ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468005.1| Oryza sativa (japonica cultivar-group), mRNA 84 5e-13
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
3dbj|AP004080.3| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
4dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
5dbj|AK101234.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
6dbj|AK066977.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
7gb|BT018613.1| Zea mays clone EL01N0501C04.d mRNA sequence 80 7e-12
8dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.39
9ref|NM_197250.1| Oryza sativa (japonica cultivar-group) hypothet... 42 1.5
10gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
11dbj|AK042627.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 42 1.5
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
13dbj|AK062588.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
14emb|AL935201.10| Zebrafish DNA sequence from clone CH211-251C24 ... 42 1.5
15gb|AC102262.9| Mus musculus chromosome 15, clone RP24-216B4, com... 42 1.5
16gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
17emb|AL161439.15| Human DNA sequence from clone RP11-505E17 on ch... 42 1.5
18dbj|AP006144.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 1.5
19gb|AC160528.9| Mus musculus chromosome 15, clone RP23-310L8, com... 42 1.5
20ref|XM_638180.1| Dictyostelium discoideum hypothetical protein (... 40 6.1
21ref|NM_189327.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
22ref|XM_473085.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
23gb|AC150561.4| Bos taurus BAC CH240-184G17 (Children's Hospital... 40 6.1
24ref|XM_957241.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.1
25ref|XM_326446.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.1
26ref|NM_013700.1| Mus musculus ubiquitin specific peptidase 5 (is... 40 6.1
27ref|XM_451808.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B06094g ... 40 6.1
28gb|AC137901.7| Mus musculus chromosome 6, clone RP23-81E17, comp... 40 6.1
29gb|BC066993.1| Mus musculus ubiquitin specific peptidase 5 (isop... 40 6.1
30gb|AC116979.3| Dictyostelium discoideum chromosome 2 map 6445720... 40 6.1
31gb|AC166542.2| Nectria haematococca clone JGIAYWI-5G16, complete... 40 6.1
32gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.1
33emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.1
34emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4,... 40 6.1
35gb|AF481922.1| Dictyostelium discoideum cAMP/cGMP-stimulated cAM... 40 6.1
36dbj|AK154008.1| Mus musculus 2 days neonate thymus thymic cells ... 40 6.1
37gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.1
38gb|AY047364.1| Dictyostelium discoideum cAMP phosphodiesterase (... 40 6.1
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
40dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
41dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
42gb|AC098872.5| Homo sapiens BAC clone RP11-773P9 from 2, complet... 40 6.1
43dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
44dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
45gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, ... 40 6.1
46gb|AC162305.5| Mus musculus BAC clone RP23-470G3 from chromosome... 40 6.1
47gb|AC002397.1|AC002397 Mouse chromosome 6 BAC-284H12 (Research G... 40 6.1
48gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
49emb|AL713945.5|CNS07YPO Oryza sativa chromosome 12, . BAC OJ1727... 40 6.1
50emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.1
51emb|AL731891.2|CNS08C8V Oryza sativa chromosome 12, . BAC OJ1374... 40 6.1
52gb|AC142254.4| Mus musculus BAC clone RP24-545G7 from 6, complet... 40 6.1
53gb|AC145550.3| Mus musculus BAC clone RP23-50A18 from 16, comple... 40 6.1
54emb|AJ812002.1| Aspergillus niger gene for putative epsin N-term... 40 6.1 
>ref|XM_468005.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1488

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 71/78 (91%), Gaps = 2/78 (2%)
 Strand = Plus / Minus

                                                                        
Query: 39   aggttaagacaaactactttggtacaatgatcatgaacaagtaaattttggttggaattg 98
            |||||||||||| ||||||||||||| ||||||||||||||||||||  ||||| |||||
Sbjct: 1324 aggttaagacaa-ctactttggtaca-tgatcatgaacaagtaaattgaggttgaaattg 1267

                              
Query: 99   atgaatgccaggcaccag 116
            |||||||| | |||||||
Sbjct: 1266 atgaatgctatgcaccag 1249



