ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MURE_WOLSU (Q7M8F9) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-... 28 4.8

>MURE_WOLSU (Q7M8F9) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 434

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 18  H*VTIGSYFTNHQVPAALLCDRTSIIIN-KGSLRYPLIHHSSYKTKARSLHG 170
           H +   + F +   P  +  D +    N + +L Y + H SSY  KA SLHG
Sbjct: 173 HYIQTKNSFFDDSTPKLINKDESKAKFNLQNALSYGIEHPSSYHVKAYSLHG 224


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,342,441
Number of Sequences: 219361
Number of extensions: 497270
Number of successful extensions: 1009
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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