ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Vol... 28 5.6
2TRI66_HUMAN (O15016) Tripartite motif protein 66 27 9.5
3PPCS_MOUSE (Q8VDG5) Phosphopantothenate--cysteine ligase (EC 6.3... 27 9.5

>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent|
           anion-selective channel protein) (VDAC)
          Length = 277

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 341 HLWHPTSYLILIGSSELNLHNRSSAVGLS*LLGH 240
           H W P S++ + G  +     +S+ VGLS +L H
Sbjct: 244 HEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLKH 277



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>TRI66_HUMAN (O15016) Tripartite motif protein 66|
          Length = 1214

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 241 CPNNQERPTAEDLLCKFSSEDPIKI 315
           CP +   P+ E+ LCK   E+PI +
Sbjct: 780 CPRDGADPSLENALCKVKLEEPINL 804



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>PPCS_MOUSE (Q8VDG5) Phosphopantothenate--cysteine ligase (EC 6.3.2.5)|
           (Phosphopantothenoylcysteine synthetase) (PPC
           synthetase)
          Length = 311

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 20  VLITIYGMKWPLQSKGISLVAQHPFGSRG*ANASTNLAS 136
           VLIT  G K PL+++ +  +     G RG A+A   LA+
Sbjct: 38  VLITSGGTKVPLEARAVRFLDNFSSGRRGAASAEVFLAA 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,545,779
Number of Sequences: 219361
Number of extensions: 924825
Number of successful extensions: 1730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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