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 190  cggttcctacggcgccgccggcgacgcctgtctgatctaagcatacccgcgcctccccct 249
            ||||| |||||||| ||||| || ||||| |||| ||||| |||||| | || ||| |||
Sbjct: 1172 cggtttctacggcggcgccgacgccgcctctctggtctaaccataccggtgcttccgcct 1113

                                               
Query: 250  ccggccagagccatgtcatcctcgtcgtcgccttc 284
            ||||||| | |||  |||||||| |||||||||||
Sbjct: 1112 ccggccataaccaaatcatcctcatcgtcgccttc 1078
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 71/78 (91%), Gaps = 2/78 (2%)
 Strand = Plus / Minus

                                                                            
Query: 39       aggttaagacaaactactttggtacaatgatcatgaacaagtaaattttggttggaattg 98
                |||||||||||| ||||||||||||| ||||||||||||||||||||  ||||| |||||
Sbjct: 32517416 aggttaagacaa-ctactttggtaca-tgatcatgaacaagtaaattgaggttgaaattg 32517359

                                  
Query: 99       atgaatgccaggcaccag 116
                |||||||| | |||||||
Sbjct: 32517358 atgaatgctatgcaccag 32517341



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                            
Query: 190      cggttcctacggcgccgccggcgacgcctgtctgatctaagcatacccgcgcctccccct 249
                ||||| |||||||| ||||| || ||||| |||| ||||| |||||| | || ||| |||
Sbjct: 32517264 cggtttctacggcggcgccgacgccgcctctctggtctaaccataccggtgcttccgcct 32517205

                                                   
Query: 250      ccggccagagccatgtcatcctcgtcgtcgccttc 284
                ||||||| | |||  |||||||| |||||||||||
Sbjct: 32517204 ccggccataaccaaatcatcctcatcgtcgccttc 32517170
to top
>dbj|AP004080.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1079_F11
          Length = 122402

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 71/78 (91%), Gaps = 2/78 (2%)
 Strand = Plus / Minus

                                                                          
Query: 39     aggttaagacaaactactttggtacaatgatcatgaacaagtaaattttggttggaattg 98
              |||||||||||| ||||||||||||| ||||||||||||||||||||  ||||| |||||
Sbjct: 120809 aggttaagacaa-ctactttggtaca-tgatcatgaacaagtaaattgaggttgaaattg 120752

                                
Query: 99     atgaatgccaggcaccag 116
              |||||||| | |||||||
Sbjct: 120751 atgaatgctatgcaccag 120734



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                          
Query: 190    cggttcctacggcgccgccggcgacgcctgtctgatctaagcatacccgcgcctccccct 249
              ||||| |||||||| ||||| || ||||| |||| ||||| |||||| | || ||| |||
Sbjct: 120657 cggtttctacggcggcgccgacgccgcctctctggtctaaccataccggtgcttccgcct 120598

                                                 
Query: 250    ccggccagagccatgtcatcctcgtcgtcgccttc 284
              ||||||| | |||  |||||||| |||||||||||
Sbjct: 120597 ccggccataaccaaatcatcctcatcgtcgccttc 120563
to top
>dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1353_F08
          Length = 101988

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 71/78 (91%), Gaps = 2/78 (2%)
 Strand = Plus / Minus

                                                                         
Query: 39    aggttaagacaaactactttggtacaatgatcatgaacaagtaaattttggttggaattg 98
             |||||||||||| ||||||||||||| ||||||||||||||||||||  ||||| |||||
Sbjct: 14389 aggttaagacaa-ctactttggtaca-tgatcatgaacaagtaaattgaggttgaaattg 14332

                               
Query: 99    atgaatgccaggcaccag 116
             |||||||| | |||||||
Sbjct: 14331 atgaatgctatgcaccag 14314



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                         
Query: 190   cggttcctacggcgccgccggcgacgcctgtctgatctaagcatacccgcgcctccccct 249
             ||||| |||||||| ||||| || ||||| |||| ||||| |||||| | || ||| |||
Sbjct: 14237 cggtttctacggcggcgccgacgccgcctctctggtctaaccataccggtgcttccgcct 14178

