ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet95h04 |
|---|---|
| Clone Library Name | barley_pub |
>NETR_SAGLB (Q5G265) Neurotrypsin precursor (EC 3.4.21.-)| Length = 875 Score = 34.3 bits (77), Expect = 0.092 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +1 Query: 67 QQALRDILHHLHQPGPQPRAFHEPRPIPARARHEDHRRRPQPAMP 201 + L D LHH H+ P P + P +P RH R RP P +P Sbjct: 22 ESVLNDSLHHRHRHSPPPGLLY-PHYLPTEQRH--RRTRPPPPLP 63
>NCA3_YEAST (P46955) Protein NCA3, mitochondrial precursor| Length = 337 Score = 31.2 bits (69), Expect = 0.78 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 124 AFHEPRPIPARARHEDHRRRPQPAM 198 AF P P PA + HEDH + +PA+ Sbjct: 16 AFSAPAPAPADSHHEDHHKDEKPAV 40
>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)| (Obscurin-MLCK) (Obscurin-RhoGEF) Length = 7968 Score = 30.4 bits (67), Expect = 1.3 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = -3 Query: 183 SATMIL-VPCPSRDGSWFVEGTRLWPRLVEVVENVPESLLTPVTARSLGFEEPA 25 SAT + VP PS + +WF E TRLW +E E +T R++ ++ A Sbjct: 349 SATFLCEVPQPSTEAAWFKEETRLWASAKYGIEE--EGTERRLTVRNVSADDDA 400
>NETR_PANTR (Q5G271) Neurotrypsin precursor (EC 3.4.21.-)| Length = 875 Score = 30.4 bits (67), Expect = 1.3 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = +1 Query: 76 LRDILHHLHQPGPQPRAFHEPRPIPARARHEDHRRRPQPAMP 201 L D LHH H+ P P H P +P + R R RP P +P Sbjct: 25 LNDSLHHSHRHSPPPGP-HYPYYLPTQQR--PPRTRPPPPLP 63
>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4| precursor (LTBP-4) Length = 1666 Score = 30.0 bits (66), Expect = 1.7 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 106 PGPQPRAFHEPRPIPARARHEDHRRRPQP 192 P P+PR EPRP P + R RP+P Sbjct: 517 PQPEPRPRPEPRPRPESRPRPEPRPRPEP 545 Score = 28.1 bits (61), Expect = 6.6 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 103 QPGPQPRAFHEPRPIPARARHEDHRRRPQ 189 +P P+PR EPRP P + R RP+ Sbjct: 534 RPRPEPRPRPEPRPQPESQPRPESRPRPE 562
>FBXW8_HUMAN (Q8N3Y1) F-box/WD-repeat protein 8 (F-box and WD-40 domain protein| 8) (F-box only protein 29) Length = 598 Score = 30.0 bits (66), Expect = 1.7 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = -3 Query: 183 SATMILVPCPSRDGSWFVEGTRLWPRLVEVVENVPESLLTPVTARSLG 40 SA +++ P+ +G W + P+LV+ +E VPE+ PV + G Sbjct: 318 SAFDVVMLSPNEEGYWQIAAEFEVPKLVQYLEIVPETRRYPVAVAAAG 365
>TAMO_DROME (Q9W1A4) Protein tamozhennic| Length = 797 Score = 30.0 bits (66), Expect = 1.7 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 106 PGPQPRAFHEPRPIPARARHEDHRRRPQPAMP 201 P P P+ H P P+ +R DH + PQ +P Sbjct: 274 PAPPPQQPHLPGPLMTHSRSLDHYQEPQAHLP 305
>NETR_GORGO (Q5G270) Neurotrypsin precursor (EC 3.4.21.-)| Length = 876 Score = 29.6 bits (65), Expect = 2.3 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +1 Query: 76 LRDILHHLHQPGPQPRAFHEPRPIPARARHEDHRRRPQPAMP 201 L D LHH H+ P P + +P + R R RP P +P Sbjct: 25 LNDSLHHSHRHSPPPGPHYPSYYLPTQQR--PPRTRPPPPLP 64
>BHLH8_HUMAN (Q7RTS1) Class B basic helix-loop-helix protein 8 (bHLHB8) (Muscle,| intestine and stomach expression 1) (MIST-1) Length = 189 Score = 29.3 bits (64), Expect = 2.9 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = +1 Query: 97 LHQPGPQPRAFHEPRP--IPARARHEDHRRRPQPAMP 201 L PGP+P RP ARA E RRRP P+ P Sbjct: 30 LPNPGPEPAKGLRSRPARAAARAPGEGRRRRPGPSGP 66
