ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet95h09 |
|---|---|
| Clone Library Name | barley_pub |
>XTH32_ARATH (Q9SJL9) Probable xyloglucan endotransglucosylase/hydrolase protein| 32 precursor (EC 2.4.1.207) (At-XTH32) (XTH-32) Length = 299 Score = 36.6 bits (83), Expect = 0.015 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Frame = -1 Query: 391 ASCRPVPAGP--GGGLXXXXXXXXXXXXQRAMVYYYCQDGSKDRSNYPEC 248 A C P+ A P GGL +MVY YC+D +D S PEC Sbjct: 248 ARCYPLSASPYRSGGLTRQQHQAMRWVQTHSMVYNYCKDYKRDHSLTPEC 297
>Y1393_RHILO (Q98KN6) Hypothetical protein mll1393| Length = 302 Score = 33.5 bits (75), Expect = 0.12 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Frame = +3 Query: 12 FITVRVTNSNNLGRVRLSSLCWGLIAPH--TYPIESPY-QCNHTIHRIPAVPYRSTYVRT 182 ++T+ V N GR+RL + W +AP + SPY C T++ A R T Sbjct: 167 YVTIPVANLEAAGRIRLDNQAWSELAPRKSEWAFASPYVYCRETVNHESAFHVRMIVPGT 226 Query: 183 P 185 P Sbjct: 227 P 227
>XTH31_ARATH (P93046) Probable xyloglucan endotransglucosylase/hydrolase protein| 31 precursor (EC 2.4.1.207) (At-XTH31) (XTH-31) (AtXTR8) Length = 293 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = -1 Query: 391 ASCRPVPAGP--GGGLXXXXXXXXXXXXQRAMVYYYCQDGSKDRSNYPEC 248 +SCRP P GL + +VY YC D +D + PEC Sbjct: 244 SSCRPPSPAPMRNRGLSRQQMAALTWAQRNFLVYNYCHDPKRDHTQTPEC 293
>1C08_HUMAN (P30505) HLA class I histocompatibility antigen, Cw-8 alpha chain| precursor (MHC class I antigen Cw*8) Length = 366 Score = 31.6 bits (70), Expect = 0.47 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +2 Query: 143 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 298 YTC E + + G QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWGPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVM 332
>1C05_HUMAN (Q9TNN7) HLA class I histocompatibility antigen, Cw-5 alpha chain| precursor (MHC class I antigen Cw*5) Length = 366 Score = 31.6 bits (70), Expect = 0.47 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +2 Query: 143 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 298 YTC E + + G QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWGPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVM 332
>UL43_HHV11 (P10227) Membrane protein UL43| Length = 434 Score = 30.8 bits (68), Expect = 0.80 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = +2 Query: 203 EGQPPLPL--ARARSFLALWVVGAVLGSILAVVVDHGPLLRPAHG 331 +G+P L A AR F+ +W+ A LG +VV+ GP A G Sbjct: 38 DGRPHLACVGALARGFMHIWLQAATLGFAGSVVMSRGPYANAASG 82
>1C18_HUMAN (Q29865) HLA class I histocompatibility antigen, Cw-18 alpha chain| precursor (MHC class I antigen Cw*18) Length = 366 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +2 Query: 143 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 298 YTC E + + QP +P+ + LA+ VV AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWKPSSQPTIPIVGIVAGLAVLVVLAVLGAVVAVVM 332
>MTR1_RHOSH (P14751) Modification methylase RsrI (EC 2.1.1.72)| (Adenine-specific methyltransferase RsrI) (M.RsrI) Length = 319 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/27 (55%), Positives = 18/27 (66%) Frame = -2 Query: 159 TARQVYDV*CDCIDTVIRSGMYVVQLI 79 T R VYDV CDC+DT+ + VQLI Sbjct: 37 TTRHVYDV-CDCLDTLAKLPDDSVQLI 62
>1C15_HUMAN (Q07000) HLA class I histocompatibility antigen, Cw-15 alpha chain| precursor (MHC class I antigen Cw*15) Length = 366 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 143 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 298 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVM 332
>1C12_HUMAN (P30508) HLA class I histocompatibility antigen, Cw-12 alpha chain| precursor (MHC class I antigen Cw*12) Length = 366 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 143 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 298 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVM 332
>1C06_HUMAN (Q29963) HLA class I histocompatibility antigen, Cw-6 alpha chain| precursor (MHC class I antigen Cw*6) Length = 366 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 143 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 298 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVM 332
>MURA2_LACPL (Q88Z54) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 (EC| 2.5.1.7) (Enoylpyruvate transferase 2) (UDP-N-acetylglucosamine enolpyruvyl transferase 2) (EPT 2) Length = 426 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/38 (50%), Positives = 21/38 (55%) Frame = +2 Query: 194 TGTEGQPPLPLARARSFLALWVVGAVLGSILAVVVDHG 307 TGTEG L AR FL + VGA + ILA V HG Sbjct: 148 TGTEG-----LHGARIFLDVVSVGATINIILAAVKAHG 180
