ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet98a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane ... 33 0.20
2PIP1_ATRCA (P42767) Aquaporin PIP-type 33 0.27
3PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic... 32 0.45
4PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane ... 32 0.59
5PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane ... 32 0.59
6PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane ... 31 1.0
7SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4 31 1.3
8SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4 31 1.3
9SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4 30 1.7
10PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... 30 2.3
11UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-reco... 30 2.9
12SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4 28 6.6
13TELT_MOUSE (O70548) Telethonin (Titin cap protein) 28 6.6

>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2.6) (OsPIP2.6)
          Length = 282

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -1

Query: 418 YHQYILRAAAIKALG 374
           YHQYILRAAAIKALG
Sbjct: 260 YHQYILRAAAIKALG 274



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>PIP1_ATRCA (P42767) Aquaporin PIP-type|
          Length = 282

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = -1

Query: 418 YHQYILRAAAIKALG 374
           YHQY+LRAAAIKALG
Sbjct: 260 YHQYVLRAAAIKALG 274



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>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)|
           (Salt stress-induced major intrinsic protein)
          Length = 280

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = -1

Query: 418 YHQYILRAAAIKALG 374
           YHQYILRA+AIKALG
Sbjct: 258 YHQYILRASAIKALG 272



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>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic|
           protein 2.4)
          Length = 291

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = -1

Query: 418 YHQYILRAAAIKALG 374
           YHQ+ILRAAAIKALG
Sbjct: 265 YHQFILRAAAIKALG 279



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>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic|
           protein 2a) (PIP2a) (OsPIP2.1)
          Length = 290

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -1

Query: 418 YHQYILRAAAIKALG 374
           YHQYILRA AIKALG
Sbjct: 270 YHQYILRAGAIKALG 284



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>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 3b) (PIP3b)
          Length = 278

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 418 YHQYILRAAAIKAL 377
           YHQYILRAAAIKAL
Sbjct: 256 YHQYILRAAAIKAL 269



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>SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4|
          Length = 742

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCH C+K L   + C GCS
Sbjct: 294 YCHHCLKQLLASIPCCGCS 312



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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -1

Query: 418 YHQYILRAAAIKALG 374
           YHQ++LRA AIKALG
Sbjct: 264 YHQFVLRAGAIKALG 278



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>UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-recognin (EC|
            6.-.-.-) (Ubiquitin-protein ligase E3-alpha)
          Length = 1927

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 368  PEQPEQLSTPANNLMQRWQYCSSCPSGAS*PHKRTGFVLAVLLLHRAHP 222
            P +P+   TP + L+      S  P+ A  PH  T F   V L + A P
Sbjct: 1560 PPRPKLAQTPGSPLLSAPSTSSFTPAPAQIPHSGTNFAFLVQLFNPAGP 1608



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>SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4|
          Length = 799

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCHRC+K     + C  CS
Sbjct: 295 YCHRCLKHTLATVPCGSCS 313



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>TELT_MOUSE (O70548) Telethonin (Titin cap protein)|
          Length = 167

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 205 QTLNEAGWARWRSSTANTKPVRLCG*LAPDGHEEQYCHR 321
           Q   EA WA W+  T +T+P   C     D    +  HR
Sbjct: 15  QERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHR 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,412,841
Number of Sequences: 219361
Number of extensions: 998441
Number of successful extensions: 2448
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2447
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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