>P85B_HUMAN (O00459) Phosphatidylinositol 3-kinase regulatory beta subunit| (PI3-kinase p85-beta subunit) (PtdIns-3-kinase p85-beta) Length = 728 Score = 28.9 bits (63), Expect = 3.9 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +1 Query: 97 LHQPGPQPRAFHEPRPIPARAR 162 L +PGP+PR PRP+PAR R Sbjct: 83 LARPGPRPRG---PRPLPARPR 101
>P85B_BOVIN (P23726) Phosphatidylinositol 3-kinase regulatory beta subunit| (PI3-kinase p85-beta subunit) (PtdIns-3-kinase p85-beta) Length = 724 Score = 28.9 bits (63), Expect = 3.9 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +1 Query: 97 LHQPGPQPRAFHEPRPIPARAR 162 L +PGP+PR PRP+PAR R Sbjct: 83 LARPGPRPRG---PRPLPARPR 101
>VATG_NEUCR (P78713) Vacuolar ATP synthase subunit G (EC 3.6.3.14) (V-ATPase G| subunit) (Vacuolar proton pump G subunit) (V-ATPase 13 kDa subunit) Length = 115 Score = 28.9 bits (63), Expect = 3.9 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +1 Query: 49 SGRHRRQQALRDILHHLHQPGPQPRAFH 132 +G R+Q ++D+LH + P P+ A H Sbjct: 88 AGNKNREQVIKDLLHAVFTPSPEAMAAH 115
>TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A protein (CAG| repeat protein 26) (Glycin-tryptophan protein of 182 kDa) (GW182 autoantigen) (GW1 protein) (EMSY interactor protein) Length = 1962 Score = 28.9 bits (63), Expect = 3.9 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +1 Query: 103 QPGPQPRAFHE-PRPIPARARHEDHRR 180 QP QP+A PR +P R RH++H++ Sbjct: 121 QPQQQPQALPRYPREVPPRFRHQEHKQ 147
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 28.5 bits (62), Expect = 5.0 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = +1 Query: 91 HHLHQPGPQPRAFHEPRPIPARARHEDHRRRPQPA 195 HH H P P + + RP RAR D R P+ Sbjct: 2217 HHHHPPPPDKDRYAQERPDHGRARARDQRWSRSPS 2251
>CBLN4_MOUSE (Q8BME9) Cerebellin-4 precursor (Cerebellin-like glycoprotein 1)| Length = 198 Score = 28.5 bits (62), Expect = 5.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +2 Query: 116 SLVPSTNHDPSRLGQGTRIIVAD 184 S V STNH+PS + TRII D Sbjct: 71 SAVRSTNHEPSEMSNKTRIIYFD 93
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = +1 Query: 91 HHLHQPGPQPRAFHEPRPIPARARHEDHRRRPQP 192 HHLH Q + P P + +H H PQP Sbjct: 117 HHLHSHPHQHQTLPPHHPYPHQHQHPAHHPHPQP 150
>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 4) (Brain calcium channel I) (BI) (RAT brain class A) (RBA-I) Length = 2212 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +1 Query: 91 HHLHQPGPQPRAFHEPRPIPARARHEDHRRRPQPA 195 HH H P P + + RP RAR + R P+ Sbjct: 2168 HHHHPPAPDRERYAQERPDTGRARAREQRWSRSPS 2202
>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) Length = 1692 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +1 Query: 103 QPGPQPRAFHEPRPIPARARHEDHRRRPQPAMP 201 QP PQP+ +P+P P + +PQP P Sbjct: 988 QPQPQPQPQPQPQPQPQSQSQPQPQPQPQPQRP 1020
>CBLN4_HUMAN (Q9NTU7) Cerebellin-4 precursor (Cerebellin-like glycoprotein 1)| Length = 201 Score = 28.5 bits (62), Expect = 5.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +2 Query: 116 SLVPSTNHDPSRLGQGTRIIVAD 184 S V STNH+PS + TRII D Sbjct: 74 SAVRSTNHEPSEMSNKTRIIYFD 96
