ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXOC1_DROME (Q9VVG4) Probable exocyst complex component 1 (Exocy... 29 2.5
2COX1_LEITA (P14544) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ... 28 4.3
3NLTP_RABIT (O62742) Nonspecific lipid-transfer protein, mitochon... 28 5.6

>EXOC1_DROME (Q9VVG4) Probable exocyst complex component 1 (Exocyst complex|
           component Sec3)
          Length = 889

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 176 SVYTAEK*RGKQSAGPCLLASAPPFPSLVAPLLLCSETRQ-EQKQENKKM*SMMRW*SG 3
           SV T  K + K+    C++ +APP P +   L+  SE R+ E K++       ++W  G
Sbjct: 28  SVVTVVKKKDKKPCYLCVVTTAPPVPVVTLCLIKQSEQREGEYKRKRSWQLDEIKWVDG 86



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>COX1_LEITA (P14544) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 549

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 13  HLIIDYIFLFSCFC 54
           H+++DY+FL  CFC
Sbjct: 519 HIVLDYLFLILCFC 532



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>NLTP_RABIT (O62742) Nonspecific lipid-transfer protein, mitochondrial|
           precursor (EC 2.3.1.176) (Propanoyl-CoA
           C-acyltransferase) (NSL-TP) (Sterol carrier protein 2)
           (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi)
           (SCPX)
          Length = 547

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 22  IDYIFLFSCFCS*RVSEHRRRGATREGKGGALASK 126
           ID I L  CF +  +  +   G   EGKGGAL  +
Sbjct: 299 IDVIELHDCFSANELLTYEALGLCPEGKGGALVDR 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,283,532
Number of Sequences: 219361
Number of extensions: 352105
Number of successful extensions: 853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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