                                                
Query: 250   ccggccagagccatgtcatcctcgtcgtcgccttc 284
             ||||||| | |||  |||||||| |||||||||||
Sbjct: 14177 ccggccataaccaaatcatcctcatcgtcgccttc 14143
to top
>dbj|AK101234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031J23, full
            insert sequence
          Length = 3859

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 71/78 (91%), Gaps = 2/78 (2%)
 Strand = Plus / Minus

                                                                        
Query: 39   aggttaagacaaactactttggtacaatgatcatgaacaagtaaattttggttggaattg 98
            |||||||||||| ||||||||||||| ||||||||||||||||||||  ||||| |||||
Sbjct: 3667 aggttaagacaa-ctactttggtaca-tgatcatgaacaagtaaattgaggttgaaattg 3610

                              
Query: 99   atgaatgccaggcaccag 116
            |||||||| | |||||||
Sbjct: 3609 atgaatgctatgcaccag 3592



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 190  cggttcctacggcgccgccggcgacgcctgtctgatctaagcatacccgcgcctccccct 249
            ||||| |||||||| ||||| || ||||| |||| ||||| |||||| | || ||| |||
Sbjct: 3515 cggtttctacggcggcgccgacgccgcctctctggtctaaccataccggtgcttccgcct 3456

                                               
Query: 250  ccggccagagccatgtcatcctcgtcgtcgccttc 284
            ||||||| | |||  |||||||| |||||||||||
Sbjct: 3455 ccggccataaccaaatcatcctcatcgtcgccttc 3421
to top
>dbj|AK066977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089K11, full
            insert sequence
          Length = 1488

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 71/78 (91%), Gaps = 2/78 (2%)
 Strand = Plus / Minus

                                                                        
Query: 39   aggttaagacaaactactttggtacaatgatcatgaacaagtaaattttggttggaattg 98
            |||||||||||| ||||||||||||| ||||||||||||||||||||  ||||| |||||
Sbjct: 1324 aggttaagacaa-ctactttggtaca-tgatcatgaacaagtaaattgaggttgaaattg 1267

                              
Query: 99   atgaatgccaggcaccag 116
            |||||||| | |||||||
Sbjct: 1266 atgaatgctatgcaccag 1249



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 190  cggttcctacggcgccgccggcgacgcctgtctgatctaagcatacccgcgcctccccct 249
            ||||| |||||||| ||||| || ||||| |||| ||||| |||||| | || ||| |||
Sbjct: 1172 cggtttctacggcggcgccgacgccgcctctctggtctaaccataccggtgcttccgcct 1113

                                               
Query: 250  ccggccagagccatgtcatcctcgtcgtcgccttc 284
            ||||||| | |||  |||||||| |||||||||||
Sbjct: 1112 ccggccataaccaaatcatcctcatcgtcgccttc 1078
to top
>gb|BT018613.1| Zea mays clone EL01N0501C04.d mRNA sequence
          Length = 1457

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 81/92 (88%), Gaps = 2/92 (2%)
 Strand = Plus / Minus

                                                                        
Query: 29   caatgaggtgaggttaagacaaactactttggtacaatgatcatgaacaagtaaattttg 88
            ||||||| ||| ||||||| || |||| |||||||| ||||||||| ||||||||||  |
Sbjct: 1360 caatgagctgatgttaagataa-ctaccttggtaca-tgatcatgatcaagtaaattgag 1303

                                            
Query: 89   gttggaattgatgaatgccaggcaccagggaa 120
            |  |||||||||||||||||||||||||||||
Sbjct: 1302 gcaggaattgatgaatgccaggcaccagggaa 1271



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 297  gtatggagtggttccattggcaccac 322
            |||||| |||||||||||||||||||
Sbjct: 1081 gtatggtgtggttccattggcaccac 1056
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 264     gtcatcctcgtcgtcgccttct 285
               ||||||||||||||||||||||
Sbjct: 4552602 gtcatcctcgtcgtcgccttct 4552623
to top
>ref|NM_197250.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0062C05.24), mRNA
          Length = 1404

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 199 cggcgccgccggcgacgcctg 219
           |||||||||||||||||||||
Sbjct: 892 cggcgccgccggcgacgcctg 872
to top
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05
              map S21174S, complete sequence
          Length = 178867

