>gb|AY104916.1| Zea mays PCO092703 mRNA sequence
          Length = 852

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 310 aagatcagatatgatgttggatgccatagatgtca 344
           ||||||||  ||||||||||||||||| |||||||
Sbjct: 597 aagatcagtgatgatgttggatgccatcgatgtca 563

>emb|AL157883.15| Human DNA sequence from clone RP11-360J12 on chromosome 9q21.12-21.32
              Contains an orthodenticle homolog 2 (Drosophila) (OTX2)
              pseudogene, complete sequence
          Length = 176870

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 55     acaaagcaaaggcatttcttt 75
              |||||||||||||||||||||
Sbjct: 131518 acaaagcaaaggcatttcttt 131498

>gb|BT024178.1| Zea mays clone EL01N0419D11 mRNA sequence
          Length = 1758

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 320  atgatgttggatgccatagatgtca 344
            ||||||||||||||||| |||||||
Sbjct: 1347 atgatgttggatgccatcgatgtca 1323

>gb|AY775882.1| Bubalus bubalis clone BBMS053 microsatellite sequence
          Length = 1091

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 163  tcctctttctttccttccct 182
            ||||||||||||||||||||
Sbjct: 990  tcctctttctttccttccct 1009

>gb|AC102444.8| Mus musculus chromosome 1, clone RP24-196I15, complete sequence
          Length = 144463

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    tcctctttctttccttccct 182
              ||||||||||||||||||||
Sbjct: 140288 tcctctttctttccttccct 140307

>gb|AC093483.6| Mus musculus chromosome 9, clone RP23-79K5, complete sequence
          Length = 262048

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    atgccatagatgtcagcttc 349
              ||||||||||||||||||||
Sbjct: 214615 atgccatagatgtcagcttc 214596

>gb|AC122398.2| Mus musculus BAC clone RP24-90M8 from chromosome 18, complete sequence
          Length = 215758

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     attacaaagcaaaggcattt 71
              ||||||||||||||||||||
Sbjct: 116048 attacaaagcaaaggcattt 116067

>gb|AC012645.7| Homo sapiens chromosome 16 clone RP11-455F5, complete sequence
          Length = 192943

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   ataaaatcctctttctttcc 176
             ||||||||||||||||||||
Sbjct: 99430 ataaaatcctctttctttcc 99411

>gb|AC135638.5| Mus musculus BAC clone RP23-330K10 from chromosome 18, complete
             sequence
          Length = 184588

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   ctctttctttccttccctac 184
             ||||||||||||||||||||
Sbjct: 61211 ctctttctttccttccctac 61192

>emb|CR376787.10| Zebrafish DNA sequence from clone DKEY-33C9 in linkage group 7,
           complete sequence
          Length = 217684

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 attcgcaataaaatcctctt 169
           ||||||||||||||||||||
Sbjct: 772 attcgcaataaaatcctctt 753

>gb|AC146274.2| Pan troglodytes BAC clone RP43-29I24 from 7, complete sequence
          Length = 51473

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   tcctctttctttccttccct 182
             ||||||||||||||||||||
Sbjct: 20907 tcctctttctttccttccct 20926

>gb|AC010099.10| Homo sapiens BAC clone RP11-420H19 from 7, complete sequence
          Length = 154836

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    agcattcgcaataaaatcct 166
              ||||||||||||||||||||
Sbjct: 125426 agcattcgcaataaaatcct 125445

>gb|AC004942.1| Homo sapiens PAC clone RP5-981B16 from 7, complete sequence
          Length = 76079

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   tcctctttctttccttccct 182
             ||||||||||||||||||||
Sbjct: 26204 tcctctttctttccttccct 26223

>emb|AL163284.2|HS21C084 Homo sapiens chromosome 21 segment HS21C084
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   agtaaattagttaagcattc 153
             ||||||||||||||||||||
Sbjct: 75021 agtaaattagttaagcattc 75002

>gb|AC163899.3| Mus musculus chromosome 1, clone RP24-383F13, complete sequence
          Length = 227890

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   tcctctttctttccttccct 182
             ||||||||||||||||||||
Sbjct: 34322 tcctctttctttccttccct 34341

>gb|AC149493.7| Medicago truncatula clone mth2-116k17, complete sequence
          Length = 105229

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    caaagcaaaggcatttcttt 75
             ||||||||||||||||||||
Sbjct: 90519 caaagcaaaggcatttcttt 90500