>HSP6C_DROME (P22979) Heat shock protein 67B3 (Heat shock 18 kDa protein)| Length = 169 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/61 (24%), Positives = 29/61 (47%) Frame = +1 Query: 55 YASAAFAGD*LHHIHTRSNHRINAITLYIVYLPCRIGVHTYVRLNHHWNGRAATIAAGSS 234 Y F +H+R +H ++ TL ++ R+G H + + + NG A ++ G + Sbjct: 18 YGHDMFPNRMYRRLHSRQHHDLDLHTLGLI---ARMGAHAHHLVANKRNGELAALSRGGA 74 Query: 235 S 237 S Sbjct: 75 S 75
>YIN0_YEAST (P40467) Putative 108.8 kDa transcriptional regulatory protein in| FKH1-STH1 intergenic region Length = 964 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/57 (29%), Positives = 27/57 (47%) Frame = +2 Query: 53 STPQQPLLGINCTTYIPDRITVSMQSHYTSYTCRAV*EYIRTYASTITGTEGQPPLP 223 S+P QP+L N PD +M+S S + + + TY++ G E + LP Sbjct: 185 SSPIQPVLSSNSKNSTPDEFLPNMKSDSNSASSNREQDSVDTYSNIPVGREIKIILP 241
>1C16_HUMAN (Q29960) HLA class I histocompatibility antigen, Cw-16 alpha chain| precursor (MHC class I antigen Cw*16) Length = 366 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 143 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 298 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVM 332
>1C14_HUMAN (P30510) HLA class I histocompatibility antigen, Cw-14 alpha chain| precursor (MHC class I antigen Cw*14) Length = 366 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 143 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 298 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVM 332
>1C03_HUMAN (P04222) HLA class I histocompatibility antigen, Cw-3 alpha chain| precursor (MHC class I antigen Cw*3) Length = 366 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 143 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 298 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVM 332
>1C02_HUMAN (P30501) HLA class I histocompatibility antigen, Cw-2 alpha chain| precursor (MHC class I antigen Cw*2) Length = 366 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 143 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 298 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVM 332
>1C01_HUMAN (P30499) HLA class I histocompatibility antigen, Cw-1 alpha chain| precursor (MHC class I antigen Cw*1) Length = 366 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 143 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 298 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVM 332
>MUTS_NITWN (Q3SVD4) DNA mismatch repair protein mutS| Length = 888 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/47 (38%), Positives = 25/47 (53%) Frame = +2 Query: 173 RTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVVDHGPL 313 R+Y + G PP +ARA+S LA + GS + V+VD PL Sbjct: 793 RSYGIQVARLAGLPPSVIARAKSVLAK-LEAQDRGSTVRVLVDDLPL 838
>VE2_HPV14 (P36783) Regulatory protein E2| Length = 483 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -2 Query: 297 TTTARMDPRTAPTTQSARKLRARASGNGG 211 TTT R R + +T S R RAR G GG Sbjct: 313 TTTTRGRGRGSSSTSSKRSQRARGRGRGG 341
>PST1_SCHPO (Q09750) Paired amphipathic helix protein pst1 (SIN3 homolog 1)| Length = 1522 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/62 (30%), Positives = 27/62 (43%) Frame = +2 Query: 176 TYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVVDHGPLLRPAHGGALLRAQP 355 T A T +G PP PL + S + G +L + V H + PA+G A + P Sbjct: 48 TQAPPHTNPQGPPPFPLFNSISPVYDPATGRLLYRNVNTQVSHTAIPNPANGYAAVYGGP 107 Query: 356 AS 361 S Sbjct: 108 PS 109
>ZN287_HUMAN (Q9HBT7) Zinc finger protein 287| Length = 754 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +3 Query: 30 TNSNNLGRVRLSSLCWGLIAPHTYPIESPYQCN 128 T+ N GR + + +G++ P E PY+CN Sbjct: 332 TSVYNEGRATFNHVSYGIVHRKILPGEKPYKCN 364
>TILS_MYCLE (O69538) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 323 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +2 Query: 170 IRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVVDHG 307 + +A T + Q + L+ LAL V A L S A +VDHG Sbjct: 14 VEEFAGTYCDIDDQWCVALSGGSDSLALTAVAAQLRSTTAFIVDHG 59
>1C04_HUMAN (P30504) HLA class I histocompatibility antigen, Cw-4 alpha chain| precursor (MHC class I antigen Cw*4) Length = 366 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 143 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 298 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWKPSSQPTIPIVGIVAGLAVLAVLAVLGAMVAVVM 332 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,025,782 Number of Sequences: 219361 Number of extensions: 1118412 Number of successful extensions: 3423 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3285 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3422 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