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 199    cggcgccgccggcgacgcctg 219
              |||||||||||||||||||||
Sbjct: 126137 cggcgccgccggcgacgcctg 126117
to top
>dbj|AK042627.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730011L11 product:P300
            TRANSCRIPTION COACTIVATOR (FRAGMENT) homolog [Mus sp],
            full insert sequence
          Length = 3238

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 2    tgaaaatgatacatggttgat 22
            |||||||||||||||||||||
Sbjct: 2554 tgaaaatgatacatggttgat 2574
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 199      cggcgccgccggcgacgcctg 219
                |||||||||||||||||||||
Sbjct: 18828401 cggcgccgccggcgacgcctg 18828381
to top
>dbj|AK062588.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-G05, full
           insert sequence
          Length = 1607

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 199 cggcgccgccggcgacgcctg 219
           |||||||||||||||||||||
Sbjct: 954 cggcgccgccggcgacgcctg 934
to top
>emb|AL935201.10| Zebrafish DNA sequence from clone CH211-251C24 in linkage group 24,
              complete sequence
          Length = 143327

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 132    ggtgctctggtgacaaagtcc 152
              |||||||||||||||||||||
Sbjct: 135886 ggtgctctggtgacaaagtcc 135866
to top
>gb|AC102262.9| Mus musculus chromosome 15, clone RP24-216B4, complete sequence
          Length = 191626

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     tgaaaatgatacatggttgat 22
             |||||||||||||||||||||
Sbjct: 85516 tgaaaatgatacatggttgat 85536
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 199      cggcgccgccggcgacgcctg 219
                |||||||||||||||||||||
Sbjct: 18839655 cggcgccgccggcgacgcctg 18839635
to top
>emb|AL161439.15| Human DNA sequence from clone RP11-505E17 on chromosome 6, complete
              sequence
          Length = 156527

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 65     atgatcatgaacaagtaaatt 85
              |||||||||||||||||||||
Sbjct: 144479 atgatcatgaacaagtaaatt 144459
to top
>dbj|AP006144.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT23P21, TM0261,
            complete sequence
          Length = 121882

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 310  ccattggcaccaccaccgcta 330
            |||||||||||||||||||||
Sbjct: 4597 ccattggcaccaccaccgcta 4577
to top
>gb|AC160528.9| Mus musculus chromosome 15, clone RP23-310L8, complete sequence
          Length = 174502

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      tgaaaatgatacatggttgat 22
              |||||||||||||||||||||
Sbjct: 174158 tgaaaatgatacatggttgat 174178
to top
>ref|XM_638180.1| Dictyostelium discoideum hypothetical protein (DDB0185220), partial
            mRNA
          Length = 3291

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   aatgatcatgaacaagtaaa 83
            ||||||||||||||||||||
Sbjct: 1498 aatgatcatgaacaagtaaa 1517
to top
>ref|NM_189327.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2355

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  acggcgccgccggcgacgcc 217
            ||||||||||||||||||||
Sbjct: 1463 acggcgccgccggcgacgcc 1482
to top
>ref|XM_473085.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1512

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 194 tcctacggcgccgccggcgacgcc 217
           |||||||||||||||| |||||||
Sbjct: 208 tcctacggcgccgccgccgacgcc 231
to top
>gb|AC150561.4| Bos taurus  BAC CH240-184G17 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 227834

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 417    catgaatattatcaaccttc 436
              ||||||||||||||||||||
Sbjct: 210479 catgaatattatcaaccttc 210460
to top
>ref|XM_957241.1| Neurospora crassa OR74A hypothetical protein (NCU06592.1) partial
            mRNA
          Length = 1539

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  gttccattggcaccaccacc 326
            ||||||||||||||||||||
Sbjct: 1349 gttccattggcaccaccacc 1330
to top
>ref|XM_326446.1| Neurospora crassa OR74A hypothetical protein (NCU06592.1) partial
            mRNA
          Length = 1539