>emb|Z94161.5|HSN102C10 Human DNA sequence from clone LL22NC03-102C10 on chromosome 22q13
             Contains the first exon of the PPARA gene for peroxisome
             proliferative activated receptor alpha, an EST, GSSs and a
             putative CpG island, complete sequence
          Length = 44134

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   aataaaatcctctttctttc 175
             ||||||||||||||||||||
Sbjct: 17154 aataaaatcctctttctttc 17135

>gb|AC157909.5| Mus musculus chromosome 18, clone RP24-362I13, complete sequence
          Length = 140042

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   tcctctttctttccttccct 182
             ||||||||||||||||||||
Sbjct: 98740 tcctctttctttccttccct 98721

>emb|AL954237.1| Pan troglodytes chromosome 22 clone PTB-219D01 map 22q22.2-q22.3,
             complete sequence
          Length = 82980

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   agtaaattagttaagcattc 153
             ||||||||||||||||||||
Sbjct: 61498 agtaaattagttaagcattc 61479

>gb|AC102131.20| Mus musculus chromosome 18, clone RP23-223O13, complete sequence
          Length = 200227

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    tcctctttctttccttccct 182
              ||||||||||||||||||||
Sbjct: 199429 tcctctttctttccttccct 199410

>gb|BC089212.1| Rattus norvegicus similar to cDNA sequence BC005537, mRNA (cDNA
           clone MGC:105535 IMAGE:7302835), complete cds
          Length = 2165

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 163 tcctctttctttccttccct 182
           ||||||||||||||||||||
Sbjct: 24  tcctctttctttccttccct 43

>gb|BC085940.1| Rattus norvegicus similar to cDNA sequence BC005537, mRNA (cDNA
           clone MGC:95046 IMAGE:7123624), complete cds
          Length = 2214

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 163 tcctctttctttccttccct 182
           ||||||||||||||||||||
Sbjct: 226 tcctctttctttccttccct 245

>ref|NM_001017510.1| Rattus norvegicus similar to cDNA sequence BC005537 (LOC498750),
           mRNA
          Length = 2214

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 163 tcctctttctttccttccct 182
           ||||||||||||||||||||
Sbjct: 226 tcctctttctttccttccct 245

>gb|AC152505.2| Pan troglodytes BAC clone RP43-113N22 from chromosome 7, complete
              sequence
          Length = 219580

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    agcattcgcaataaaatcct 166
              ||||||||||||||||||||
Sbjct: 105972 agcattcgcaataaaatcct 105991

>gb|AC017053.8| Homo sapiens BAC clone RP11-339D8 from 2, complete sequence
          Length = 181952

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   tcctctttctttccttccct 182
             ||||||||||||||||||||
Sbjct: 11739 tcctctttctttccttccct 11720

>gb|AY206718.1| Homo sapiens peroxisome proliferative activated receptor, alpha
            (PPARA) gene, complete cds
          Length = 86215

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 156  aataaaatcctctttctttc 175
            ||||||||||||||||||||
Sbjct: 6752 aataaaatcctctttctttc 6771

>gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complete sequence
          Length = 196682

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    atgccatagatgtcagcttc 349
              ||||||||||||||||||||
Sbjct: 191656 atgccatagatgtcagcttc 191675

>dbj|AK114358.1| Ciona intestinalis cDNA, clone:cicl058h19, full insert sequence
          Length = 1401

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  ttctttggtagcacagcacc 89
           ||||||||||||||||||||
Sbjct: 971 ttctttggtagcacagcacc 990

>emb|AL773569.1|HS247E2 Homo sapiens chromosome 21 from PAC RP1-247E2 map 21q22.2,D21S349-MX1,
             complete sequence
          Length = 153402

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   agtaaattagttaagcattc 153
             ||||||||||||||||||||
Sbjct: 46656 agtaaattagttaagcattc 46637

>emb|AL929100.11| Mouse DNA sequence from clone RP23-436G18 on chromosome 2, complete
              sequence
          Length = 196372

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    tcctctttctttccttccct 182
              ||||||||||||||||||||
Sbjct: 187419 tcctctttctttccttccct 187400


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,329,114
Number of Sequences: 3902068
Number of extensions: 3329114
Number of successful extensions: 84913
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84867
Number of HSP's gapped (non-prelim): 46
length of query: 351
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 329
effective length of database: 17,147,199,772
effective search space: 5641428724988
effective search space used: 5641428724988
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)