772

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 210 TRASPAADRTPAGCPPSCAPRSPPTSAG 293
           T A PA DR PA  PP+ AP    T  G
Sbjct: 688 TDARPAGDRVPAEEPPATAPLPAHTKHG 715

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>DEND_HUMAN (O94850) Dendrin|
          Length = 657

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 165 GSCCRSSAGTAGRS*TRASPAADRTPAGCPPSCAPRS 275
           GS     A   G + T  +PA   T A C P  APRS
Sbjct: 274 GSDSHPQAKATGSAGTEIAPAGSATAAPCAPHPAPRS 310

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>CECR6_HUMAN (Q9BXQ6) Cat eye syndrome critical region protein 6|
          Length = 578

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 213 RASPAADRTPAGCPPSCAPRSPPTSAG 293
           RASP+  R   G PPS  P  PP   G
Sbjct: 524 RASPSRARGGYGAPPSAPPPPPPPPQG 550

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>KIC1_YEAST (P38692) Serine/threonine-protein kinase KIC1 (EC 2.7.11.1) (Kinase|
            that interacts with CDC31) (N-rich kinase 1)
          Length = 1080

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +1

Query: 37   NSQNKTQGETHKQILTAI*TTQAHISSSAIPSGCHSICCLPKAEVVAGRLPEQQGGAEPE 216
            N+  K    T     +A  +T A IS   IPSG      L  A   A  +     G  P 
Sbjct: 956  NTTIKANSTTIATSSSAAASTTAPISQQTIPSGTQFNHILSSAATAANSVNSLGFGMCPP 1015

Query: 217  PRPLQIEL 240
            P+ LQ+E+
Sbjct: 1016 PQSLQMEM 1023

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>OPSR_CANFA (O18914) Red-sensitive opsin (Red cone photoreceptor pigment)|
           (Fragment)
          Length = 273

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 164 ALGRQQMEWHPDGIAEDDMCACVVQIAVKICLCVSPWVLFWLF 36
           A+ +QQ E      AE ++   VV + +  CLC  P+  F  F
Sbjct: 201 AVAKQQKESESTQKAEKEVTRMVVVMVLAYCLCWGPYTFFACF 243

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>AXUD1_HUMAN (Q96S65) Axin-1 up-regulated gene 1 protein (TGF-beta-induced|
           apoptosis protein 3) (TAIP-3) (URAX1 protein)
          Length = 589

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 109 ISSSAIPSGCHSICCLPKAEVVAGRLPEQQGGAEPEPRP 225
           +SSS+  SGC S  C P + V      E++G  +  P P
Sbjct: 19  VSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLP 57

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>OPSG_CAVPO (Q9R024) Green-sensitive opsin (Green cone photoreceptor pigment)|
          Length = 364

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 164 ALGRQQMEWHPDGIAEDDMCACVVQIAVKICLCVSPWVLFWLF 36
           A+ +QQ E      AE ++   VV + +  CLC  P+  F  F
Sbjct: 248 AVAKQQKESESTQKAEKEVTRMVVVMVLAYCLCWGPYAFFACF 290

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>TROAP_HUMAN (Q12815) Trophinin-associated protein (Tastin) (Trophinin-assisting|
           protein)
          Length = 778

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -3

Query: 209 SAPPCCSGRRPATTSALGRQQMEWHP 132
           S PPCCS   PATTS +   Q   HP
Sbjct: 657 SLPPCCSQWAPATTSLIFSSQ---HP 679

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>AAPK1_RAT (P54645) 5'-AMP-activated protein kinase catalytic subunit alpha-1|
           (EC 2.7.11.1) (AMPK alpha-1 chain)
          Length = 548

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 110 YHLLQSHPDAIPFVVYPRRKLLQVVCRNSREELNPSLAR 226
           +HL + HP+ +PF+V    +      R++ +ELNP  ++
Sbjct: 354 HHLTRPHPERVPFLVAETPR-----ARHTLDELNPQKSK 387

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>AAPK1_MOUSE (Q5EG47) 5'-AMP-activated protein kinase catalytic subunit alpha-1|
           (EC 2.7.11.1) (AMPK alpha-1 chain)
          Length = 548

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 110 YHLLQSHPDAIPFVVYPRRKLLQVVCRNSREELNPSLAR 226
           +HL + HP+ +PF+V    +      R++ +ELNP  ++
Sbjct: 354 HHLTRPHPERVPFLVAETPR-----ARHTLDELNPQKSK 387

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>OPSL_CALJA (P34989) Opsin, longwave 563 nm (Fragment)|
          Length = 350

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 164 ALGRQQMEWHPDGIAEDDMCACVVQIAVKICLCVSPWVLFWLF 36
           A+ +QQ E      AE ++   VV + V  C+C  P+  F  F
Sbjct: 241 AVAKQQKESESTQKAEKEVTRMVVVMIVAYCVCWGPYTFFACF 283

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>AAPK1_PONPY (Q5RDH5) 5'-AMP-activated protein kinase catalytic subunit alpha-1|
           (EC 2.7.11.1) (AMPK alpha-1 chain)
          Length = 550

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 110 YHLLQSHPDAIPFVVYPRRKLLQVVCRNSREELNPSLAR 226
           +HL + HP+ +PF+V    +      R++ +ELNP  ++
Sbjct: 356 HHLTRPHPERVPFLVAETPR-----ARHTLDELNPQKSK 389

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>AAPK1_HUMAN (Q13131) 5'-AMP-activated protein kinase catalytic subunit alpha-1|
           (EC 2.7.11.1) (AMPK alpha-1 chain)
          Length = 550

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 110 YHLLQSHPDAIPFVVYPRRKLLQVVCRNSREELNPSLAR 226
           +HL + HP+ +PF+V    +      R++ +ELNP  ++
Sbjct: 356 HHLTRPHPERVPFLVAETPR-----ARHTLDELNPQKSK 389


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,564,627
Number of Sequences: 219361
Number of extensions: 1056254
Number of successful extensions: 5088
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 4387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5072
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result