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  gttccattggcaccaccacc 326
            ||||||||||||||||||||
Sbjct: 1349 gttccattggcaccaccacc 1330
to top
>ref|NM_013700.1| Mus musculus ubiquitin specific peptidase 5 (isopeptidase T)
           (Usp5), mRNA
          Length = 3176

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 254 ccagagccatgtcatcctcgtcgt 277
           ||||| ||||||||||||||||||
Sbjct: 857 ccagaaccatgtcatcctcgtcgt 834
to top
>ref|XM_451808.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B06094g predicted mRNA
          Length = 1083

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   tgaaaatgatacatggttga 21
           ||||||||||||||||||||
Sbjct: 571 tgaaaatgatacatggttga 552
to top
>gb|AC137901.7| Mus musculus chromosome 6, clone RP23-81E17, complete sequence
          Length = 158419

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 254    ccagagccatgtcatcctcgtcgt 277
              ||||| ||||||||||||||||||
Sbjct: 126653 ccagaaccatgtcatcctcgtcgt 126630
to top
>gb|BC066993.1| Mus musculus ubiquitin specific peptidase 5 (isopeptidase T), mRNA
           (cDNA clone MGC:91316 IMAGE:5689229), complete cds
          Length = 3172

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 254 ccagagccatgtcatcctcgtcgt 277
           ||||| ||||||||||||||||||
Sbjct: 835 ccagaaccatgtcatcctcgtcgt 812
to top
>gb|AC116979.3| Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4,
              complete sequence
          Length = 331039

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     aatgatcatgaacaagtaaa 83
              ||||||||||||||||||||
Sbjct: 235878 aatgatcatgaacaagtaaa 235897
to top
>gb|AC166542.2| Nectria haematococca clone JGIAYWI-5G16, complete sequence
          Length = 38385

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   tcatcctcgtcgtcgccttc 284
             ||||||||||||||||||||
Sbjct: 13577 tcatcctcgtcgtcgccttc 13558
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 258     agccatgtcatcctcgtcgtcgccttctgagg 289
               ||||||||||| |||||||||| | |||||||
Sbjct: 1826226 agccatgtcatgctcgtcgtcgtcatctgagg 1826195
to top
>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1320834

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      tgaaaatgatacatggttga 21
              ||||||||||||||||||||
Sbjct: 541920 tgaaaatgatacatggttga 541939
to top
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07,
             complete sequence
          Length = 130779

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 194   tcctacggcgccgccggcgacgcc 217
             |||||||||||||||| |||||||
Sbjct: 44985 tcctacggcgccgccgccgacgcc 45008
to top
>gb|AF481922.1| Dictyostelium discoideum cAMP/cGMP-stimulated cAMP/cGMP
            phosphodiesterase (gbpB) gene, complete cds
          Length = 3671

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   aatgatcatgaacaagtaaa 83
            ||||||||||||||||||||
Sbjct: 1749 aatgatcatgaacaagtaaa 1768
to top
>dbj|AK154008.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430021I10
           product:Ubiquitin carboxyl-terminal hydrolase 5 (EC
           3.1.2.15) (Ubiquitin thiolesterase 5)
           (Ubiquitin-specific processing protease 5)
           (Deubiquitinating enzyme 5) (Isopeptidase T) homolog
           [Mus musculus], full insert sequence
          Length = 3079

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 254 ccagagccatgtcatcctcgtcgt 277
           ||||| ||||||||||||||||||
Sbjct: 846 ccagaaccatgtcatcctcgtcgt 823
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 198     acggcgccgccggcgacgcc 217
               ||||||||||||||||||||
Sbjct: 3883508 acggcgccgccggcgacgcc 3883527
to top
>gb|AY047364.1| Dictyostelium discoideum cAMP phosphodiesterase (PdeE) gene, complete
            cds
          Length = 6540

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   aatgatcatgaacaagtaaa 83
            ||||||||||||||||||||
Sbjct: 3722 aatgatcatgaacaagtaaa 3741
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 194      tcctacggcgccgccggcgacgcc 217
                |||||||||||||||| |||||||
Sbjct: 25163318 tcctacggcgccgccgccgacgcc 25163341
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 144      acaaagtccctgccttcctc 163
                ||||||||||||||||||||
Sbjct: 26582939 acaaagtccctgccttcctc 26582920
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 198      acggcgccgccggcgacgcc 217
                ||||||||||||||||||||
Sbjct: 42187338 acggcgccgccggcgacgcc 42187357



