ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet98b04 |
|---|---|
| Clone Library Name | barley_pub |
>PSBP_LYCES (P29795) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 74.3 bits (181), Expect = 7e-14 Identities = 34/38 (89%), Positives = 36/38 (94%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV DGKLY+CKAQAGDKRWFKGAKKFVENAA SFS+A Sbjct: 221 ATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 258
>PSBP_SOLTU (P93566) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 74.3 bits (181), Expect = 7e-14 Identities = 34/38 (89%), Positives = 36/38 (94%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV DGKLY+CKAQAGDKRWFKGAKKFVENAA SFS+A Sbjct: 223 ATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 260
>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 73.2 bits (178), Expect = 2e-13 Identities = 33/38 (86%), Positives = 36/38 (94%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV+DGKLY+CKAQAGDKRWFKGAKKFVE+AA SFS A Sbjct: 228 ATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSFSAA 265
>PSBP_SPIOL (P12302) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 267 Score = 72.4 bits (176), Expect = 3e-13 Identities = 33/38 (86%), Positives = 35/38 (92%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV DGKLY+CKAQAGDKRWFKGAKKFVE+A SFSVA Sbjct: 230 ATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA 267
>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 265 Score = 72.0 bits (175), Expect = 3e-13 Identities = 33/38 (86%), Positives = 35/38 (92%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV DGKLY+CKAQAGDKRWFKGAKKFVEN A SFS+A Sbjct: 228 ATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265
>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23) Length = 263 Score = 72.0 bits (175), Expect = 3e-13 Identities = 33/38 (86%), Positives = 35/38 (92%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV DGKLY+CKAQAGDKRWFKGA+KFVE AA SFSVA Sbjct: 226 ATVNDGKLYICKAQAGDKRWFKGARKFVEGAASSFSVA 263
>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 266 Score = 72.0 bits (175), Expect = 3e-13 Identities = 33/38 (86%), Positives = 35/38 (92%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV DGKLY+CKAQAGDKRWFKGAKKFVEN A SFS+A Sbjct: 229 ATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 266
>PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 71.6 bits (174), Expect = 4e-13 Identities = 36/38 (94%), Positives = 36/38 (94%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATVADGKLYVCKAQ DKRWFKGAKKFVENAAGSFSVA Sbjct: 222 ATVADGKLYVCKAQR-DKRWFKGAKKFVENAAGSFSVA 258
>PSBP_PEA (P16059) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 259 Score = 71.2 bits (173), Expect = 6e-13 Identities = 32/38 (84%), Positives = 35/38 (92%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV DGKLY+CKAQAGDKRWFKGA+KFVE+ A SFSVA Sbjct: 222 ATVKDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA 259
>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 70.9 bits (172), Expect = 8e-13 Identities = 33/38 (86%), Positives = 35/38 (92%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV GKLY+CKAQAGDKRWFKGA+KFVENAA SFSVA Sbjct: 228 ATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 265
>PSBP1_TOBAC (Q7DM39) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 268 Score = 70.9 bits (172), Expect = 8e-13 Identities = 33/38 (86%), Positives = 35/38 (92%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV GKLY+CKAQAGDKRWFKGA+KFVENAA SFSVA Sbjct: 231 ATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 268
>PSBP_FRIAG (O49080) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 264 Score = 69.3 bits (168), Expect = 2e-12 Identities = 31/38 (81%), Positives = 34/38 (89%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV DGKLY+CKAQAGDKRWFKGAKKFVE+ SF+VA Sbjct: 227 ATVTDGKLYICKAQAGDKRWFKGAKKFVESTTTSFNVA 264
>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 263 Score = 68.9 bits (167), Expect = 3e-12 Identities = 32/38 (84%), Positives = 35/38 (92%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV GKLY+CKAQAGDKRWFKGA+KFVE+AA SFSVA Sbjct: 226 ATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263
>PSBP_BRAJU (Q96334) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (Fragment) Length = 217 Score = 67.8 bits (164), Expect = 6e-12 Identities = 32/38 (84%), Positives = 33/38 (86%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV GKLY+CKAQAGDKRWFKGA KFVE AA SFSVA Sbjct: 180 ATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 217
>PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 67.8 bits (164), Expect = 6e-12 Identities = 32/38 (84%), Positives = 33/38 (86%) Frame = -1 Query: 335 ATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 222 ATV GKLY+CKAQAGDKRWFKGA KFVE AA SFSVA Sbjct: 223 ATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 260
>PSBP_CHLRE (P11471) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) Length = 245 Score = 46.6 bits (109), Expect = 2e-05 Identities = 24/38 (63%), Positives = 27/38 (71%), Gaps = 1/38 (2%) Frame = -1 Query: 335 ATV-ADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSV 225 ATV +D KLY+ K Q GDKRWFKGAKK A SF+V Sbjct: 207 ATVGSDNKLYIIKIQIGDKRWFKGAKKEAMGAFDSFTV 244
>NLAL1_ARATH (Q8VZT0) Putative H/ACA ribonucleoprotein complex subunit 1-like| protein 1 Length = 202 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 141 HACPGSVSTRCFPEEIP-LNSPIGHVYLCDTEGSCGVLDELLGALEPPLVS 290 HAC G T+ E+IP N+PI YL + + G +DE+ G + L S Sbjct: 66 HACEGDAVTKLSQEKIPHFNAPI---YL-ENKTQIGKVDEIFGPINESLFS 112
>TRRAP_HUMAN (Q9Y4A5) Transformation/transcription domain-associated protein| (350/400 kDa PCAF-associated factor) (PAF350/400) (STAF40) (Tra1 homolog) Length = 3859 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = +3 Query: 174 FPEEIPLNSP----IGHVYLCDTEGSCGVLDELLGALEPPLVSGLRLA 305 FPE++ LN+ + +VY +T EL LEP +SGLR A Sbjct: 2407 FPEDLELNAQFLDLVNYVYRDETLSG----SELTAKLEPAFLSGLRCA 2450
>RF1_PICTO (Q6KZ24) Peptide chain release factor subunit 1 (Translation| termination factor aRF1) Length = 410 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = +3 Query: 87 REIDLLVHPSSCTNQRNTHACPGSVSTRCFPEEIPLNSPIGHVYLCDTEGS 239 + +DLL+ + +R T+ CP T+ F E+ P +P LCD + S Sbjct: 309 KNLDLLIISDTLKKRRYTYKCPVCNDTKTFTEK-PRETP-----LCDKDNS 353 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,308,196 Number of Sequences: 219361 Number of extensions: 852228 Number of successful extensions: 1655 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1633 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1654 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
