ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S17P_WHEAT (P46285) Sedoheptulose-1,7-bisphosphatase, chloroplas... 52 3e-07
2S17P_ARATH (P46283) Sedoheptulose-1,7-bisphosphatase, chloroplas... 51 7e-07
3S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplas... 48 6e-06
4S17P_CHLRE (P46284) Sedoheptulose-1,7-bisphosphatase, chloroplas... 34 0.11
5PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b... 28 7.9

>S17P_WHEAT (P46285) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor|
           (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase)
           (SED(1,7)P2ase)
          Length = 393

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -3

Query: 280 RTQVAYGSKNEIIRFEETLYGSSRL 206
           RTQVAYGSKNEIIRFEETLYGSSRL
Sbjct: 359 RTQVAYGSKNEIIRFEETLYGSSRL 383



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>S17P_ARATH (P46283) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor|
           (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase)
           (SED(1,7)P2ase)
          Length = 393

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 280 RTQVAYGSKNEIIRFEETLYGSSRL 206
           RTQVAYGSKNEIIRFEETLYG+SRL
Sbjct: 360 RTQVAYGSKNEIIRFEETLYGTSRL 384



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>S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor|
           (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase)
           (SED(1,7)P2ase)
          Length = 387

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = -3

Query: 280 RTQVAYGSKNEIIRFEETLYGSSRL 206
           RTQVAYGS NEIIRFE+TLYGSSRL
Sbjct: 353 RTQVAYGSLNEIIRFEKTLYGSSRL 377



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>S17P_CHLRE (P46284) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor|
           (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase)
           (SED(1,7)P2ase)
          Length = 389

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -3

Query: 280 RTQVAYGSKNEIIRFEETLYGSS 212
           RTQ+ YGS  E+ RFEE +YG+S
Sbjct: 358 RTQICYGSIGEVRRFEEYMYGTS 380



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>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 37  SARPLYYQFASSQDNNNNNSMLQ 105
           + RPL   +A+ +DNNNNN+  Q
Sbjct: 228 NGRPLRINWAAKRDNNNNNNYQQ 250


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,037,760
Number of Sequences: 219361
Number of extensions: 346070
Number of successful extensions: 646
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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