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 198      acggcgccgccggcgacgcc 217
                ||||||||||||||||||||
Sbjct: 22088277 acggcgccgccggcgacgcc 22088258
to top
>gb|AC098872.5| Homo sapiens BAC clone RP11-773P9 from 2, complete sequence
          Length = 178804

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    gacaaagtccctgccttcct 162
              ||||||||||||||||||||
Sbjct: 131204 gacaaagtccctgccttcct 131185
to top
>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1294_F06
          Length = 121088

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   acggcgccgccggcgacgcc 217
             ||||||||||||||||||||
Sbjct: 60536 acggcgccgccggcgacgcc 60555
to top
>dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1151A10
          Length = 124344

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   acggcgccgccggcgacgcc 217
             ||||||||||||||||||||
Sbjct: 99790 acggcgccgccggcgacgcc 99771
to top
>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds;
             chivosazol biosynthetic gene cluster, complete sequence;
             and hypothetical protein gene, complete cds
          Length = 96547

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   acggcgccgccggcgacgcc 217
             ||||||||||||||||||||
Sbjct: 34607 acggcgccgccggcgacgcc 34626
to top
>gb|AC162305.5| Mus musculus BAC clone RP23-470G3 from chromosome 16, complete sequence
          Length = 208504

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     aacaagtaaattttggttgg 93
              ||||||||||||||||||||
Sbjct: 190278 aacaagtaaattttggttgg 190259
to top
>gb|AC002397.1|AC002397 Mouse chromosome 6 BAC-284H12 (Research Genetics mouse BAC library)
             complete sequence
          Length = 227538

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 254   ccagagccatgtcatcctcgtcgt 277
             ||||| ||||||||||||||||||
Sbjct: 73351 ccagaaccatgtcatcctcgtcgt 73328
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 144      acaaagtccctgccttcctc 163
                ||||||||||||||||||||
Sbjct: 26511108 acaaagtccctgccttcctc 26511089
to top
>emb|AL713945.5|CNS07YPO Oryza sativa chromosome 12, . BAC OJ1727_H11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 85710

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   acaaagtccctgccttcctc 163
             ||||||||||||||||||||
Sbjct: 52944 acaaagtccctgccttcctc 52925
to top
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14,
              complete sequence
          Length = 150187

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 194    tcctacggcgccgccggcgacgcc 217
              |||||||||||||||| |||||||
Sbjct: 110745 tcctacggcgccgccgccgacgcc 110768
to top
>emb|AL731891.2|CNS08C8V Oryza sativa chromosome 12, . BAC OJ1374_A04 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 101173

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  acaaagtccctgccttcctc 163
            ||||||||||||||||||||
Sbjct: 1809 acaaagtccctgccttcctc 1790
to top
>gb|AC142254.4| Mus musculus BAC clone RP24-545G7 from 6, complete sequence
          Length = 159818

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 254    ccagagccatgtcatcctcgtcgt 277
              ||||| ||||||||||||||||||
Sbjct: 110532 ccagaaccatgtcatcctcgtcgt 110509
to top
>gb|AC145550.3| Mus musculus BAC clone RP23-50A18 from 16, complete sequence
          Length = 146370

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    aacaagtaaattttggttgg 93
             ||||||||||||||||||||
Sbjct: 69684 aacaagtaaattttggttgg 69703
to top
>emb|AJ812002.1| Aspergillus niger gene for putative epsin N-terminal homology
           (ENTH) family protein, exons 1-6
          Length = 3170

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 403 gcaacttgacgcatcatgaatatt 426
           ||||||||||||||||||| ||||
Sbjct: 554 gcaacttgacgcatcatgattatt 577


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,802,616
Number of Sequences: 3902068
Number of extensions: 3802616
Number of successful extensions: 78721
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78067
Number of HSP's gapped (non-prelim): 648
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top