>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)| Length = 3164 Score = 28.1 bits (61), Expect = 6.6 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +1 Query: 40 P*TSGRHRRQQALRDILHHLHQPGPQPRAFHEPRPIPARARHEDHRRRPQP 192 P TS R R + + QP PQP+ +P+P P + +PQP Sbjct: 2893 PTTSARPRGHLTVSRLSAPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQP 2943
>WAPL_DROME (Q9W517) Protein wings apart-like (Protein parallel sister| chromatids) Length = 1741 Score = 28.1 bits (61), Expect = 6.6 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = +1 Query: 52 GRHRRQQALRDILHHLHQPGPQ--PRAFHEPRPIPARARHEDHR 177 GR R+ Q + +L P Q P A E +P PA+ H DHR Sbjct: 843 GRKRKNQQVTQVLQQEPVPEEQETPDA-EEEQPTPAKIPHTDHR 885
>CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Lymphocyte antigen Ly-37) Length = 344 Score = 28.1 bits (61), Expect = 6.6 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = +1 Query: 91 HHLHQPGPQPRAFHEPRPIPARARHEDHRRRPQPA 195 HHL PG H P P R R ++RP P+ Sbjct: 281 HHLQTPG------HRPLPPGHRTREHQQKKRPPPS 309
>MDR19_ARATH (Q9LSJ6) Putative multidrug resistance protein 19 (P-glycoprotein| 17) Length = 1240 Score = 28.1 bits (61), Expect = 6.6 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 10/51 (19%) Frame = -3 Query: 198 HGRLGSATMILVPCPSRDG----------SWFVEGTRLWPRLVEVVENVPE 76 HG G +++ C + G +F E W R++EV++ VP+ Sbjct: 291 HGSKGGTVFVVISCITYGGVSLGQSLSNLKYFSEAFVAWERILEVIKRVPD 341
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 27.7 bits (60), Expect = 8.6 Identities = 11/34 (32%), Positives = 15/34 (44%) Frame = +1 Query: 91 HHLHQPGPQPRAFHEPRPIPARARHEDHRRRPQP 192 HH+H Q + P P + +H H PQP Sbjct: 272 HHMHSHPHQHQTLPPHHPYPHQHQHPAHHPHPQP 305
>RFT1_YARLI (Q6C6S3) Oligosaccharide translocation protein RFT1| Length = 673 Score = 27.7 bits (60), Expect = 8.6 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +1 Query: 55 RHRRQQALRDILHHLHQPGPQPRAFHEPR---PIP 150 +HRRQQ + + +H+ PR HEP+ P+P Sbjct: 58 KHRRQQPSQVFIPPMHENVTAPRDEHEPKMSSPVP 92
>IDUA_MOUSE (P48441) Alpha-L-iduronidase precursor (EC 3.2.1.76)| Length = 634 Score = 27.7 bits (60), Expect = 8.6 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 Query: 136 PRPIPARARHEDHRRRPQPAM 198 PRP PAR R HR+ P P++ Sbjct: 505 PRPFPARGRLTLHRKLPVPSL 525
>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2164 Score = 27.7 bits (60), Expect = 8.6 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +1 Query: 91 HHLHQPGPQPRAFHEPRPIPARARHEDHRRRPQPA 195 HH H P P + + RP RAR + R P+ Sbjct: 2120 HHHHPPAPDRDRYAQERPDTGRARAREQRWSRSPS 2154
>VGLD_PRVRI (P07645) Protein gp50| Length = 402 Score = 27.7 bits (60), Expect = 8.6 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 103 QPGPQPRAFHEPRPIPARARHEDHRRRPQPA 195 +P P+PR P+P PA A R P+PA Sbjct: 268 RPRPRPRPRPRPKPEPAPATPAPPDRLPEPA 298 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,816,882 Number of Sequences: 219361 Number of extensions: 563060 Number of successful extensions: 2917 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2477 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2837 length of database: 80,573,946 effective HSP length: 43 effective length of database: 71,141,423 effective search space used: 1707394152 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
